Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UPF3B

Gene Name Gene ID Reads Annotation
UPF3B ENSGALG00000008618 12350 UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]











Genes with expression patterns similar to UPF3B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UPF3B ENSGALG00000008618 12350 9 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
2. PRCC ENSGALG00000040696 9346 2.547 - - - - 0.961 - 0.739 0.847 - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
3. LGMN ENSGALG00000010811 7401 1.957 - - - - 0.974 - - 0.983 - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
4. DGKZ ENSGALG00000008380 5389 1.901 - - - - 0.972 - - 0.929 - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
5. GSTO1 ENSGALG00000008409 7561 1.885 - - - - 0.901 - - 0.984 - - glutathione S-transferase omega 1 [Source:NCBI gene;Acc:423881]
6. SRGAP1 ENSGALG00000009825 6753 1.827 - - - - 0.965 - 0.862 - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
7. HSF2 ENSGALG00000038420 5259 1.784 - - - - 0.982 - 0.802 - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
8. PSMD3 ENSGALG00000033162 25615 1.734 - - - - 0.967 - 0.767 - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
9. ZYX ENSGALG00000014688 8686 1.731 - - - - 0.953 - 0.778 - - - zyxin [Source:NCBI gene;Acc:418300]
10. CHMP5 ENSGALG00000013160 13347 1.727 - - - - 0.949 - 0.778 - - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
11. SLC30A4 ENSGALG00000005703 5696 1.726 - - - - 0.954 - 0.772 - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
12. SHROOM2 ENSGALG00000030802 4517 1.715 - - - - - - 0.734 0.981 - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
13. PBRM1 ENSGALG00000037455 6450 1.71 - - - - 0.976 - 0.734 - - - polybromo 1 [Source:NCBI gene;Acc:396074]
14. SGCE ENSGALG00000009670 3070 1.699 - - - - - - - 0.981 0.718 - sarcoglycan epsilon [Source:HGNC Symbol;Acc:HGNC:10808]
15. AES ENSGALG00000029503 17676 1.696 - - - - - - 0.762 0.934 - - amino-terminal enhancer of split [Source:HGNC Symbol;Acc:HGNC:307]
16. IDI1 ENSGALG00000006723 7761 1.693 - - - - - - 0.757 0.936 - - isopentenyl-diphosphate delta isomerase 1, transcript variant X1
17. COQ5 ENSGALG00000007185 5614 1.692 - - - - 0.975 - 0.717 - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
18. SNX14 ENSGALG00000015831 2554 1.683 - - - - 0.976 - 0.707 - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
19. SLMO2 SLMO2 9207 1.68 - - - - 0.962 - 0.718 - - -
20. UBE2F ENSGALG00000003812 13874 1.641 - - - - - - 0.717 0.924 - - ubiquitin conjugating enzyme E2 F (putative) [Source:NCBI gene;Acc:424015]
21. MAD2L1 ENSGALG00000011967 16125 1.634 - - - - 0.853 - 0.781 - - - mitotic arrest deficient 2 like 1 [Source:NCBI gene;Acc:422675]
22. MRPL14 ENSGALG00000010285 11820 1.624 - - - - - - 0.801 0.823 - - mitochondrial ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:14279]
23. SVIL ENSGALG00000007331 12032 1.615 - - - - 0.820 - - 0.795 - - supervillin [Source:HGNC Symbol;Acc:HGNC:11480]
24. GMNN ENSGALG00000013626 15838 1.607 - - - - - - 0.777 0.830 - - geminin, DNA replication inhibitor [Source:NCBI gene;Acc:421004]
25. RCHY1 ENSGALG00000023335 12947 1.507 - - - - - - 0.715 0.792 - - ring finger and CHY zinc finger domain containing 1 [Source:NCBI gene;Acc:771726]
26. GLRX5 ENSGALG00000011079 28943 1.504 - - - - - - 0.756 0.748 - - glutaredoxin 5 [Source:NCBI gene;Acc:423440]
27. CSNK2A1 ENSGALG00000006197 41409 1.482 - - - - 0.741 - 0.741 - - - casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
28. ATPAF1 ENSGALG00000010444 3677 0.995 - - - - - - - 0.995 - - ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
29. TRMT10A ENSGALG00000012264 2467 0.995 - - - - - - - 0.995 - - tRNA methyltransferase 10A [Source:HGNC Symbol;Acc:HGNC:28403]
30. NMD3 ENSGALG00000009533 8726 0.992 - - - - - - - 0.992 - - NMD3 ribosome export adaptor [Source:HGNC Symbol;Acc:HGNC:24250]
31. WDR91 ENSGALG00000011724 5787 0.986 - - - - - - - 0.986 - - WD repeat domain 91 [Source:NCBI gene;Acc:417939]
32. CCDC167 ENSGALG00000010151 3567 0.986 - - - - - - - 0.986 - - coiled-coil domain containing 167 [Source:NCBI gene;Acc:421433]
33. MRPS31 ENSGALG00000017033 9287 0.986 - - - - - - - 0.986 - - mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
34. TNFRSF11B ENSGALG00000043167 911 0.985 - - - - - - - 0.985 - - TNF receptor superfamily member 11b [Source:NCBI gene;Acc:378803]
35. C26H6ORF106 C26H6ORF106 2168 0.985 - - - - - - - 0.985 - -
36. PRKAR2A ENSGALG00000007023 909 0.985 - - - - - - - 0.985 - - protein kinase cAMP-dependent type II regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9391]
37. EPM2A ENSGALG00000012275 872 0.985 - - - - - - - 0.985 - - EPM2A, laforin glucan phosphatase [Source:NCBI gene;Acc:421611]
38. GOT2 ENSGALG00000002321 4961 0.985 - - - - - - - 0.985 - - glutamic-oxaloacetic transaminase 2 [Source:NCBI gene;Acc:396533]
39. MRPS7 ENSGALG00000007999 5445 0.985 - - - - - - - 0.985 - - mitochondrial ribosomal protein S7 [Source:NCBI gene;Acc:422122]
40. POLR3H ENSGALG00000011947 2899 0.985 - - - - - - - 0.985 - - RNA polymerase III subunit H [Source:NCBI gene;Acc:417990]
41. TCTEX1D2 ENSGALG00000027722 2201 0.985 - - - - - - - 0.985 - - Tctex1 domain containing 2
42. NOVA1 ENSGALG00000009850 7584 0.985 - - - - - - - 0.985 - - uncharacterized LOC423300 [Source:NCBI gene;Acc:423300]
43. TNPO3 ENSGALG00000039420 5178 0.985 - - - - - - - 0.985 - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
44. PM20D1 ENSGALG00000000724 2108 0.985 - - - - - - - 0.985 - - peptidase M20 domain containing 1 [Source:NCBI gene;Acc:419838]
45. CLIP1 ENSGALG00000004467 1058 0.985 - - - - - - - 0.985 - - CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]
46. KPNA1 ENSGALG00000014426 2724 0.985 - - - - - - - 0.985 - - karyopherin subunit alpha 1 [Source:NCBI gene;Acc:418271]
47. LYRM4 ENSGALG00000027339 2917 0.985 - - - - - - - 0.985 - - LYR motif containing 4 [Source:NCBI gene;Acc:420874]
48. GNG10 ENSGALG00000015683 6905 0.985 - - - - - - - 0.985 - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
49. KCNK5 ENSGALG00000034077 3233 0.985 - - - - - - - 0.985 - - potassium two pore domain channel subfamily K member 5 [Source:HGNC Symbol;Acc:HGNC:6280]
50. CEP192 ENSGALG00000035625 2270 0.984 - - - - - - - 0.984 - - centrosomal protein 192 [Source:HGNC Symbol;Acc:HGNC:25515]
51. RAB24 ENSGALG00000002984 6264 0.984 - - - - - - - 0.984 - - RAB24, member RAS oncogene family [Source:NCBI gene;Acc:427627]
52. B9D1 ENSGALG00000005096 760 0.984 - - - - - - - 0.984 - - B9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24123]
53. COL14A1 ENSGALG00000037675 2652 0.984 - - - - - - - 0.984 - - collagen type XIV alpha 1 chain [Source:NCBI gene;Acc:396276]
54. EEFSEC ENSGALG00000038684 298 0.984 - - - - - - - 0.984 - - eukaryotic elongation factor, selenocysteine-tRNA specific [Source:HGNC Symbol;Acc:HGNC:24614]
55. ELMO2 ENSGALG00000007246 4569 0.983 - - - - - - - 0.983 - - engulfment and cell motility 2 [Source:HGNC Symbol;Acc:HGNC:17233]
56. ANGIOPOIETIN-2 ANGIOPOIETIN-2 920 0.983 - - - - - - - 0.983 - -
57. TLE3 ENSGALG00000008120 2655 0.983 - - - - - - - 0.983 - - transducin like enhancer of split 3, transcript variant X10
58. CAPZA1 ENSGALG00000001547 24242 0.983 - - - - - - - 0.983 - - capping actin protein of muscle Z-line alpha subunit 1 [Source:NCBI gene;Acc:396521]
59. OTUD4 ENSGALG00000009968 3919 0.983 - - - - - - - 0.983 - - OTU deubiquitinase 4 [Source:HGNC Symbol;Acc:HGNC:24949]
60. ARFGAP3 ENSGALG00000014140 4612 0.983 - - - - - - - 0.983 - - ADP ribosylation factor GTPase activating protein 3 [Source:NCBI gene;Acc:418224]
61. MFF ENSGALG00000003079 5289 0.982 - - - - - - - 0.982 - - mitochondrial fission factor [Source:HGNC Symbol;Acc:HGNC:24858]
62. HHIP ENSGALG00000009948 1536 0.982 - - - - - - - 0.982 - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
63. RALGDS ENSGALG00000003412 4478 0.981 - - - - 0.981 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
64. MRPL16 ENSGALG00000029419 8033 0.98 - - - - 0.980 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
65. PSMG3 ENSGALG00000004203 11240 0.98 - - - - 0.980 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
66. BMP5 ENSGALG00000016293 2119 0.979 - - - - - - - 0.979 - - bone morphogenetic protein 5 [Source:NCBI gene;Acc:396053]
67. FNDC5 ENSGALG00000003567 3328 0.979 - - - - 0.979 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
68. ISCA1 ENSGALG00000012606 10342 0.979 - - - - - - - 0.979 - - iron-sulfur cluster assembly 1 [Source:NCBI gene;Acc:427463]
69. SDCBP ENSGALG00000015436 1228 0.979 - - - - 0.979 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
70. LOC426385 ENSGALG00000026301 2703 0.979 - - - - 0.979 - - - - - serine/threonine kinase 35-like, transcript variant X2
71. ASAP2 ENSGALG00000016419 1393 0.978 - - - - 0.978 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
72. PHTF1 ENSGALG00000001845 3276 0.978 - - - - 0.978 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
73. MED21 ENSGALG00000027435 5766 0.978 - - - - 0.978 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
74. BAHD1 ENSGALG00000033675 1779 0.978 - - - - 0.978 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
75. PTK2B ENSGALG00000016564 406 0.978 - - - - 0.978 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
76. ANKRD9 ENSGALG00000011376 525 0.978 - - - - 0.978 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
77. TIMMDC1 ENSGALG00000024480 9337 0.978 - - - - 0.978 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
78. MED8 ENSGALG00000009993 3095 0.978 - - - - 0.978 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
79. BRF1 ENSGALG00000011705 3406 0.978 - - - - 0.978 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
80. PRDM4 ENSGALG00000012619 876 0.978 - - - - 0.978 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
81. NDUFV1 ENSGALG00000042809 6222 0.977 - - - - 0.977 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
82. PREP2 PREP2 238 0.977 - - - - 0.977 - - - - -
83. RBM6 ENSGALG00000035578 1690 0.977 - - - - 0.977 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
84. KIF11 ENSGALG00000030597 5528 0.977 - - - - 0.977 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
85. RAD54B ENSGALG00000043597 1699 0.977 - - - - 0.977 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
86. C9orf85 ENSGALG00000026001 4110 0.977 - - - - 0.977 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
87. YARS ENSGALG00000003563 11093 0.977 - - - - 0.977 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
88. SMG7 ENSGALG00000004667 707 0.977 - - - - 0.977 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
89. RAMP3 ENSGALG00000037246 1187 0.977 - - - - 0.977 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
90. GTF2H1 ENSGALG00000042340 1553 0.976 - - - - 0.976 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
91. FUNDC2 ENSGALG00000029585 9334 0.976 - - - - 0.976 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
92. PITHD1 ENSGALG00000003986 11470 0.976 - - - - 0.976 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
93. TSPO2 ENSGALG00000003212 5141 0.976 - - - - 0.976 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
94. SAP30 ENSGALG00000036252 2032 0.976 - - - - 0.976 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
95. RBM34 ENSGALG00000029915 5618 0.976 - - - - 0.976 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
96. LZIC ENSGALG00000002616 9052 0.976 - - - - 0.976 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
97. ENSGALG00000027854 ENSGALG00000027854 5007 0.975 - - - - 0.975 - - - - -
98. ETS1 ENSGALG00000001143 7284 0.975 - - - - 0.975 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
99. PDIA5 ENSGALG00000011689 6913 0.975 - - - - - - - 0.975 - - protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
100. SLC25A14 ENSGALG00000004063 5574 0.975 - - - - - - - 0.975 - - solute carrier family 25 member 14 [Source:NCBI gene;Acc:422141]

There are 445 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA