Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USH2A

Gene Name Gene ID Reads Annotation
USH2A ENSGALG00000009652 2 usherin, transcript variant X3











Genes with expression patterns similar to USH2A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USH2A ENSGALG00000009652 2 2 - - - 1.000 - 1.000 - - - - usherin, transcript variant X3
2. gga-mir-30d ENSGALG00000018290 9 1.952 - - - 1.000 - 0.952 - - - - gga-mir-30d [Source:miRBase;Acc:MI0001198]
3. ZMAT3 ENSGALG00000040948 4 1 - - - - - 1.000 - - - - zinc finger matrin-type 3 [Source:HGNC Symbol;Acc:HGNC:29983]
4. TP53I3 ENSGALG00000016502 178 1 - - - 1.000 - - - - - - tumor protein p53 inducible protein 3 [Source:HGNC Symbol;Acc:HGNC:19373]
5. ATP1B4 ENSGALG00000008593 39 1 - - - - - 1.000 - - - - ATPase Na+/K+ transporting family member beta 4 [Source:NCBI gene;Acc:422365]
6. ENSGALG00000028527 ENSGALG00000028527 1 1 - - - - - 1.000 - - - -
7. GSS ENSGALG00000003281 57 1 - - - 1.000 - - - - - - glutathione synthetase [Source:HGNC Symbol;Acc:HGNC:4624]
8. KCNK10 ENSGALG00000010598 7 1 - - - - - 1.000 - - - - potassium two pore domain channel subfamily K member 10 [Source:HGNC Symbol;Acc:HGNC:6273]
9. TNFSF11 ENSGALG00000026163 26 1 - - - 1.000 - - - - - - TNF superfamily member 11 [Source:NCBI gene;Acc:428067]
10. MGRN1 ENSGALG00000037492 372 1 - - - 1.000 - - - - - - mahogunin ring finger 1 [Source:HGNC Symbol;Acc:HGNC:20254]
11. ACACB 6 1 - - - 1.000 - - - - - - acetyl-CoA carboxylase beta
12. TTC7B ENSGALG00000010680 4 1 - - - 1.000 - - - - - - tetratricopeptide repeat domain 7B [Source:NCBI gene;Acc:423407]
13. ENSGALG00000028196 ENSGALG00000028196 8 1 - - - 1.000 - - - - - -
14. ENSGALG00000006449 ENSGALG00000006449 1 1 - - - 1.000 - - - - - -
15. UAP1L1 ENSGALG00000034948 3 1 - - - 1.000 - - - - - - UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
16. RBM43 ENSGALG00000012479 5 1 - - - 1.000 - - - - - - RNA binding motif protein 43 [Source:HGNC Symbol;Acc:HGNC:24790]
17. PDC ENSGALG00000030417 4 1 - - - - - 1.000 - - - - phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
18. LRCH3 ENSGALG00000007595 21 1 - - - - - 1.000 - - - - leucine rich repeats and calponin homology domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28637]
19. P2RY13 ENSGALG00000039432 16 1 - - - 1.000 - - - - - - purinergic receptor P2Y13 [Source:HGNC Symbol;Acc:HGNC:4537]
20. KREMEN1 ENSGALG00000005808 5 1 - - - - - 1.000 - - - - kringle containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:17550]
21. IL17F ENSGALG00000016677 9 1 - - - 1.000 - - - - - - interleukin 17F
22. ARL15 ENSGALG00000014911 13 1 - - - 1.000 - - - - - - ADP ribosylation factor like GTPase 15 [Source:HGNC Symbol;Acc:HGNC:25945]
23. LOC112532977 ENSGALG00000020986 1 1 - - - 1.000 - - - - - - G-protein coupled receptor 35-like, transcript variant X2
24. GALNTL6 ENSGALG00000030588 3 1 - - - - - 1.000 - - - - polypeptide N-acetylgalactosaminyltransferase-like 6
25. MFNG ENSGALG00000012442 5 1 - - - - - 1.000 - - - - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:7038]
26. CECR2 ENSGALG00000013034 12 1 - - - 1.000 - - - - - - CECR2, histone acetyl-lysine reader [Source:NCBI gene;Acc:418161]
27. CCR8 ENSGALG00000038069 6 1 - - - - - 1.000 - - - - C-C motif chemokine receptor 8 [Source:NCBI gene;Acc:420718]
28. ESYT3 ENSGALG00000012092 13 1 - - - - - 1.000 - - - - extended synaptotagmin 3 [Source:HGNC Symbol;Acc:HGNC:24295]
29. ICK ENSGALG00000016321 19 1 - - - - - 1.000 - - - - intestinal cell kinase [Source:HGNC Symbol;Acc:HGNC:21219]
30. BTBD6 ENSGALG00000033813 163 1 - - - 1.000 - - - - - - BTB domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19897]
31. SYTL2L ENSGALG00000008326 5 1 - - - 1.000 - - - - - - synaptotagmin-like protein 2-like, transcript variant X4
32. GPD1L2 ENSGALG00000012061 31 1 - - - 1.000 - - - - - - glycerol-3-phosphate dehydrogenase 1-like 2
33. OGDHL ENSGALG00000002266 57 0.963 - - - - - 0.963 - - - - oxoglutarate dehydrogenase like [Source:NCBI gene;Acc:423618]
34. ABCA1 ENSGALG00000015433 11 0.958 - - - - - 0.958 - - - - ATP-binding cassette, sub-family A (ABC1), member 1 [Source:NCBI gene;Acc:373945]
35. TOR1AIP2 ENSGALG00000004017 2 0.958 - - - - - 0.958 - - - - torsin 1A interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:24055]
36. LRRTM3 ENSGALG00000002864 29 0.951 - - - - - 0.951 - - - - leucine rich repeat transmembrane neuronal 3 [Source:NCBI gene;Acc:423649]
37. THSD4 ENSGALG00000004087 12 0.951 - - - - - 0.951 - - - - thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
38. ENSGALG00000005650 ENSGALG00000005650 6 0.951 - - - 0.951 - - - - - -
39. RS1 ENSGALG00000016523 11 0.951 - - - - - 0.951 - - - - retinoschisin 1 [Source:NCBI gene;Acc:772315]
40. C10orf67 15 0.937 - - - 0.937 - - - - - - chromosome 10 open reading frame 67, transcript variant X2
41. PLCB2 ENSGALG00000042105 2 0.937 - - - 0.937 - - - - - - phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]
42. FCHSD2 ENSGALG00000017329 3190 0.931 - - - - - 0.931 - - - - FCH and double SH3 domains 2 [Source:HGNC Symbol;Acc:HGNC:29114]
43. ENSGALG00000015888 ENSGALG00000015888 12 0.924 - - - - - 0.924 - - - -
44. XRCC4 ENSGALG00000015620 28 0.92 - - - 0.920 - - - - - - X-ray repair cross complementing 4 [Source:HGNC Symbol;Acc:HGNC:12831]
45. SLC25A29 ENSGALG00000011220 17 0.914 - - - - - 0.914 - - - - solute carrier family 25 member 29 [Source:HGNC Symbol;Acc:HGNC:20116]
46. NDFIP2 ENSGALG00000016909 25 0.913 - - - - - 0.913 - - - - Nedd4 family interacting protein 2 [Source:NCBI gene;Acc:418803]
47. LRRC49 ENSGALG00000004059 29 0.913 - - - - - 0.913 - - - - leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]
48. C17H9ORF7 C17H9ORF7 71 0.911 - - - - - 0.911 - - - -
49. UBE4B ENSGALG00000002649 39 0.904 - - - - - 0.904 - - - - ubiquitination factor E4B [Source:HGNC Symbol;Acc:HGNC:12500]
50. RORALPHA1 RORALPHA1 119 0.903 - - - - - 0.903 - - - -
51. MAPK14 ENSGALG00000042833 13 0.897 - - - - - 0.897 - - - - mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:HGNC:6876]
52. C12orf50 ENSGALG00000045093 9 0.89 - - - 0.890 - - - - - - chromosome 12 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26665]
53. ENSGALG00000005148 ENSGALG00000005148 9 0.89 - - - 0.890 - - - - - -
54. WTIP ENSGALG00000025864 75 0.887 - - - - - 0.887 - - - - WT1 interacting protein [Source:HGNC Symbol;Acc:HGNC:20964]
55. ENSGALG00000028038 ENSGALG00000028038 9 0.878 - - - - - 0.878 - - - -
56. PRSS35 ENSGALG00000015847 52 0.878 - - - - - 0.878 - - - - serine protease 35 [Source:HGNC Symbol;Acc:HGNC:21387]
57. P2RX5 ENSGALG00000004613 31 0.869 - - - - - 0.869 - - - - purinergic receptor P2X 5 [Source:NCBI gene;Acc:395507]
58. ENSGALG00000001919 ENSGALG00000001919 531 0.861 - - - - - 0.861 - - - -
59. SLC32A1 ENSGALG00000038919 61 0.861 - - - - - 0.861 - - - - solute carrier family 32 member 1 [Source:HGNC Symbol;Acc:HGNC:11018]
60. DENND6B ENSGALG00000043771 22 0.86 - - - - - 0.860 - - - - DENN domain containing 6B [Source:HGNC Symbol;Acc:HGNC:32690]
61. PWP2 60 0.859 - - - - - 0.859 - - - - PWP2, small subunit processome component
62. TNNT2 ENSGALG00000000302 568 0.858 - - - - - 0.858 - - - - troponin T2, cardiac type [Source:NCBI gene;Acc:396433]
63. XYLB ENSGALG00000006173 23 0.856 - - - - - 0.856 - - - - xylulokinase [Source:HGNC Symbol;Acc:HGNC:12839]
64. NDEL1 ENSGALG00000001163 16 0.855 - - - - - 0.855 - - - - Gallus gallus nudE neurodevelopment protein 1-like 1 (NDEL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001030696]
65. LRTM2 ENSGALG00000026214 160 0.849 - - - - - 0.849 - - - - leucine rich repeats and transmembrane domains 2 [Source:HGNC Symbol;Acc:HGNC:32443]
66. TXNRD1 ENSGALG00000035345 4784 0.847 - - - - - 0.847 - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
67. SLC35F4 ENSGALG00000012094 30 0.845 - - - - - 0.845 - - - - solute carrier family 35 member F4 [Source:HGNC Symbol;Acc:HGNC:19845]
68. ENSGALG00000026735 ENSGALG00000026735 5 0.834 - - - 0.834 - - - - - -
69. RGR ENSGALG00000002299 17 0.834 - - - 0.834 - - - - - - retinal G protein coupled receptor [Source:NCBI gene;Acc:423619]
70. RAD51D ENSGALG00000031918 1312 0.829 - - - - - 0.829 - - - - RAD51 paralog D [Source:NCBI gene;Acc:417528]
71. gga-mir-1458 ENSGALG00000030959 41 0.827 - - - 0.827 - - - - - - gga-mir-1458 [Source:miRBase;Acc:MI0007063]
72. NFIL3 ENSGALG00000015209 15 0.827 - - - 0.827 - - - - - - nuclear factor, interleukin 3 regulated [Source:NCBI gene;Acc:395326]
73. TRAF3IP2 ENSGALG00000015026 26 0.824 - - - 0.824 - - - - - - TRAF3 interacting protein 2, transcript variant X1
74. MBP ENSGALG00000013640 62 0.817 - - - - - 0.817 - - - - myelin basic protein [Source:NCBI gene;Acc:396217]
75. gga-mir-6561 ENSGALG00000026650 135 0.813 - - - - - 0.813 - - - - gga-mir-6561 [Source:miRBase;Acc:MI0022379]
76. IL6 ENSGALG00000010915 8 0.806 - - - 0.806 - - - - - - interleukin 6 [Source:NCBI gene;Acc:395337]
77. STAB2 32 0.806 - - - 0.806 - - - - - - stabilin 2
78. EEF2K ENSGALG00000006982 12 0.806 - - - 0.806 - - - - - - eukaryotic elongation factor 2 kinase [Source:HGNC Symbol;Acc:HGNC:24615]
79. SEMA5A_1 ENSGALG00000028685 4 0.806 - - - 0.806 - - - - - - semaphorin 5A [Source:HGNC Symbol;Acc:HGNC:10736]
80. HBS1L ENSGALG00000013962 181 0.799 - - - - - 0.799 - - - - HBS1 like translational GTPase [Source:HGNC Symbol;Acc:HGNC:4834]
81. FAM160A1 ENSGALG00000010090 10 0.794 - - - - - 0.794 - - - - family with sequence similarity 160 member A1 [Source:HGNC Symbol;Acc:HGNC:34237]
82. TNNI2 ENSGALG00000006591 690 0.794 - - - - - 0.794 - - - - troponin I2, fast skeletal type [Source:NCBI gene;Acc:396386]
83. AOX2P AOX2P 51 0.792 - - - - - 0.792 - - - -
84. GUCD1 ENSGALG00000006607 32 0.79 - - - - - 0.790 - - - - guanylyl cyclase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14237]
85. DHTKD1 ENSGALG00000003674 300 0.787 - - - - - 0.787 - - - - dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
86. XYLT2 ENSGALG00000007702 3 0.786 - - - - - 0.786 - - - - xylosyltransferase 2 [Source:NCBI gene;Acc:414780]
87. SLC46A1 ENSGALG00000003604 305 0.784 - - - - - 0.784 - - - - solute carrier family 46 member 1 [Source:NCBI gene;Acc:417569]
88. KAL1 KAL1 48 0.783 - - - - - 0.783 - - - -
89. SPSB1 ENSGALG00000002506 2205 0.783 - - - - - 0.783 - - - - splA/ryanodine receptor domain and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:30628]
90. FAM20C ENSGALG00000038768 31 0.78 - - - - - 0.780 - - - - FAM20C, golgi associated secretory pathway kinase [Source:HGNC Symbol;Acc:HGNC:22140]
91. PTPRM ENSGALG00000031284 864 0.776 - - - - - 0.776 - - - - protein tyrosine phosphatase, receptor type M [Source:HGNC Symbol;Acc:HGNC:9675]
92. GFM2 ENSGALG00000014939 26 0.775 - - - - - 0.775 - - - - G elongation factor mitochondrial 2 [Source:HGNC Symbol;Acc:HGNC:29682]
93. PLEKHG4 ENSGALG00000023898 65 0.775 - - - - - 0.775 - - - - pleckstrin homology and RhoGEF domain containing G4 [Source:HGNC Symbol;Acc:HGNC:24501]
94. TSKU ENSGALG00000000761 10 0.768 - - - - - 0.768 - - - - tsukushi, small leucine rich proteoglycan [Source:NCBI gene;Acc:419088]
95. GGA.16412 GGA.16412 846 0.765 - - - - - 0.765 - - - -
96. PROX1 ENSGALG00000009791 1184 0.761 - - - - - 0.761 - - - - prospero homeobox 1 [Source:NCBI gene;Acc:395802]
97. COL17A1 ENSGALG00000029617 167 0.756 - - - - - 0.756 - - - - collagen type XVII alpha 1 chain [Source:NCBI gene;Acc:396503]
98. KIAA0226L KIAA0226L 95 0.753 - - - - - 0.753 - - - -
99. LRCH2 ENSGALG00000005882 145 0.753 - - - - - 0.753 - - - - leucine rich repeats and calponin homology domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29292]
100. ENSGALG00000008449 ENSGALG00000008449 865 0.74 - - - - - 0.740 - - - -

There are 18 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA