Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UPF3A

Gene Name Gene ID Reads Annotation
UPF3A ENSGALG00000016815 48 UPF3A, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20332]











Genes with expression patterns similar to UPF3A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UPF3A ENSGALG00000016815 48 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 UPF3A, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20332]
2. ENSGALG00000019077 ENSGALG00000019077 49 1.745 - - - - - - - 0.998 - 0.747
3. ENSGALG00000019568 ENSGALG00000019568 25 1.714 - - - - - 0.716 - 0.998 - -
4. FAM161A ENSGALG00000008810 36 1.661 - - - - - - - 0.820 - 0.841 FAM161A, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:25808]
5. RAD54L2 ENSGALG00000003243 187 1.657 - - - - - 0.809 - - - 0.848 RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
6. FANCA ENSGALG00000000516 250 1.612 - - - - - 0.734 - - - 0.878 Fanconi anemia complementation group A [Source:NCBI gene;Acc:415854]
7. ENSGALG00000026930 ENSGALG00000026930 681 1.557 - - - - - 0.750 - - - 0.807
8. SLC35B3 ENSGALG00000012778 30 1.53 - - 0.768 - - - - 0.762 - - solute carrier family 35 member B3 [Source:HGNC Symbol;Acc:HGNC:21601]
9. GK5 ENSGALG00000002729 284 1.518 - - - - - 0.714 - - - 0.804 glycerol kinase 5 (putative) [Source:NCBI gene;Acc:424779]
10. ARL15 ENSGALG00000014911 13 1 - - - - - - - 1.000 - - ADP ribosylation factor like GTPase 15 [Source:HGNC Symbol;Acc:HGNC:25945]
11. OIP5 ENSGALG00000008579 27 1 - - - - - - - 1.000 - - Opa interacting protein 5 [Source:NCBI gene;Acc:423212]
12. C2orf50 ENSGALG00000046449 17 1 - - - - - - - 1.000 - - chromosome 2 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26324]
13. PCBP3 ENSGALG00000004394 5 1 - - - - - - - 1.000 - - poly(rC) binding protein 3, transcript variant X32
14. ENSGALG00000016962 ENSGALG00000016962 6 0.998 - - - - - - - 0.998 - -
15. MAF ENSGALG00000026258 45 0.998 - - - - - - - 0.998 - - MAF bZIP transcription factor [Source:NCBI gene;Acc:693248]
16. SFMBT1 ENSGALG00000001753 10 0.998 - - - - - - - 0.998 - - Scm like with four mbt domains 1 [Source:HGNC Symbol;Acc:HGNC:20255]
17. DIRAS2 ENSGALG00000005323 11 0.998 - - - - - - - 0.998 - - DIRAS family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:19323]
18. ENSGALG00000027427 ENSGALG00000027427 16 0.998 - - - - - - - 0.998 - -
19. KIAA1045 KIAA1045 23 0.998 - - - - - - - 0.998 - -
20. PSD ENSGALG00000042551 6 0.998 - - - - - - - 0.998 - - pleckstrin and Sec7 domain containing [Source:HGNC Symbol;Acc:HGNC:9507]
21. ENSGALG00000028328 ENSGALG00000028328 23 0.998 - - - - - - - 0.998 - -
22. DLL4 ENSGALG00000008514 3 0.998 - - - - - - - 0.998 - - delta like canonical Notch ligand 4 [Source:HGNC Symbol;Acc:HGNC:2910]
23. GLTSCR1L 18 0.998 - - - - - - - 0.998 - - GLTSCR1 like, transcript variant X4
24. KCNRG ENSGALG00000017012 4 0.998 - - - - - - - 0.998 - - potassium channel regulator [Source:HGNC Symbol;Acc:HGNC:18893]
25. MAL ENSGALG00000008552 4 0.99 - - - - - - - 0.990 - - mal, T cell differentiation protein [Source:NCBI gene;Acc:416707]
26. IL2RG ENSGALG00000005638 21 0.97 - - - - - - - 0.970 - - interleukin 2 receptor subunit gamma [Source:NCBI gene;Acc:395199]
27. GAK ENSGALG00000015352 99 0.97 - - - - - - - 0.970 - - cyclin G associated kinase [Source:HGNC Symbol;Acc:HGNC:4113]
28. SEC61A1 ENSGALG00000005966 9 0.968 - - - - - - - 0.968 - - Sec61 translocon alpha 1 subunit [Source:HGNC Symbol;Acc:HGNC:18276]
29. AKR AKR 68 0.959 - - - - - - - 0.959 - -
30. TMPRSS7 ENSGALG00000015389 12 0.952 - - - - - - - 0.952 - - transmembrane serine protease 7 [Source:HGNC Symbol;Acc:HGNC:30846]
31. RBM20 ENSGALG00000008697 20 0.952 - - - - - - - 0.952 - - RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
32. gga-mir-20b gga-mir-20b 7 0.947 - - 0.947 - - - - - - -
33. SLC7A11 ENSGALG00000009758 104 0.945 - - - - - - - 0.945 - - solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]
34. DSL1 DSL1 113 0.941 - - - - - - - 0.941 - -
35. HAO1 ENSGALG00000008845 22 0.941 - - - - - - - 0.941 - - hydroxyacid oxidase 1 [Source:NCBI gene;Acc:416728]
36. GIT1 ENSGALG00000023703 174 0.939 - - 0.939 - - - - - - - G protein-coupled receptor kinase interacting ArfGAP 1 [Source:NCBI gene;Acc:417584]
37. MUSTN1 ENSGALG00000001709 713 0.936 - - - - - - - 0.936 - - musculoskeletal, embryonic nuclear protein 1 [Source:NCBI gene;Acc:404773]
38. ENSGALG00000028720 ENSGALG00000028720 10 0.933 - - - - - - - 0.933 - -
39. PLCXD3 ENSGALG00000014845 247 0.931 - - - - - - - 0.931 - - phosphatidylinositol specific phospholipase C X domain containing 3 [Source:HGNC Symbol;Acc:HGNC:31822]
40. PRODH ENSGALG00000007728 1659 0.93 - - - - - - - - - 0.930 proline dehydrogenase 1
41. WNK4 ENSGALG00000032191 962 0.925 - - - - - - - - - 0.925 WNK lysine deficient protein kinase 4 [Source:HGNC Symbol;Acc:HGNC:14544]
42. ENSGALG00000026347 ENSGALG00000026347 2 0.924 - - 0.924 - - - - - - -
43. CNGA2 ENSGALG00000007282 2 0.924 - - 0.924 - - - - - - - cyclic nucleotide gated channel alpha 2 [Source:HGNC Symbol;Acc:HGNC:2149]
44. LRP3 ENSGALG00000004853 13 0.924 - - 0.924 - - - - - - - LDL receptor related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
45. TLL2 ENSGALG00000005519 10 0.924 - - 0.924 - - - - - - - tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:11844]
46. FHL2 ENSGALG00000016797 11 0.924 - - 0.924 - - - - - - - four and a half LIM domains 2 [Source:HGNC Symbol;Acc:HGNC:3703]
47. APBA1 ENSGALG00000015111 261 0.924 - - - - - - - - - 0.924 amyloid beta precursor protein binding family A member 1 [Source:HGNC Symbol;Acc:HGNC:578]
48. GAN ENSGALG00000013437 11 0.924 - - 0.924 - - - - - - - gigaxonin [Source:HGNC Symbol;Acc:HGNC:4137]
49. GPD1L2 ENSGALG00000012061 31 0.924 - - 0.924 - - - - - - - glycerol-3-phosphate dehydrogenase 1-like 2
50. TNFAIP3 ENSGALG00000013861 11 0.924 - - 0.924 - - - - - - - TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]
51. LOXHD1 ENSGALG00000037829 3 0.924 - - 0.924 - - - - - - - lipoxygenase homology domains 1 [Source:HGNC Symbol;Acc:HGNC:26521]
52. ENSGALG00000009041 ENSGALG00000009041 27 0.924 - - 0.924 - - - - - - -
53. ZMAT4 ENSGALG00000003470 2 0.924 - - 0.924 - - - - - - - zinc finger matrin-type 4 [Source:HGNC Symbol;Acc:HGNC:25844]
54. SNX8 ENSGALG00000004255 4 0.924 - - 0.924 - - - - - - - sorting nexin 8 [Source:HGNC Symbol;Acc:HGNC:14972]
55. POMGNT2 ENSGALG00000011518 36 0.924 - - 0.924 - - - - - - - protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [Source:NCBI gene;Acc:428446]
56. CLRN2 ENSGALG00000027453 3 0.924 - - 0.924 - - - - - - - clarin 2 [Source:HGNC Symbol;Acc:HGNC:33939]
57. PPP4R1 ENSGALG00000032092 1135 0.922 - - - - - - - - - 0.922 protein phosphatase 4 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:9320]
58. LRRC49 ENSGALG00000004059 29 0.919 - - 0.919 - - - - - - - leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]
59. C19orf44 C19orf44 24 0.917 - - - - - - - 0.917 - -
60. SYCP1 ENSGALG00000002511 13 0.909 - - 0.909 - - - - - - - synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
61. SLC17A6 ENSGALG00000039254 16 0.908 - - 0.908 - - - - - - - solute carrier family 17 member 6 [Source:NCBI gene;Acc:422971]
62. FAM178A FAM178A 2738 0.907 - - - - - - - - - 0.907
63. HOXB13 ENSGALG00000033154 71 0.906 - - 0.906 - - - - - - - homeobox B13 [Source:HGNC Symbol;Acc:HGNC:5112]
64. NFAT5 ENSGALG00000039300 29 0.903 - - - - - - - 0.903 - - nuclear factor of activated T-cells 5 [Source:NCBI gene;Acc:415866]
65. ARHGAP42 ENSGALG00000017196 240 0.903 - - - - - - - - - 0.903 Rho GTPase activating protein 42 [Source:HGNC Symbol;Acc:HGNC:26545]
66. DOCK9 ENSGALG00000016883 128 0.902 - - - - - - - - - 0.902 dedicator of cytokinesis 9 [Source:HGNC Symbol;Acc:HGNC:14132]
67. U4atac U4atac 23 0.901 - - 0.901 - - - - - - -
68. AP3M1 ENSGALG00000005070 712 0.897 - - - - - - - 0.897 - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
69. CALR3 ENSGALG00000003914 8 0.894 - - 0.894 - - - - - - - calreticulin 3 [Source:HGNC Symbol;Acc:HGNC:20407]
70. ENSGALG00000019837 ENSGALG00000019837 211 0.891 - - - - - - 0.891 - - -
71. SERAC1 ENSGALG00000013732 24 0.891 - - 0.891 - - - - - - - serine active site containing 1 [Source:HGNC Symbol;Acc:HGNC:21061]
72. ENSGALG00000008594 ENSGALG00000008594 54 0.891 - - - - - - 0.891 - - -
73. SLC35A3 12 0.887 - - 0.887 - - - - - - - solute carrier family 35 member A3, transcript variant X7
74. ENSGALG00000001323 ENSGALG00000001323 3 0.887 - - 0.887 - - - - - - -
75. B4GALNT3 ENSGALG00000012988 12 0.887 - - 0.887 - - - - - - - beta-1,4-N-acetyl-galactosaminyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:24137]
76. TRPM1 ENSGALG00000003849 5 0.887 - - 0.887 - - - - - - - transient receptor potential cation channel subfamily M member 1 [Source:HGNC Symbol;Acc:HGNC:7146]
77. TPCN2 ENSGALG00000007550 10 0.885 - - - - - - - - - 0.885 two pore segment channel 2 [Source:HGNC Symbol;Acc:HGNC:20820]
78. PAG1 ENSGALG00000034188 9 0.885 - - - - - - - - - 0.885 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 [Source:HGNC Symbol;Acc:HGNC:30043]
79. LANCL3 ENSGALG00000016265 9 0.884 - - - - - - - - - 0.884 LanC like 3 [Source:HGNC Symbol;Acc:HGNC:24767]
80. EHD4 ENSGALG00000008950 22 0.883 - - - - - - - - - 0.883 EH domain containing 4 [Source:HGNC Symbol;Acc:HGNC:3245]
81. TNPO1 ENSGALG00000015014 57 0.882 - - 0.882 - - - - - - - transportin 1 [Source:HGNC Symbol;Acc:HGNC:6401]
82. VPS13B 2293 0.881 - - - - - - - - - 0.881 vacuolar protein sorting 13 homolog B
83. S1PR1 ENSGALG00000005208 12 0.881 - - - - - - - - - 0.881 sphingosine-1-phosphate receptor 1 [Source:HGNC Symbol;Acc:HGNC:3165]
84. HERPUD1 ENSGALG00000001220 18 0.88 - - - - - - - - - 0.880 homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]
85. LPGAT1 ENSGALG00000009848 33 0.88 - - - - - - - - - 0.880 lysophosphatidylglycerol acyltransferase 1 [Source:NCBI gene;Acc:421375]
86. SNX18 ENSGALG00000014914 7 0.879 - - 0.879 - - - - - - - sorting nexin 18 [Source:HGNC Symbol;Acc:HGNC:19245]
87. TLN1 ENSGALG00000002548 489 0.877 - - - - - - - - - 0.877 talin 1 [Source:NCBI gene;Acc:395194]
88. PPP4R4 ENSGALG00000010950 19 0.876 - - - - - - - - - 0.876 protein phosphatase 4 regulatory subunit 4 [Source:HGNC Symbol;Acc:HGNC:23788]
89. GCM2 ENSGALG00000012768 6 0.875 - - 0.875 - - - - - - - glial cells missing homolog 2 [Source:NCBI gene;Acc:428478]
90. LONRF2 ENSGALG00000016768 193 0.873 - - - - - - - - - 0.873 LON peptidase N-terminal domain and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:24788]
91. PLEKHA1 ENSGALG00000034548 34 0.873 - - - - - - - - - 0.873 pleckstrin homology domain containing A1 [Source:HGNC Symbol;Acc:HGNC:14335]
92. FAM160A2 ENSGALG00000003416 23 0.873 - - - - - - - - - 0.873 family with sequence similarity 160 member A2 [Source:HGNC Symbol;Acc:HGNC:25378]
93. FIGF FIGF 576 0.872 - - - - - - - 0.872 - -
94. SIAT7E SIAT7E 13 0.872 - - - - - - - - - 0.872
95. WDR63 ENSGALG00000008696 15 0.871 - - - - - - - - - 0.871 WD repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:30711]
96. RPRD1A ENSGALG00000013129 332 0.87 - - - - - - - - - 0.870 regulation of nuclear pre-mRNA domain containing 1A [Source:NCBI gene;Acc:420953]
97. XYLT1 ENSGALG00000006757 169 0.87 - - - - - - - - - 0.870 xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
98. MOB2 ENSGALG00000030499 3658 0.869 - - - - - - - - - 0.869 MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
99. MRVI1 ENSGALG00000005632 450 0.866 - - - - - - - - - 0.866 murine retrovirus integration site 1 homolog [Source:HGNC Symbol;Acc:HGNC:7237]
100. ENSGALG00000027352 ENSGALG00000027352 69 0.865 - - - - - 0.865 - - - -

There are 340 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA