Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UPF2

Gene Name Gene ID Reads Annotation
UPF2 ENSGALG00000033772 9548 UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]











Genes with expression patterns similar to UPF2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UPF2 ENSGALG00000033772 9548 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]
2. MYO5A ENSGALG00000031987 2469 2.151 - - - - - - 0.731 - 0.708 0.712 myosin VA [Source:NCBI gene;Acc:396237]
3. ECI2 ENSGALG00000012809 3692 1.664 - - - - - - 0.813 - - 0.851 enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:HGNC:14601]
4. UBL3 ENSGALG00000017084 7417 1.652 - - - - - - 0.782 - - 0.870 ubiquitin like 3 [Source:NCBI gene;Acc:418921]
5. DCUN1D1 ENSGALG00000008807 6545 1.646 - - - - - - 0.735 0.911 - - defective in cullin neddylation 1 domain containing 1 [Source:NCBI gene;Acc:424963]
6. NAA30 ENSGALG00000012098 4681 1.642 - - - - - - - 0.913 - 0.729 N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
7. CWC22 ENSGALG00000009001 5984 1.642 - - - - - - - 0.826 - 0.816 CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
8. KTN1 ENSGALG00000012137 4058 1.629 - - - - - - 0.776 - 0.853 - kinectin 1 [Source:NCBI gene;Acc:396335]
9. FASTKD3 ENSGALG00000033521 1186 1.608 - - - - - - 0.763 - - 0.845 FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
10. TMEM237 ENSGALG00000008381 1317 1.6 - - - - - - - - 0.753 0.847 transmembrane protein 237 [Source:NCBI gene;Acc:424084]
11. GXYLT1 ENSGALG00000009532 5682 1.594 - - - - - - 0.762 - - 0.832 glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
12. CKAP4 ENSGALG00000012659 36398 1.587 - - - - - - - - 0.803 0.784 cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
13. GGA.31975 GGA.31975 8825 1.577 - - - - - - 0.748 - - 0.829
14. TMED7 ENSGALG00000028484 21008 1.57 - - - - - - 0.754 - - 0.816 Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
15. UCHL3 ENSGALG00000016921 16208 1.57 - - - - - - 0.730 - - 0.840 ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
16. MRPL50 ENSGALG00000015543 11649 1.565 - - - - - - 0.749 - - 0.816 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
17. FNBP1L ENSGALG00000005850 9219 1.556 - - - - - - 0.804 - - 0.752 formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
18. SP3 ENSGALG00000031796 8997 1.556 - - - - - - 0.763 - - 0.793 Sp3 transcription factor [Source:NCBI gene;Acc:395302]
19. SMC4 ENSGALG00000009553 15715 1.554 - - - - - - 0.742 - - 0.812 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
20. TXNDC5 ENSGALG00000012784 4678 1.553 - - - - - - 0.739 - - 0.814 thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
21. RAB5C ENSGALG00000003359 5597 1.55 - - - - - - 0.746 - - 0.804 RAB5C, member RAS oncogene family [Source:NCBI gene;Acc:395197]
22. FREM3 ENSGALG00000020561 1824 1.55 - - - - - - - - 0.731 0.819 FRAS1 related extracellular matrix 3
23. TMX4 ENSGALG00000028587 3513 1.549 - - - - - - 0.738 - - 0.811 thioredoxin related transmembrane protein 4 [Source:NCBI gene;Acc:416729]
24. LAPTM4A ENSGALG00000016479 15973 1.547 - - - - - - 0.798 0.749 - - lysosomal protein transmembrane 4 alpha [Source:NCBI gene;Acc:421959]
25. FBXO25 ENSGALG00000016359 1547 1.544 - - - - - - - - 0.756 0.788 F-box protein 25 [Source:HGNC Symbol;Acc:HGNC:13596]
26. MAP4K3 ENSGALG00000039720 5124 1.541 - - - - - - 0.736 0.805 - - mitogen-activated protein kinase kinase kinase kinase 3, transcript variant X10
27. GSTAL2 ENSGALG00000028551 4899 1.538 - - - - - - 0.738 - - 0.800 glutathione S-transferase alpha-like 2, transcript variant X4
28. HSPA12A ENSGALG00000009248 7783 1.532 - - - - - - - 0.763 - 0.769 heat shock protein family A (Hsp70) member 12A [Source:HGNC Symbol;Acc:HGNC:19022]
29. MMGT1 ENSGALG00000027199 5854 1.532 - - - - - - 0.775 - 0.757 - membrane magnesium transporter 1 [Source:HGNC Symbol;Acc:HGNC:28100]
30. BAG1 ENSGALG00000013157 4014 1.532 - - - - - - 0.703 - - 0.829 BCL2 associated athanogene 1 [Source:NCBI gene;Acc:420967]
31. SPATA20 ENSGALG00000006857 3506 1.529 - - - - - - 0.738 0.791 - - spermatogenesis associated 20 [Source:HGNC Symbol;Acc:HGNC:26125]
32. CHRAC1 ENSGALG00000040823 5695 1.525 - - - - - - 0.724 - - 0.801 chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
33. SMDT1 ENSGALG00000011897 9360 1.524 - - - - - - 0.740 - - 0.784 single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
34. NUBP1 ENSGALG00000007241 3791 1.514 - - - - - - 0.767 - - 0.747 nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
35. ZBED4 ENSGALG00000032659 5313 1.51 - - - - - - 0.796 - - 0.714 zinc finger BED-type containing 4 [Source:NCBI gene;Acc:417734]
36. TAF15 ENSGALG00000002060 12320 1.508 - - - - - - 0.778 0.730 - - TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
37. RAD21 ENSGALG00000029523 25658 1.505 - - - - - - 0.742 0.763 - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
38. FBXO5 ENSGALG00000013607 6156 1.504 - - - - - - 0.715 - - 0.789 F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
39. NEO1 ENSGALG00000001774 10165 1.496 - - - - - - 0.709 - - 0.787 neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
40. WDR53 ENSGALG00000006395 4938 1.496 - - - - - - 0.749 - - 0.747 WD repeat domain 53 [Source:HGNC Symbol;Acc:HGNC:28786]
41. SPTSSA ENSGALG00000025755 3361 1.49 - - - - - - 0.700 - - 0.790 serine palmitoyltransferase small subunit A [Source:NCBI gene;Acc:423318]
42. TMX3 ENSGALG00000013757 6387 1.488 - - - - - - 0.752 - - 0.736 Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
43. RPL7L1 ENSGALG00000011974 20292 1.482 - - - - - - 0.714 0.768 - - ribosomal protein L7 like 1 [Source:NCBI gene;Acc:422676]
44. WASF1 ENSGALG00000015066 5628 1.479 - - - - - - 0.777 - - 0.702 WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
45. CHMP5 ENSGALG00000013160 13347 1.468 - - - - - - 0.751 - - 0.717 charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
46. THRAP3 ENSGALG00000002144 21958 1.466 - - - - - - 0.717 0.749 - - thyroid hormone receptor associated protein 3 [Source:NCBI gene;Acc:419623]
47. gga-mir-7476 gga-mir-7476 20209 1.463 - - - - - - 0.713 - - 0.750
48. GLO1 ENSGALG00000010127 31662 1.453 - - - - - - - - 0.742 0.711 glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
49. EBNA1BP2 ENSGALG00000009045 17453 1.45 - - - - - - 0.709 - - 0.741 EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
50. MGST1 ENSGALG00000013098 17632 1.45 - - - - - - - 0.744 0.706 - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
51. SRF ENSGALG00000032029 6983 1.438 - - - - - - 0.734 - - 0.704 serum response factor [Source:NCBI gene;Acc:396103]
52. DNAJC3 ENSGALG00000016894 9048 1.438 - - - - - - 0.715 - - 0.723 DnaJ heat shock protein family (Hsp40) member C3 [Source:NCBI gene;Acc:418787]
53. PIGT ENSGALG00000003909 3804 1.428 - - - - - - 0.724 - - 0.704 phosphatidylinositol glycan anchor biosynthesis class T [Source:HGNC Symbol;Acc:HGNC:14938]
54. GTLF3B GTLF3B 5079 0.97 - - - - - - - 0.970 - -
55. MAD2L1BP ENSGALG00000027871 7835 0.97 - - - - - - - 0.970 - - MAD2L1 binding protein [Source:HGNC Symbol;Acc:HGNC:21059]
56. POLR2E ENSGALG00000002591 26405 0.919 - - - - - - - 0.919 - - RNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]
57. GPX8 ENSGALG00000026704 4497 0.913 - - - - - - - - - 0.913 glutathione peroxidase 8 (putative) [Source:HGNC Symbol;Acc:HGNC:33100]
58. RAD51AP1 ENSGALG00000017290 3807 0.904 - - - - - - - 0.904 - - RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]
59. PNPT1 ENSGALG00000043545 1306 0.902 - - - - - - - - - 0.902 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
60. CPSF2 ENSGALG00000010783 5236 0.895 - - - - - - - - - 0.895 cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]
61. AFG3L2 ENSGALG00000013853 1138 0.888 - - - - - - - - - 0.888 AFG3 like matrix AAA peptidase subunit 2 [Source:HGNC Symbol;Acc:HGNC:315]
62. YAF2 ENSGALG00000009540 8452 0.885 - - - - - - - - - 0.885 YY1 associated factor 2 [Source:NCBI gene;Acc:417790]
63. MTERFD1 MTERFD1 3640 0.881 - - - - - - - - - 0.881
64. ENSGALG00000009044 ENSGALG00000009044 14492 0.88 - - - - - - - - - 0.880
65. 5 5 4209 0.876 - - - - - - - - - 0.876
66. MAN2A1 ENSGALG00000000255 4543 0.874 - - - - - - - - - 0.874 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
67. PRDM4 ENSGALG00000012619 876 0.872 - - - - - - - - - 0.872 PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
68. SNORA73 SNORA73 1644 0.87 - - - - - - - - - 0.870
69. CAMSAP2 ENSGALG00000002145 6109 0.869 - - - - - - - - - 0.869 calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
70. CTSO ENSGALG00000009373 4186 0.864 - - - - - - - - - 0.864 cathepsin O [Source:NCBI gene;Acc:422410]
71. CDH2 ENSGALG00000015132 2848 0.861 - - - - - - - - 0.861 - cadherin 2 [Source:NCBI gene;Acc:414745]
72. CP ENSGALG00000030773 119 0.861 - - - - - - - - - 0.861 ceruloplasmin [Source:HGNC Symbol;Acc:HGNC:2295]
73. LPCAT2 ENSGALG00000003574 893 0.856 - - - - - - - - - 0.856 lysophosphatidylcholine acyltransferase 2 [Source:NCBI gene;Acc:415716]
74. N4BP2 ENSGALG00000014281 3144 0.856 - - - - - - - - - 0.856 NEDD4 binding protein 2, transcript variant X6
75. LACTB2 ENSGALG00000038745 3460 0.854 - - - - - - - - - 0.854 lactamase beta 2 [Source:NCBI gene;Acc:420178]
76. C26H6ORF89 C26H6ORF89 1826 0.854 - - - - - - - - - 0.854
77. NSUN4 ENSGALG00000010360 3567 0.854 - - - - - - - 0.854 - - NOP2/Sun RNA methyltransferase family member 4 [Source:NCBI gene;Acc:424613]
78. ALMS1 ENSGALG00000044620 570 0.852 - - - - - - - - - 0.852 ALMS1, centrosome and basal body associated protein, transcript variant X1
79. TWSG1 ENSGALG00000008400 1869 0.852 - - - - - - - - - 0.852 twisted gastrulation BMP signaling modulator 1 [Source:NCBI gene;Acc:374024]
80. MAN1A2 451 0.851 - - - - - - - - - 0.851 mannosidase alpha class 1A member 2
81. HEXA ENSGALG00000043828 4789 0.851 - - - - - - - - - 0.851 hexosaminidase subunit alpha [Source:NCBI gene;Acc:415320]
82. USP24 ENSGALG00000010805 576 0.851 - - - - - - - - - 0.851 ubiquitin specific peptidase 24 [Source:HGNC Symbol;Acc:HGNC:12623]
83. CLSPN ENSGALG00000002346 2590 0.851 - - - - - - - - - 0.851 claspin [Source:NCBI gene;Acc:428223]
84. RTN4R ENSGALG00000007732 1515 0.85 - - - - - - - - - 0.850 reticulon 4 receptor
85. NARS ENSGALG00000040506 9506 0.849 - - - - - - - - - 0.849 asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
86. RBM5 30998 0.848 - - - - - - - - - 0.848 RNA binding motif protein 5, transcript variant X1
87. RAD18 ENSGALG00000008368 7214 0.848 - - - - - - - - - 0.848 RAD18, E3 ubiquitin protein ligase [Source:NCBI gene;Acc:416114]
88. PREX2 ENSGALG00000042354 134 0.848 - - - - - - - - - 0.848 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
89. SPDL1 ENSGALG00000001942 4403 0.847 - - - - - - - - - 0.847 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
90. HOTAIRM1 HOTAIRM1 4335 0.847 - - - - - - - - - 0.847
91. CPNE1 ENSGALG00000040856 610 0.847 - - - - - - - - - 0.847 copine 1 [Source:NCBI gene;Acc:419134]
92. FAM98A ENSGALG00000010428 9585 0.847 - - - - - - 0.847 - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
93. DCAF5 ENSGALG00000009463 1297 0.847 - - - - - - - - - 0.847 DDB1 and CUL4 associated factor 5 [Source:HGNC Symbol;Acc:HGNC:20224]
94. CETN1 ENSGALG00000026741 7243 0.847 - - - - - - - - - 0.847 centrin 1 [Source:NCBI gene;Acc:422668]
95. SNRNP27 ENSGALG00000013883 22212 0.846 - - - - - - 0.846 - - - small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:HGNC Symbol;Acc:HGNC:30240]
96. MYH1D ENSGALG00000027323 365 0.846 - - - - - - - - - 0.846 Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
97. PLEKHG1 ENSGALG00000012395 2708 0.846 - - - - - - - - - 0.846 pleckstrin homology and RhoGEF domain containing G1 [Source:HGNC Symbol;Acc:HGNC:20884]
98. TP53BP1 ENSGALG00000042201 708 0.845 - - - - - - - - - 0.845 tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11999]
99. TFDP1 ENSGALG00000016823 17019 0.845 - - - - - - 0.845 - - - transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
100. TMEM130 ENSGALG00000003569 949 0.845 - - - - - - - - - 0.845 transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]

There are 764 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA