Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USB1

Gene Name Gene ID Reads Annotation
USB1 ENSGALG00000035604 4003 U6 snRNA biogenesis phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:25792]











Genes with expression patterns similar to USB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USB1 ENSGALG00000035604 4003 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 U6 snRNA biogenesis phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:25792]
2. GTF3A ENSGALG00000017098 9264 2.281 - - - 0.786 - - 0.771 0.724 - - general transcription factor IIIA [Source:NCBI gene;Acc:418931]
3. CHCHD3 ENSGALG00000006489 18592 1.72 - - - 0.841 - - 0.879 - - - coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21906]
4. CANX ENSGALG00000032148 11297 1.708 - - - 0.847 - - 0.861 - - - calnexin [Source:NCBI gene;Acc:416288]
5. DBNDD2 ENSGALG00000003921 8301 1.67 - - - 0.838 - - 0.832 - - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
6. C4H4ORF29 C4H4ORF29 2442 1.616 - - - 0.797 - 0.819 - - - -
7. CACYBP ENSGALG00000004554 7320 1.609 - - - 0.824 - - 0.785 - - - calcyclin binding protein [Source:HGNC Symbol;Acc:HGNC:30423]
8. SNORA31 SNORA31 183 1.582 - - - 0.882 - - 0.700 - - -
9. CMSS1 ENSGALG00000015267 2954 1.529 - - - 0.740 - - 0.789 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
10. TMEM251 ENSGALG00000017387 3423 1.502 - - - 0.733 - - 0.769 - - - transmembrane protein 251 [Source:NCBI gene;Acc:423422]
11. CYB5R3 ENSGALG00000014122 7664 1.49 - - - 0.732 - - 0.758 - - - cytochrome b5 reductase 3 [Source:NCBI gene;Acc:418220]
12. HIPK3 ENSGALG00000011695 6842 1.483 - - - - - 0.773 0.710 - - - homeodomain interacting protein kinase 3 [Source:NCBI gene;Acc:421597]
13. NUP205 ENSGALG00000011662 4157 1.482 - - - 0.748 - - 0.734 - - - nucleoporin 205
14. FN3KRP ENSGALG00000028979 4160 1.479 - - - 0.731 - - 0.748 - - - fructosamine 3 kinase related protein [Source:NCBI gene;Acc:417336]
15. ZCCHC2 ENSGALG00000012889 3163 1.475 - - - 0.758 - - 0.717 - - - zinc finger CCHC-type containing 2 [Source:HGNC Symbol;Acc:HGNC:22916]
16. ATP6V1D ENSGALG00000009570 9827 0.951 - - - - - - - 0.951 - - ATPase H+ transporting V1 subunit D [Source:NCBI gene;Acc:423280]
17. PRELP ENSGALG00000034456 4354 0.95 - - - - - - - 0.950 - - proline and arginine rich end leucine rich repeat protein [Source:HGNC Symbol;Acc:HGNC:9357]
18. PLCZ1 ENSGALG00000013123 3 0.934 - - - - - 0.934 - - - - phospholipase C zeta 1 [Source:NCBI gene;Acc:418182]
19. SMOX ENSGALG00000015977 18 0.934 - - - - - 0.934 - - - - spermine oxidase [Source:HGNC Symbol;Acc:HGNC:15862]
20. ADAMTS12 55 0.934 - - - - - 0.934 - - - - ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
21. FTO ENSGALG00000041036 11 0.934 - - - - - 0.934 - - - - FTO, alpha-ketoglutarate dependent dioxygenase [Source:NCBI gene;Acc:415718]
22. NSUN7 ENSGALG00000014264 4 0.934 - - - - - 0.934 - - - - NOP2/Sun RNA methyltransferase family member 7 [Source:HGNC Symbol;Acc:HGNC:25857]
23. ENSGALG00000007846 ENSGALG00000007846 2 0.934 - - - - - 0.934 - - - -
24. SLC35F5 ENSGALG00000012166 25 0.934 - - - - - 0.934 - - - - solute carrier family 35 member F5 [Source:HGNC Symbol;Acc:HGNC:23617]
25. ENSGALG00000004619 ENSGALG00000004619 3 0.934 - - - - - 0.934 - - - -
26. C21orf62 ENSGALG00000040059 5 0.934 - - - - - 0.934 - - - - chromosome 21 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:1305]
27. ENSGALG00000006504 ENSGALG00000006504 3 0.934 - - - - - 0.934 - - - -
28. STEAP1 ENSGALG00000009006 16 0.934 - - - - - 0.934 - - - - STEAP family member 1
29. CYR61 ENSGALG00000008661 43 0.932 - - - - - 0.932 - - - - cysteine rich angiogenic inducer 61 [Source:NCBI gene;Acc:429089]
30. TMEM82 16 0.929 - - - - - 0.929 - - - - transmembrane protein 82, transcript variant X2
31. KCNJ15 ENSGALG00000016055 66 0.928 - - - - - 0.928 - - - - potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
32. ENSGALG00000007509 ENSGALG00000007509 18441 0.924 - - - - - - - 0.924 - -
33. SEC23A ENSGALG00000010150 11679 0.923 - - - - - - - 0.923 - - Sec23 homolog A, coat complex II component [Source:HGNC Symbol;Acc:HGNC:10701]
34. PRKCB ENSGALG00000037943 29 0.92 - - - - - 0.920 - - - - protein kinase C beta [Source:HGNC Symbol;Acc:HGNC:9395]
35. DNAH5L ENSGALG00000013268 61 0.918 - - - - - 0.918 - - - - dynein axonemal heavy chain 5-like
36. STK38 ENSGALG00000000523 44 0.917 - - - - - 0.917 - - - - serine/threonine kinase 38 [Source:HGNC Symbol;Acc:HGNC:17847]
37. URM1 ENSGALG00000004971 17880 0.914 - - - - - - 0.914 - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
38. PTK2B ENSGALG00000016564 406 0.913 - - - - - 0.913 - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
39. SNORA50 SNORA50 9 0.911 - - - - - 0.911 - - - -
40. SLCO2B1 ENSGALG00000017302 239 0.909 - - - - - 0.909 - - - - solute carrier organic anion transporter family member 2B1 [Source:HGNC Symbol;Acc:HGNC:10962]
41. TBK1 ENSGALG00000009840 1650 0.906 - - - 0.906 - - - - - - TANK binding kinase 1 [Source:NCBI gene;Acc:417825]
42. VPS29 ENSGALG00000004529 22509 0.906 - - - - - - 0.906 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
43. KIF6 ENSGALG00000010057 84 0.905 - - - 0.905 - - - - - - kinesin family member 6 [Source:HGNC Symbol;Acc:HGNC:21202]
44. ENSGALG00000027412 ENSGALG00000027412 202 0.904 - - - 0.904 - - - - - -
45. MLH3 ENSGALG00000010304 231 0.903 - - - 0.903 - - - - - - mutL homolog 3 [Source:HGNC Symbol;Acc:HGNC:7128]
46. ENSGALG00000020283 ENSGALG00000020283 10 0.903 - - - - - 0.903 - - - -
47. CLOCK ENSGALG00000013793 9 0.903 - - - - - 0.903 - - - - clock circadian regulator [Source:NCBI gene;Acc:373991]
48. ZBTB17 ENSGALG00000035352 280 0.902 - - - 0.902 - - - - - - zinc finger and BTB domain containing 17 [Source:NCBI gene;Acc:396541]
49. DBN1 ENSGALG00000033405 216 0.902 - - - 0.902 - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
50. FBXL4 ENSGALG00000015490 12 0.902 - - - - - 0.902 - - - - F-box and leucine rich repeat protein 4 [Source:HGNC Symbol;Acc:HGNC:13601]
51. ENSGALG00000000193 ENSGALG00000000193 19 0.901 - - - - - 0.901 - - - -
52. MRPS30 ENSGALG00000014874 3416 0.9 - - - 0.900 - - - - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
53. GUF1 ENSGALG00000014217 211 0.899 - - - 0.899 - - - - - - GUF1 homolog, GTPase [Source:HGNC Symbol;Acc:HGNC:25799]
54. TRIM62 ENSGALG00000028437 5124 0.899 - - - 0.899 - - - - - - tripartite motif containing 62 [Source:HGNC Symbol;Acc:HGNC:25574]
55. KRIT1 ENSGALG00000042651 4486 0.897 - - - - - - 0.897 - - - KRIT1, ankyrin repeat containing [Source:NCBI gene;Acc:420549]
56. KIAA1432 KIAA1432 1792 0.896 - - - 0.896 - - - - - -
57. GFPT2 ENSGALG00000039705 562 0.896 - - - 0.896 - - - - - - glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]
58. VWDE ENSGALG00000042443 160 0.893 - - - 0.893 - - - - - - von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
59. ENSGALG00000020779 ENSGALG00000020779 19 0.893 - - - - - 0.893 - - - -
60. DOPEY1 279 0.893 - - - - - 0.893 - - - - dopey family member 1, transcript variant X8
61. FRRS1 ENSGALG00000005418 332 0.891 - - - 0.891 - - - - - - ferric chelate reductase 1 [Source:HGNC Symbol;Acc:HGNC:27622]
62. WDR96 WDR96 255 0.889 - - - 0.889 - - - - - -
63. NCOA3 ENSGALG00000004570 243 0.887 - - - 0.887 - - - - - - nuclear receptor coactivator 3 [Source:HGNC Symbol;Acc:HGNC:7670]
64. ITGA9 ENSGALG00000029378 415 0.885 - - - 0.885 - - - - - - integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
65. CLCN7 ENSGALG00000030826 3173 0.885 - - - - - - 0.885 - - - chloride voltage-gated channel 7 [Source:NCBI gene;Acc:416656]
66. FER1L6 ENSGALG00000033783 196 0.884 - - - - - 0.884 - - - - fer-1 like family member 6 [Source:HGNC Symbol;Acc:HGNC:28065]
67. ADCY9 ENSGALG00000007779 766 0.884 - - - 0.884 - - - - - - adenylate cyclase 9 [Source:NCBI gene;Acc:395339]
68. AKT1 ENSGALG00000011620 4089 0.884 - - - 0.884 - - - - - - AKT serine/threonine kinase 1 [Source:NCBI gene;Acc:395928]
69. ASRGL1 ENSGALG00000015949 403 0.884 - - - 0.884 - - - - - - asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
70. MORC3 ENSGALG00000036556 2976 0.884 - - - - - - 0.884 - - - MORC family CW-type zinc finger 3 [Source:NCBI gene;Acc:418513]
71. BAG5 ENSGALG00000031062 4498 0.884 - - - 0.884 - - - - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
72. PRKD1 ENSGALG00000009900 2094 0.883 - - - 0.883 - - - - - - protein kinase D1 [Source:NCBI gene;Acc:423302]
73. BSPRY ENSGALG00000008861 98 0.882 - - - - - 0.882 - - - - B-box and SPRY domain containing [Source:HGNC Symbol;Acc:HGNC:18232]
74. CA3 CA3 200 0.881 - - - 0.881 - - - - - -
75. RBP4 ENSGALG00000015374 122 0.881 - - - - - 0.881 - - - - retinol binding protein 4 [Source:NCBI gene;Acc:396454]
76. ABHD17A ENSGALG00000041163 5578 0.881 - - - - - - 0.881 - - - abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:HGNC:28756]
77. RNPC3 ENSGALG00000005162 269 0.881 - - - 0.881 - - - - - - RNA binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:HGNC:18666]
78. FA2H ENSGALG00000002775 396 0.881 - - - - - 0.881 - - - - fatty acid 2-hydroxylase [Source:HGNC Symbol;Acc:HGNC:21197]
79. KDM2B ENSGALG00000004225 11513 0.88 - - - 0.880 - - - - - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
80. SLC25A32 ENSGALG00000039882 3100 0.88 - - - 0.880 - - - - - - solute carrier family 25 member 32 [Source:NCBI gene;Acc:428377]
81. ITPKB ENSGALG00000009068 324 0.878 - - - 0.878 - - - - - - inositol-trisphosphate 3-kinase B [Source:HGNC Symbol;Acc:HGNC:6179]
82. EX-FABP EX-FABP 516 0.877 - - - - - 0.877 - - - -
83. IFT43 ENSGALG00000020415 1218 0.876 - - - 0.876 - - - - - - intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669]
84. FIGNL1 ENSGALG00000026363 2194 0.876 - - - 0.876 - - - - - - fidgetin like 1, transcript variant X2
85. ELMOD1 ENSGALG00000017169 2303 0.875 - - - 0.875 - - - - - - ELMO domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25334]
86. RBFOX1 ENSGALG00000034325 2133 0.875 - - - 0.875 - - - - - - RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]
87. IRF6 ENSGALG00000001405 3144 0.875 - - - 0.875 - - - - - - interferon regulatory factor 6 [Source:HGNC Symbol;Acc:HGNC:6121]
88. MOSPD1 ENSGALG00000006132 8503 0.874 - - - 0.874 - - - - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
89. RNASEH1 ENSGALG00000016389 2694 0.874 - - - - - - 0.874 - - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
90. DEPDC5 ENSGALG00000006766 1592 0.873 - - - 0.873 - - - - - - DEP domain containing 5, transcript variant X6
91. GP1BB ENSGALG00000021529 348 0.872 - - - - - 0.872 - - - - glycoprotein Ib platelet subunit beta [Source:HGNC Symbol;Acc:HGNC:4440]
92. RBM19 ENSGALG00000008289 10702 0.871 - - - - - - 0.871 - - - RNA binding motif protein 19 [Source:NCBI gene;Acc:417029]
93. FLCN ENSGALG00000004816 4101 0.87 - - - - - - 0.870 - - - folliculin, transcript variant X1
94. SDOS SDOS 66125 0.87 - - - - - - - 0.870 - -
95. TGS1 ENSGALG00000015340 5897 0.87 - - - 0.870 - - - - - - trimethylguanosine synthase 1 [Source:NCBI gene;Acc:421126]
96. VPS13B 2293 0.869 - - - 0.869 - - - - - - vacuolar protein sorting 13 homolog B
97. SCPEP1 ENSGALG00000003185 2322 0.868 - - - 0.868 - - - - - - serine carboxypeptidase 1 [Source:NCBI gene;Acc:417403]
98. KIN ENSGALG00000030702 1608 0.867 - - - 0.867 - - - - - - Kin17 DNA and RNA binding protein [Source:HGNC Symbol;Acc:HGNC:6327]
99. SQLE ENSGALG00000036915 4172 0.867 - - - - - - 0.867 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
100. NDST3 22 0.865 - - - - - 0.865 - - - - N-deacetylase and N-sulfotransferase 3, transcript variant X11

There are 607 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA