Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USE1

Gene Name Gene ID Reads Annotation
USE1 ENSGALG00000003703 4680 unconventional SNARE in the ER 1 [Source:NCBI gene;Acc:420134]











Genes with expression patterns similar to USE1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USE1 ENSGALG00000003703 4680 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 unconventional SNARE in the ER 1 [Source:NCBI gene;Acc:420134]
2. F F 3639 1.647 - - - - - - - 0.770 - 0.877
3. FTSJ3 ENSGALG00000032993 8929 1.641 - - - - - - - 0.750 - 0.891 FtsJ RNA methyltransferase homolog 3 [Source:NCBI gene;Acc:419943]
4. PERP PERP 734 1.619 - - - - - - - 0.741 - 0.878
5. CHURC1 ENSGALG00000042309 12066 1.593 - - - - - - - 0.735 - 0.858 churchill domain containing 1 [Source:NCBI gene;Acc:395448]
6. TTC3 ENSGALG00000016050 4115 1.559 - - - - - - 0.704 - - 0.855 tetratricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:12393]
7. MRPL15 ENSGALG00000041086 16820 1.54 - - - - - - 0.712 - - 0.828 mitochondrial ribosomal protein L15 [Source:NCBI gene;Acc:421121]
8. PHF14 ENSGALG00000038041 13687 1.532 - - - - - - - 0.728 - 0.804 PHD finger protein 14 [Source:NCBI gene;Acc:420583]
9. YIPF6 ENSGALG00000035973 3333 1.523 - - - - - - - 0.724 - 0.799 Yip1 domain family member 6 [Source:HGNC Symbol;Acc:HGNC:28304]
10. MORN4 ENSGALG00000006149 7772 1.521 - - - - - - - 0.712 - 0.809 MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
11. NDUFA12 ENSGALG00000011325 19807 1.515 - - - - - - 0.712 0.803 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
12. UTP15 ENSGALG00000013510 13122 1.506 - - - - - - - 0.794 - 0.712 UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
13. CENPV ENSGALG00000004503 3032 1.506 - - - - - - - 0.704 - 0.802 centromere protein V
14. DNAJA4 ENSGALG00000036850 6847 1.5 - - - - - - 0.709 0.791 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
15. EHD3 ENSGALG00000009086 14407 1.497 - - - - - - 0.757 - - 0.740 EH domain containing 3 [Source:NCBI gene;Acc:421306]
16. INCENP ENSGALG00000007537 16617 1.494 - - - - - - 0.740 0.754 - - inner centromere protein [Source:NCBI gene;Acc:396270]
17. UBFD1 ENSGALG00000006117 5242 1.484 - - - - - - 0.707 0.777 - - ubiquitin family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30565]
18. MED17 ENSGALG00000017218 5821 1.478 - - - - - - 0.714 - - 0.764 mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
19. ADI1 ENSGALG00000025796 8636 1.463 - - - - - - 0.715 0.748 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
20. TM4SF18 4553 1.454 - - - - - - 0.729 0.725 - - transmembrane 4 L six family member 18, transcript variant X2
21. NLRP1L ENSGALG00000023546 3195 1.452 - - - - - - 0.713 - - 0.739 NLR family, pyrin domain containing 1-like, transcript variant X8
22. GTF2H2 ENSGALG00000002399 2361 1.452 - - - - - - - 0.723 - 0.729 general transcription factor IIH subunit 2, transcript variant X2
23. MTAP ENSGALG00000008174 10976 1.434 - - - - - - - 0.730 0.704 - methylthioadenosine phosphorylase [Source:NCBI gene;Acc:431261]
24. TET1 ENSGALG00000031604 13002 1.424 - - - - - - 0.708 - - 0.716 tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
25. STX6 3297 0.92 - - - - - - - - - 0.920 syntaxin 6
26. GRPEL2 ENSGALG00000002673 105 0.919 - - - - - - - - - 0.919 GrpE like 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:21060]
27. HS6ST1 ENSGALG00000002155 533 0.918 - - - - - - - - - 0.918 heparan sulfate 6-O-sulfotransferase 1 [Source:NCBI gene;Acc:395141]
28. RP9 ENSGALG00000035453 1186 0.917 - - - - - - - - - 0.917 retinitis pigmentosa 9 (autosomal dominant)
29. ENSGALG00000027621 ENSGALG00000027621 863 0.915 - - - - - - - - - 0.915
30. NFKBIE ENSGALG00000044525 633 0.915 - - - - - - - - - 0.915 NFKB inhibitor epsilon [Source:HGNC Symbol;Acc:HGNC:7799]
31. PCMTD2 ENSGALG00000005901 1833 0.913 - - - - - - - - - 0.913 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
32. INTS8 ENSGALG00000037955 3349 0.911 - - - - - - - - - 0.911 integrator complex subunit 8 [Source:NCBI gene;Acc:420230]
33. ZFPM2 ENSGALG00000040079 942 0.911 - - - - - - - - - 0.911 zinc finger protein, FOG family member 2 [Source:HGNC Symbol;Acc:HGNC:16700]
34. TNFRSF21 ENSGALG00000016719 2762 0.91 - - - - - - - - - 0.910 TNF receptor superfamily member 21 [Source:NCBI gene;Acc:422062]
35. TM6SF2 ENSGALG00000029015 109 0.909 - - - - - - - - - 0.909 transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
36. DTX2 ENSGALG00000001905 1475 0.909 - - - - - - - - - 0.909 deltex E3 ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:15973]
37. TYSND1 ENSGALG00000033807 716 0.908 - - - - - - - - - 0.908 trypsin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28531]
38. MAP3K3 ENSGALG00000000525 115 0.908 - - - - - - - - - 0.908 mitogen-activated protein kinase kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6855]
39. IFNAR2 ENSGALG00000041867 1596 0.908 - - - - - - - - - 0.908 interferon alpha and beta receptor subunit 2 [Source:NCBI gene;Acc:395664]
40. RGP1 ENSGALG00000002394 5937 0.908 - - - - - - - - - 0.908 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
41. ENSGALG00000004643 ENSGALG00000004643 2297 0.907 - - - - - - - - - 0.907
42. GPR114 GPR114 46 0.907 - - - - - - - - - 0.907
43. PROCR ENSGALG00000006547 645 0.905 - - - - - - - - - 0.905 protein C receptor [Source:NCBI gene;Acc:424867]
44. ENSGALG00000004772 ENSGALG00000004772 173 0.905 - - - - - - - - - 0.905
45. ATP2B2 ENSGALG00000030908 584 0.905 - - - - - - - - - 0.905 ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
46. CNKSR3 ENSGALG00000027159 41 0.905 - - - - - - - - - 0.905 CNKSR family member 3, transcript variant X2
47. UBE3C ENSGALG00000006461 57 0.905 - - - - - - - - - 0.905 ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
48. CENPJ ENSGALG00000017148 1415 0.905 - - - - - - - - - 0.905 centromere protein J [Source:HGNC Symbol;Acc:HGNC:17272]
49. TTI1 ENSGALG00000006791 1218 0.904 - - - - - - - - - 0.904 TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
50. PTPRE ENSGALG00000009823 250 0.904 - - - - - - - - - 0.904 protein tyrosine phosphatase, receptor type E [Source:HGNC Symbol;Acc:HGNC:9669]
51. BZFP1 ENSGALG00000027546 632 0.904 - - - - - - - - - 0.904 B-locus zinc finger protein 1 [Source:NCBI gene;Acc:396247]
52. SNN ENSGALG00000028876 1687 0.903 - - - - - - - - - 0.903 stannin [Source:NCBI gene;Acc:416429]
53. PKDCCB ENSGALG00000011166 74 0.903 - - - - - - - - - 0.903 protein kinase domain containing, cytoplasmic b
54. ENSGALG00000008594 ENSGALG00000008594 54 0.903 - - - - - - - - - 0.903
55. SHPK ENSGALG00000004637 2386 0.903 - - - - - - - - - 0.903 sedoheptulokinase, transcript variant X1
56. SOS2 ENSGALG00000012273 41 0.902 - - - - - - - - - 0.902 SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]
57. PRKAB2 ENSGALG00000001678 1999 0.902 - - - - - - - - - 0.902 protein kinase AMP-activated non-catalytic subunit beta 2 [Source:NCBI gene;Acc:427017]
58. AGMO ENSGALG00000010792 76 0.902 - - - - - - - - - 0.902 alkylglycerol monooxygenase [Source:HGNC Symbol;Acc:HGNC:33784]
59. ADAMTS12 55 0.902 - - - - - - - - - 0.902 ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
60. ENSGALG00000018358 ENSGALG00000018358 101 0.901 - - - - - - - - - 0.901
61. EEA1 ENSGALG00000011280 923 0.9 - - - - - - - - - 0.900 early endosome antigen 1 [Source:HGNC Symbol;Acc:HGNC:3185]
62. MAP3K8 ENSGALG00000007356 188 0.899 - - - - - - - - - 0.899 mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
63. PMVK ENSGALG00000046656 645 0.898 - - - - - - - - - 0.898 phosphomevalonate kinase [Source:HGNC Symbol;Acc:HGNC:9141]
64. TRIP4 ENSGALG00000030672 1255 0.898 - - - - - - - - - 0.898 thyroid hormone receptor interactor 4 [Source:HGNC Symbol;Acc:HGNC:12310]
65. TMEM199 ENSGALG00000023757 10781 0.898 - - - - - - - - - 0.898 transmembrane protein 199 [Source:HGNC Symbol;Acc:HGNC:18085]
66. TFG ENSGALG00000015299 849 0.896 - - - - - - - - - 0.896 TRK-fused gene [Source:HGNC Symbol;Acc:HGNC:11758]
67. PDCD7 ENSGALG00000021027 3807 0.896 - - - - - - - - - 0.896 programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
68. BCOR ENSGALG00000016245 85 0.895 - - - - - - - - - 0.895 BCL6 corepressor, transcript variant X8
69. STAT5 STAT5 1796 0.895 - - - - - - - - - 0.895
70. IMPA2 ENSGALG00000013814 4202 0.894 - - - - - - - - - 0.894 inositol monophosphatase 2 [Source:HGNC Symbol;Acc:HGNC:6051]
71. ZNF142 ENSGALG00000011393 2078 0.894 - - - - - - - - - 0.894 zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
72. SERPINB6 ENSGALG00000012866 1582 0.894 - - - - - - - - - 0.894 serpin family B member 6 [Source:NCBI gene;Acc:420895]
73. MCFD2 ENSGALG00000010017 8905 0.894 - - - - - - - - - 0.894 multiple coagulation factor deficiency 2 [Source:NCBI gene;Acc:421413]
74. CTCF 10811 0.893 - - - - - - - - - 0.893 CCCTC-binding factor, transcript variant X2
75. VAV2 ENSGALG00000002699 503 0.892 - - - - - - - - - 0.892 vav guanine nucleotide exchange factor 2 [Source:NCBI gene;Acc:373938]
76. FAM83D ENSGALG00000039047, ENSGALG00000044404 297 0.891 - - - - - - - - - 0.891 family with sequence similarity 83, member D
77. MID1 ENSGALG00000038504 1684 0.891 - - - - - - - - - 0.891 midline 1 [Source:NCBI gene;Acc:373920]
78. SLC38A1 ENSGALG00000009698 566 0.891 - - - - - - - - - 0.891 solute carrier family 38 member 1 [Source:NCBI gene;Acc:417806]
79. OBFC1 OBFC1 1071 0.889 - - - - - - - - - 0.889
80. FAM96B 14435 0.888 - - - - - - - - - 0.888 family with sequence similarity 96 member B
81. TRMT44 ENSGALG00000015594 1490 0.888 - - - - - - - - - 0.888 tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
82. CTK-1 CTK-1 1618 0.888 - - - - - - - - - 0.888
83. HEATR5A 1233 0.887 - - - - - - - - - 0.887 HEAT repeat containing 5A, transcript variant X7
84. PLXNA4 ENSGALG00000006473 125 0.887 - - - - - - - - - 0.887 plexin A4 [Source:HGNC Symbol;Acc:HGNC:9102]
85. DUSP23 1663 0.886 - - - - - - - - - 0.886 dual specificity phosphatase 23, transcript variant X1
86. TPGS2 ENSGALG00000026547 1967 0.886 - - - - - - - - - 0.886 tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
87. MITF ENSGALG00000039583 865 0.885 - - - - - - - - - 0.885 melanogenesis associated transcription factor [Source:NCBI gene;Acc:395886]
88. NBN ENSGALG00000037686 648 0.884 - - - - - - - - - 0.884 nibrin [Source:NCBI gene;Acc:374246]
89. VOPP1 ENSGALG00000042773 771 0.884 - - - - - - - - - 0.884 VOPP1, WBP1/VOPP1 family member [Source:HGNC Symbol;Acc:HGNC:34518]
90. PSMG3 ENSGALG00000004203 11240 0.883 - - - - - - - - - 0.883 proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
91. HPS4 ENSGALG00000005595 2217 0.883 - - - - - - - - - 0.883 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 [Source:HGNC Symbol;Acc:HGNC:15844]
92. CEP57 ENSGALG00000017201 524 0.882 - - - - - - - - - 0.882 centrosomal protein 57 [Source:HGNC Symbol;Acc:HGNC:30794]
93. EP3 EP3 741 0.882 - - - - - - - - - 0.882
94. COL12A1 ENSGALG00000015908 1300 0.882 - - - - - - - - - 0.882 collagen type XII alpha 1 chain [Source:NCBI gene;Acc:395875]
95. MASP1 ENSGALG00000007419 141 0.882 - - - - - - - - - 0.882 mannan binding lectin serine peptidase 1 [Source:NCBI gene;Acc:407088]
96. RFWD3 2315 0.881 - - - - - - - - - 0.881 ring finger and WD repeat domain 3
97. WDR33 ENSGALG00000002043 6340 0.881 - - - - - - - - - 0.881 WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
98. RPRD2 ENSGALG00000014656 939 0.88 - - - - - - - - - 0.880 regulation of nuclear pre-mRNA domain containing 2 [Source:NCBI gene;Acc:425074]
99. RASSF8 ENSGALG00000014041 850 0.88 - - - - - - - - - 0.880 Ras association domain family member 8 [Source:HGNC Symbol;Acc:HGNC:13232]
100. FN3K ENSGALG00000001531 208 0.879 - - - - - - - - - 0.879 fructosamine 3 kinase [Source:HGNC Symbol;Acc:HGNC:24822]

There are 610 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA