Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UPF1

Gene Name Gene ID Reads Annotation
UPF1 ENSGALG00000003220 9496 UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]











Genes with expression patterns similar to UPF1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UPF1 ENSGALG00000003220 9496 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
2. XRN1 ENSGALG00000002706 4014 1.702 - - - - - - 0.943 0.759 - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
3. RBM12B ENSGALG00000035129 4314 1.696 - - - - - - 0.891 0.805 - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
4. CREPT CREPT 17142 1.673 - - - - - - 0.812 0.861 - -
5. OGFOD1 6926 1.652 - - - - - - 0.914 0.738 - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
6. UTP3 ENSGALG00000011553 8814 1.624 - - - - - - 0.857 0.767 - - UTP3, small subunit processome component homolog (S. cerevisiae)
7. SIRT1 ENSGALG00000002761 9028 1.606 - - - - - - 0.899 0.707 - - sirtuin 1 [Source:NCBI gene;Acc:423646]
8. MCM4 ENSGALG00000012915 13151 1.53 - - - - - - 0.763 0.767 - - minichromosome maintenance complex component 4
9. CENPF ENSGALG00000009690 10429 0.951 - - - - - - 0.951 - - - centromere protein F [Source:NCBI gene;Acc:395357]
10. RPA1 ENSGALG00000003072 8023 0.951 - - - - - - 0.951 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
11. EI24 ENSGALG00000038097 24081 0.94 - - - - - - 0.940 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
12. CPT2 ENSGALG00000010681 3211 0.934 - - - - - - - 0.934 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
13. MRE11A MRE11A 5754 0.932 - - - - - - 0.932 - - -
14. SF3A3 ENSGALG00000001540 9664 0.931 - - - - - - 0.931 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
15. SDF4 ENSGALG00000001872 6382 0.928 - - - - - - 0.928 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
16. PEPD ENSGALG00000004899 9785 0.924 - - - - - - 0.924 - - - peptidase D [Source:NCBI gene;Acc:415776]
17. ZMYND11 ENSGALG00000006599 5740 0.924 - - - - - - 0.924 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
18. SOD2 ENSGALG00000011661 13178 0.923 - - - - - - 0.923 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
19. WBP11 ENSGALG00000011745 11182 0.922 - - - - - - 0.922 - - - WW domain binding protein 11, transcript variant X1
20. IBTK ENSGALG00000015864 3154 0.921 - - - - - - - 0.921 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
21. PPP3R1 ENSGALG00000023648 3417 0.92 - - - - - - 0.920 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
22. NDUFA9 ENSGALG00000017282 14358 0.919 - - - - - - 0.919 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
23. MAP1LC3A ENSGALG00000038721 2230 0.918 - - - - - - 0.918 - - - microtubule associated protein 1 light chain 3 alpha
24. TM9SF3 ENSGALG00000005534 15290 0.917 - - - - - - 0.917 - - - transmembrane 9 superfamily member 3
25. DNA2 ENSGALG00000004037 5426 0.917 - - - - - - 0.917 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
26. SCRN1 ENSGALG00000011176 3783 0.916 - - - - - - 0.916 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
27. KCTD9 ENSGALG00000000275 3455 0.914 - - - - - - 0.914 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
28. LIMS1 ENSGALG00000029970 7244 0.914 - - - - - - - 0.914 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
29. ARHGAP29 ENSGALG00000005683 3622 0.912 - - - - - - 0.912 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
30. STOML2 STOML2 15566 0.912 - - - - - - - 0.912 - -
31. DYNC1LI1 ENSGALG00000011491 11011 0.91 - - - - - - 0.910 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
32. MRPS11 ENSGALG00000006777 16009 0.909 - - - - - - 0.909 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
33. RILPL2 ENSGALG00000003321 5632 0.908 - - - - - - 0.908 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
34. AKAP7 ENSGALG00000029794 3287 0.908 - - - - - - 0.908 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
35. TMEM108 ENSGALG00000036412 2903 0.908 - - - - - - 0.908 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
36. AP2B1 ENSGALG00000042125 13229 0.907 - - - - - - 0.907 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
37. NCOA4 ENSGALG00000002066 10544 0.907 - - - - - - 0.907 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
38. AIP ENSGALG00000040247 4166 0.907 - - - - - - - 0.907 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
39. ENSGALG00000027854 ENSGALG00000027854 5007 0.906 - - - - - - 0.906 - - -
40. ATE1 ENSGALG00000009502 3751 0.906 - - - - - - 0.906 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
41. KIF20A ENSGALG00000035030 10249 0.906 - - - - - - 0.906 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
42. CLPTM1L ENSGALG00000013187 9733 0.906 - - - - - - 0.906 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
43. LAP3 ENSGALG00000006334 21076 0.905 - - - - - - 0.905 - - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
44. KIF15 ENSGALG00000036645 9946 0.905 - - - - - - 0.905 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
45. LATS2 4776 0.904 - - - - - - 0.904 - - - large tumor suppressor kinase 2
46. SHQ1 ENSGALG00000007798 1982 0.904 - - - - - - 0.904 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
47. MYST2 MYST2 8078 0.902 - - - - - - 0.902 - - -
48. E2F6 ENSGALG00000016454 4747 0.902 - - - - - - 0.902 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
49. POLR3E ENSGALG00000007008 4010 0.902 - - - - - - 0.902 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
50. FASTKD2 ENSGALG00000008529 7439 0.901 - - - - - - 0.901 - - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
51. gga-mir-6643 ENSGALG00000027935 4442 0.901 - - - - - - 0.901 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
52. ARID4A ENSGALG00000012037 8554 0.901 - - - - - - 0.901 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
53. BTAF1 ENSGALG00000030598 3556 0.9 - - - - - - 0.900 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
54. TRAM1 ENSGALG00000041112 22876 0.9 - - - - - - 0.900 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
55. GCLM ENSGALG00000005782 15789 0.899 - - - - - - 0.899 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
56. DISP1 3281 0.898 - - - - - - 0.898 - - - dispatched RND transporter family member 1, transcript variant X3
57. ISCU ENSGALG00000004869 6852 0.898 - - - - - - - 0.898 - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
58. SNX12 ENSGALG00000005659 9503 0.897 - - - - - - - 0.897 - - sorting nexin 12 [Source:NCBI gene;Acc:428704]
59. ATN1 ENSGALG00000014554 3270 0.897 - - - - - - 0.897 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
60. TBCCD1 ENSGALG00000006566 2696 0.897 - - - - - - 0.897 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
61. METTL11A METTL11A 11876 0.896 - - - - - - 0.896 - - -
62. HDGFL3 ENSGALG00000006036 13576 0.896 - - - - - - 0.896 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
63. YBX1 ENSGALG00000004848 20992 0.895 - - - - - - 0.895 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
64. CCND1 ENSGALG00000007555 6715 0.895 - - - - - - 0.895 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
65. MMP15 ENSGALG00000038758 49988 0.894 - - - - - - - 0.894 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
66. FBXL17 ENSGALG00000000276 2443 0.894 - - - - - - - 0.894 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
67. ITFG2 ENSGALG00000014335 1896 0.894 - - - - - - - 0.894 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
68. RCAN3 ENSGALG00000004282 7778 0.894 - - - - - - - 0.894 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
69. CLMP ENSGALG00000006507 8079 0.894 - - - - - - - 0.894 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
70. AGRN ENSGALG00000039193 8135 0.893 - - - - - - - 0.893 - - agrin [Source:NCBI gene;Acc:396538]
71. TXNDC11 ENSGALG00000003154 2224 0.893 - - - - - - - 0.893 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
72. ARL6IP5 ENSGALG00000038904 12956 0.893 - - - - - - 0.893 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
73. BFAR ENSGALG00000003111 1778 0.892 - - - - - - 0.892 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
74. ABCD3 ENSGALG00000005647 4844 0.892 - - - - - - 0.892 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
75. SEMA4B ENSGALG00000008297 11202 0.892 - - - - - - 0.892 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
76. MOB2 ENSGALG00000030499 3658 0.892 - - - - - - 0.892 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
77. EIF4G3 ENSGALG00000010084 5881 0.892 - - - - - - 0.892 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
78. IRAK2 ENSGALG00000008407 5934 0.891 - - - - - - 0.891 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
79. CLCN3 ENSGALG00000009674 3704 0.891 - - - - - - 0.891 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
80. MOB1B ENSGALG00000011573 567 0.89 - - - - - - 0.890 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
81. TTC8 ENSGALG00000010663 1556 0.889 - - - - - - - 0.889 - - tetratricopeptide repeat domain 8 [Source:HGNC Symbol;Acc:HGNC:20087]
82. SMG8 ENSGALG00000005093 5557 0.889 - - - - - - - 0.889 - - SMG8 nonsense mediated mRNA decay factor
83. PMM2 ENSGALG00000007326 8260 0.888 - - - - - - 0.888 - - - phosphomannomutase 2 [Source:NCBI gene;Acc:427679]
84. BPTF ENSGALG00000038222 7521 0.888 - - - - - - 0.888 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
85. COPE ENSGALG00000003153 19444 0.888 - - - - - - 0.888 - - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
86. AK6 ENSGALG00000020534 4791 0.887 - - - - - - 0.887 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
87. THOC2 ENSGALG00000008507 9501 0.887 - - - - - - 0.887 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
88. ALAS1 3660 0.887 - - - - - - - 0.887 - - 5'-aminolevulinate synthase 1, transcript variant X1
89. NDUFB8 ENSGALG00000005704 5781 0.886 - - - - - - 0.886 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
90. RRN3 ENSGALG00000041989 3934 0.886 - - - - - - 0.886 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
91. VPS13D ENSGALG00000034777 2350 0.886 - - - - - - - 0.886 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
92. ENSGALG00000021439 ENSGALG00000021439 628 0.885 - - - - - - - 0.885 - -
93. H2AFY_1 ENSGALG00000040141 4895 0.884 - - - - - - 0.884 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
94. SREBF2 ENSGALG00000041687 4519 0.883 - - - - - - 0.883 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
95. MED6 ENSGALG00000029743 9414 0.883 - - - - - - 0.883 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
96. LARP1 ENSGALG00000040109 14808 0.883 - - - - - - 0.883 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
97. PNO1 ENSGALG00000009093 11153 0.882 - - - - - - 0.882 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
98. MSRA ENSGALG00000028032 2607 0.88 - - - - - - 0.880 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
99. TCP1 ENSGALG00000011637 73216 0.88 - - - - - - 0.880 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
100. DHODH ENSGALG00000000802 3226 0.88 - - - - - - - 0.880 - - dihydroorotate dehydrogenase (quinone) [Source:NCBI gene;Acc:415876]

There are 274 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA