Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USH1C

Gene Name Gene ID Reads Annotation
USH1C ENSGALG00000006192 63 USH1 protein network component harmonin [Source:HGNC Symbol;Acc:HGNC:12597]











Genes with expression patterns similar to USH1C

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USH1C ENSGALG00000006192 63 6 - - 1.000 1.000 1.000 1.000 - 1.000 - 1.000 USH1 protein network component harmonin [Source:HGNC Symbol;Acc:HGNC:12597]
2. CLEC18B ENSGALG00000027183 284 1.585 - - - 0.723 - - - 0.862 - - C-type lectin domain family 18 member B, transcript variant X2
3. CHGB ENSGALG00000046616 357 1.558 - - - - 0.768 - - 0.790 - - chromogranin B [Source:HGNC Symbol;Acc:HGNC:1930]
4. ECSCR ENSGALG00000024379 313 0.929 - - - - - - - 0.929 - - endothelial cell surface expressed chemotaxis and apoptosis regulator, transcript variant X2
5. LOC416530 ENSGALG00000005291 207 0.926 - - - - - - - 0.926 - - uncharacterized LOC416530, transcript variant X1
6. ENSGALG00000023735 ENSGALG00000023735 12 0.926 - - - - - - - 0.926 - -
7. ENSGALG00000026756 ENSGALG00000026756 134 0.894 - - - - - - - 0.894 - -
8. PTPRQ ENSGALG00000010935 626 0.894 - - - - - - - 0.894 - - protein tyrosine phosphatase, receptor type Q [Source:HGNC Symbol;Acc:HGNC:9679]
9. LOC416622 ENSGALG00000007030 30 0.891 - - - - 0.891 - - - - - transmembrane protein 180-like, transcript variant X8
10. ZNF507 ENSGALG00000004532 78 0.883 - - - - - - - 0.883 - - zinc finger protein 507, transcript variant X2
11. RAB43 ENSGALG00000005021 5 0.873 - - - - - - - 0.873 - - RAB43, member RAS oncogene family [Source:NCBI gene;Acc:415970]
12. URB2 ENSGALG00000011101 12 0.869 - - - - - - - 0.869 - - URB2 ribosome biogenesis 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28967]
13. PTBP3 ENSGALG00000015669 16 0.868 - - - - - - - 0.868 - - polypyrimidine tract binding protein 3 [Source:HGNC Symbol;Acc:HGNC:10253]
14. NMRAL1 ENSGALG00000029820 29 0.854 - - - - - - - 0.854 - - NmrA like redox sensor 1 [Source:NCBI gene;Acc:416672]
15. SRRL ENSGALG00000002638 26 0.854 - - - - - - - 0.854 - - serine racemase-like, transcript variant X8
16. GABRA2 ENSGALG00000014206 19 0.851 - - - - - - - 0.851 - - gamma-aminobutyric acid type A receptor alpha2 subunit [Source:HGNC Symbol;Acc:HGNC:4076]
17. LZTS2 ENSGALG00000023612 9 0.846 - - 0.846 - - - - - - - leucine zipper tumor suppressor 2 [Source:HGNC Symbol;Acc:HGNC:29381]
18. TOM1L2 ENSGALG00000004902 89 0.845 - - - - - - - 0.845 - - target of myb1 like 2 membrane trafficking protein [Source:NCBI gene;Acc:416509]
19. SWAP70 ENSGALG00000005750 32 0.842 - - - - - - - 0.842 - - switching B cell complex subunit SWAP70 [Source:NCBI gene;Acc:423044]
20. UPF3A ENSGALG00000016815 48 0.832 - - 0.832 - - - - - - - UPF3A, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20332]
21. C1orf228 3 0.83 - - - - - - - 0.830 - - chromosome 1 open reading frame 228, transcript variant X5
22. SFT2D2 ENSGALG00000019228 10 0.83 - - - - - - - 0.830 - - SFT2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25140]
23. GPR17 ENSGALG00000037153 3 0.83 - - - - - - - 0.830 - - G protein-coupled receptor 17 [Source:HGNC Symbol;Acc:HGNC:4471]
24. SUSD1 ENSGALG00000015677 12 0.83 - - - - - - - 0.830 - - sushi domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25413]
25. SOX10 ENSGALG00000012290 3942 0.83 - - - - - - - 0.830 - - SRY-box 10 [Source:NCBI gene;Acc:395573]
26. ENSGALG00000028652 ENSGALG00000028652 65 0.83 - - - - - - - 0.830 - -
27. HBP1 ENSGALG00000008050 19 0.83 - - - - - - - 0.830 - - HMG-box transcription factor 1 [Source:NCBI gene;Acc:417705]
28. SLC30A8 ENSGALG00000034377 3 0.83 - - - - - - - 0.830 - - solute carrier family 30 member 8 [Source:HGNC Symbol;Acc:HGNC:20303]
29. CD101 12 0.83 - - - - - - - 0.830 - - CD101 molecule, transcript variant X4
30. ENSGALG00000023353 ENSGALG00000023353 1 0.83 - - - - - - - 0.830 - -
31. CDHR1 ENSGALG00000002314 24 0.83 - - - - - - - 0.830 - - cadherin related family member 1 [Source:NCBI gene;Acc:414847]
32. GP5 ENSGALG00000045125 3 0.83 - - - - - - - 0.830 - - glycoprotein V platelet [Source:HGNC Symbol;Acc:HGNC:4443]
33. GSAP ENSGALG00000008312 12 0.83 - - - - - - - 0.830 - - gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
34. snoZ39 snoZ39 2 0.83 - - - - - - - 0.830 - -
35. DBN1 ENSGALG00000033405 216 0.83 - - - - - - - 0.830 - - drebrin 1 [Source:NCBI gene;Acc:396496]
36. FAM214B ENSGALG00000002069, ENSGALG00000038279 213 0.83 - - - - - - - 0.830 - - family with sequence similarity 214 member B, transcript variant X14
37. ALKBH3 ENSGALG00000041309 7 0.83 - - - - - - - 0.830 - - alkB homolog 3, alpha-ketoglutaratedependent dioxygenase [Source:NCBI gene;Acc:423169]
38. GTPBP6 ENSGALG00000016717 17 0.83 - - - - - - - 0.830 - - GTP binding protein 6 (putative) [Source:HGNC Symbol;Acc:HGNC:30189]
39. MUC13 7 0.83 - - - - - - - 0.830 - - mucin 13, cell surface associated, transcript variant X10
40. GABRA5 ENSGALG00000016744 12 0.83 - - - - - - - 0.830 - - gamma-aminobutyric acid type A receptor alpha5 subunit [Source:HGNC Symbol;Acc:HGNC:4079]
41. ENSGALG00000023027 ENSGALG00000023027 5 0.83 - - - - - - - 0.830 - -
42. ACACB 6 0.83 - - - - - - - 0.830 - - acetyl-CoA carboxylase beta
43. SPATA4 ENSGALG00000010822 4 0.83 - - - - - - - 0.830 - - spermatogenesis associated 4 [Source:NCBI gene;Acc:422571]
44. TREM-B1 ENSGALG00000003361 8 0.83 - - - - - - - 0.830 - - triggering receptor expressed on myeloid cells B1 [Source:NCBI gene;Acc:768535]
45. PRKRIR PRKRIR 46 0.825 - - - - - - - 0.825 - -
46. INSC ENSGALG00000032558 74 0.825 - - - - - - - 0.825 - - INSC, spindle orientation adaptor protein [Source:HGNC Symbol;Acc:HGNC:33116]
47. ENSGALG00000020972 ENSGALG00000020972 54 0.823 - - - - - - - 0.823 - -
48. WNT4 ENSGALG00000041708 1277 0.82 - - - - - - - 0.820 - - Wnt family member 4 [Source:NCBI gene;Acc:395561]
49. IQUB ENSGALG00000008823 65 0.816 - - - - - - - 0.816 - - IQ motif and ubiquitin domain containing [Source:HGNC Symbol;Acc:HGNC:21995]
50. BBS9 ENSGALG00000031650 13 0.806 - - - - - - - 0.806 - - Bardet-Biedl syndrome 9, transcript variant X5
51. gga-mir-20b gga-mir-20b 7 0.798 - - 0.798 - - - - - - -
52. FEM1B ENSGALG00000028906 4 0.797 - - 0.797 - - - - - - - fem-1 homolog B [Source:NCBI gene;Acc:415559]
53. LHFP 167 0.791 - - - - - - - 0.791 - - lipoma HMGIC fusion partner
54. HECTD2 ENSGALG00000038043 177 0.789 - - - - - - - 0.789 - - HECT domain E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:26736]
55. ZP1 ENSGALG00000031916 122 0.789 - - - - - - - 0.789 - - zona pellucida glycoprotein 1 [Source:NCBI gene;Acc:395418]
56. HNF1B ENSGALG00000005504 1146 0.788 - - - - - - - - - 0.788 HNF1 homeobox B [Source:HGNC Symbol;Acc:HGNC:11630]
57. IKZF1 ENSGALG00000013086 58 0.787 - - - - - - - 0.787 - - IKAROS family zinc finger 1 [Source:NCBI gene;Acc:395974]
58. USP48 ENSGALG00000030857 471 0.786 - - - - - - - 0.786 - - ubiquitin specific peptidase 48 [Source:NCBI gene;Acc:769457]
59. WAPAL WAPAL 625 0.786 - - - - - - - 0.786 - -
60. PDZRN4 ENSGALG00000009530 832 0.785 - - - - - - - 0.785 - - PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]
61. MAP3K13 ENSGALG00000006655 632 0.782 - - - - - - - 0.782 - - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
62. SYCP1 ENSGALG00000002511 13 0.781 - - 0.781 - - - - - - - synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
63. PWWP2B ENSGALG00000010491 30 0.781 - - - - - - - 0.781 - - PWWP domain containing 2B [Source:HGNC Symbol;Acc:HGNC:25150]
64. BAP1 ENSGALG00000004366 12 0.779 - - 0.779 - - - - - - - BRCA1 associated protein 1 [Source:NCBI gene;Acc:415944]
65. ELF2 ENSGALG00000009774 83 0.776 - - - - - - - 0.776 - - E74 like ETS transcription factor 2, transcript variant X5
66. RAD54L2 ENSGALG00000003243 187 0.776 - - - - - - - 0.776 - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
67. CPEB4 ENSGALG00000033512 779 0.775 - - - - - - - 0.775 - - cytoplasmic polyadenylation element binding protein 4 [Source:HGNC Symbol;Acc:HGNC:21747]
68. BFIV21 BFIV21 30 0.775 - - - - - - - 0.775 - -
69. GAN ENSGALG00000013437 11 0.773 - - 0.773 - - - - - - - gigaxonin [Source:HGNC Symbol;Acc:HGNC:4137]
70. GPD1L2 ENSGALG00000012061 31 0.773 - - 0.773 - - - - - - - glycerol-3-phosphate dehydrogenase 1-like 2
71. CNGA2 ENSGALG00000007282 2 0.773 - - 0.773 - - - - - - - cyclic nucleotide gated channel alpha 2 [Source:HGNC Symbol;Acc:HGNC:2149]
72. LRP3 ENSGALG00000004853 13 0.773 - - 0.773 - - - - - - - LDL receptor related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
73. ENSGALG00000026347 ENSGALG00000026347 2 0.773 - - 0.773 - - - - - - -
74. FHL2 ENSGALG00000016797 11 0.773 - - 0.773 - - - - - - - four and a half LIM domains 2 [Source:HGNC Symbol;Acc:HGNC:3703]
75. TLL2 ENSGALG00000005519 10 0.773 - - 0.773 - - - - - - - tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:11844]
76. ZMAT4 ENSGALG00000003470 2 0.773 - - 0.773 - - - - - - - zinc finger matrin-type 4 [Source:HGNC Symbol;Acc:HGNC:25844]
77. SNX8 ENSGALG00000004255 4 0.773 - - 0.773 - - - - - - - sorting nexin 8 [Source:HGNC Symbol;Acc:HGNC:14972]
78. POMGNT2 ENSGALG00000011518 36 0.773 - - 0.773 - - - - - - - protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [Source:NCBI gene;Acc:428446]
79. CLRN2 ENSGALG00000027453 3 0.773 - - 0.773 - - - - - - - clarin 2 [Source:HGNC Symbol;Acc:HGNC:33939]
80. TNFAIP3 ENSGALG00000013861 11 0.773 - - 0.773 - - - - - - - TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]
81. LOXHD1 ENSGALG00000037829 3 0.773 - - 0.773 - - - - - - - lipoxygenase homology domains 1 [Source:HGNC Symbol;Acc:HGNC:26521]
82. ENSGALG00000009041 ENSGALG00000009041 27 0.773 - - 0.773 - - - - - - -
83. FBLN7 ENSGALG00000046358 27 0.772 - - 0.772 - - - - - - - Gallus gallus fibulin 7 (FBLN7), mRNA. [Source:RefSeq mRNA;Acc:NM_001326496]
84. GIT1 ENSGALG00000023703 174 0.768 - - 0.768 - - - - - - - G protein-coupled receptor kinase interacting ArfGAP 1 [Source:NCBI gene;Acc:417584]
85. LRRC49 ENSGALG00000004059 29 0.767 - - 0.767 - - - - - - - leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]
86. C15orf61 ENSGALG00000028141 56 0.766 - - - - - - - 0.766 - - chromosome 15 open reading frame 61 [Source:NCBI gene;Acc:101747767]
87. CALR3 ENSGALG00000003914 8 0.765 - - 0.765 - - - - - - - calreticulin 3 [Source:HGNC Symbol;Acc:HGNC:20407]
88. PLXNB1 23 0.764 - - 0.764 - - - - - - - plexin B1, transcript variant X2
89. PRKAR2B ENSGALG00000008060 40 0.763 - - 0.763 - - - - - - - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
90. RHCG ENSGALG00000006635 7 0.761 - - - - - - - - - 0.761 Rh family C glycoprotein [Source:NCBI gene;Acc:415490]
91. SNX18 ENSGALG00000014914 7 0.761 - - 0.761 - - - - - - - sorting nexin 18 [Source:HGNC Symbol;Acc:HGNC:19245]
92. SULT1C SULT1C 118 0.759 - - - - - - - - - 0.759
93. DOCK5 ENSGALG00000000311 51 0.757 - - 0.757 - - - - - - - dedicator of cytokinesis 5, transcript variant X2
94. SLC17A6 ENSGALG00000039254 16 0.756 - - 0.756 - - - - - - - solute carrier family 17 member 6 [Source:NCBI gene;Acc:422971]
95. SLC20A1 ENSGALG00000013740 40 0.755 - - - - 0.755 - - - - - solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]
96. HOXB13 ENSGALG00000033154 71 0.754 - - 0.754 - - - - - - - homeobox B13 [Source:HGNC Symbol;Acc:HGNC:5112]
97. CDK5RAP3 ENSGALG00000036452 693 0.753 - - - - - - - 0.753 - - CDK5 regulatory subunit associated protein 3 [Source:NCBI gene;Acc:430350]
98. PKDREJ 3 0.747 - - - - 0.747 - - - - - polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)
99. CCDC84 ENSGALG00000007689 18 0.747 - - - - 0.747 - - - - - coiled-coil domain containing 84 [Source:HGNC Symbol;Acc:HGNC:30460]
100. ENSGALG00000027164 ENSGALG00000027164 8 0.747 - - - - 0.747 - - - - -

There are 75 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA