Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UBFD1

Gene Name Gene ID Reads Annotation
UBFD1 ENSGALG00000006117 5242 ubiquitin family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30565]











Genes with expression patterns similar to UBFD1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UBFD1 ENSGALG00000006117 5242 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30565]
2. MRPL50 ENSGALG00000015543 11649 1.577 - - - - - - 0.794 0.783 - - mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
3. NDUFA12 ENSGALG00000011325 19807 1.571 - - - - - - 0.812 0.759 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
4. ENSGALG00000020510 ENSGALG00000020510 4037 1.561 - - - - - - 0.811 0.750 - -
5. MRPL2 ENSGALG00000008597 16500 1.558 - - - - - - 0.755 0.803 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
6. CHRAC1 ENSGALG00000040823 5695 1.545 - - - - - - 0.775 0.770 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
7. SUCLA2 ENSGALG00000016993 4735 1.543 - - - - - - 0.766 0.777 - - succinate-CoA ligase ADP-forming beta subunit [Source:NCBI gene;Acc:418857]
8. SPCS1 ENSGALG00000001655 7718 1.538 - - - - - - 0.802 0.736 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
9. ADI1 ENSGALG00000025796 8636 1.511 - - - - - - 0.728 0.783 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
10. RIOK2 ENSGALG00000015288 6280 1.511 - - - - - - 0.732 0.779 - - RIO kinase 2 [Source:NCBI gene;Acc:427278]
11. TM4SF18 4553 1.508 - - - - - - 0.791 0.717 - - transmembrane 4 L six family member 18, transcript variant X2
12. SF3B3 ENSGALG00000002531 19397 1.506 - - - - - - 0.721 0.785 - - splicing factor 3b subunit 3, transcript variant X2
13. CDK2AP1 ENSGALG00000034919 5469 1.503 - - - - - - 0.736 0.767 - - cyclin dependent kinase 2 associated protein 1 [Source:NCBI gene;Acc:416826]
14. FAM18B1 ENSGALG00000001335 5177 1.502 - - - - - - 0.757 0.745 - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
15. FAM177A1 ENSGALG00000010046 4318 1.501 - - - - - - 0.728 0.773 - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
16. DCTD ENSGALG00000010674 8396 1.501 - - - - - - 0.776 0.725 - - dCMP deaminase [Source:NCBI gene;Acc:422556]
17. PAPSS1 ENSGALG00000010542 5631 1.5 - - - - - - 0.734 0.766 - - 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:HGNC Symbol;Acc:HGNC:8603]
18. FANCL ENSGALG00000030022 7423 1.499 - - - - - - 0.758 0.741 - - FA complementation group L [Source:NCBI gene;Acc:421202]
19. PPFIA1 ENSGALG00000035774 5258 1.499 - - - - - - 0.738 0.761 - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
20. C11H16ORF80 C11H16ORF80 18673 1.494 - - - - - - 0.755 0.739 - -
21. QTRTD1 QTRTD1 10765 1.493 - - - - - - 0.761 0.732 - -
22. CCNDBP1 ENSGALG00000004837 11520 1.492 - - - - - - 0.746 0.746 - - cyclin D1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:1587]
23. GPR162 ENSGALG00000022926 7181 1.489 - - - - - - 0.743 0.746 - - G protein-coupled receptor 162 [Source:HGNC Symbol;Acc:HGNC:16693]
24. USE1 ENSGALG00000003703 4680 1.484 - - - - - - 0.707 0.777 - - unconventional SNARE in the ER 1 [Source:NCBI gene;Acc:420134]
25. GTF2H2 ENSGALG00000002399 2361 1.484 - - - - - - 0.751 0.733 - - general transcription factor IIH subunit 2, transcript variant X2
26. STRN3 ENSGALG00000040464 9045 1.477 - - - - - - 0.705 0.772 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
27. TIMMDC1 ENSGALG00000024480 9337 1.476 - - - - - - 0.743 0.733 - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
28. DNAJA4 ENSGALG00000036850 6847 1.475 - - - - - - 0.749 0.726 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
29. CENPK ENSGALG00000014753 12414 1.47 - - - - - - 0.741 0.729 - - centromere protein K [Source:NCBI gene;Acc:427162]
30. SMARCA1 ENSGALG00000008431 4000 1.466 - - - - - - 0.750 - 0.716 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]
31. RCN2 ENSGALG00000039284 17848 1.464 - - - - - - 0.709 0.755 - - reticulocalbin 2 [Source:NCBI gene;Acc:415350]
32. RRP36 ENSGALG00000028056 7560 1.463 - - - - - - 0.726 0.737 - - ribosomal RNA processing 36
33. IARS ENSGALG00000004813 12936 1.454 - - - - - - 0.707 0.747 - - isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:5330]
34. ATP6AP1 ENSGALG00000008836 4343 1.452 - - - - - - 0.709 0.743 - - ATPase H+ transporting accessory protein 1 [Source:NCBI gene;Acc:427854]
35. MFAP1 ENSGALG00000028295 6043 1.45 - - - - - - 0.708 0.742 - - microfibrillar associated protein 1 [Source:NCBI gene;Acc:415586]
36. SRBD1 ENSGALG00000009990 4568 1.447 - - - - - - 0.714 0.733 - - S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
37. ZCCHC9 ENSGALG00000015603 3118 1.446 - - - - - - 0.728 0.718 - - zinc finger CCHC-type containing 9 [Source:HGNC Symbol;Acc:HGNC:25424]
38. MRPL55 5995 1.444 - - - - - - 0.723 0.721 - - mitochondrial ribosomal protein L55
39. ANAPC5 ENSGALG00000004179 4087 1.438 - - - - - - 0.709 0.729 - - anaphase promoting complex subunit 5 [Source:NCBI gene;Acc:416842]
40. DDX10 ENSGALG00000017156 5657 1.436 - - - - - - 0.718 0.718 - - DEAD-box helicase 10 [Source:NCBI gene;Acc:418965]
41. SLC25A24 ENSGALG00000001938 3671 1.435 - - - - - - 0.702 0.733 - - solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
42. POLR2B ENSGALG00000011387 4864 1.427 - - - - - - 0.707 0.720 - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
43. FANCG ENSGALG00000002009, ENSGALG00000034209 2528 1.417 - - - - - - 0.716 0.701 - - Fanconi anemia complementation group G, transcript variant X1
44. RANBP9 ENSGALG00000012696 4871 1.407 - - - - - - 0.702 0.705 - - RAN binding protein 9 [Source:HGNC Symbol;Acc:HGNC:13727]
45. NOC4L ENSGALG00000002272 9644 0.874 - - - - - - 0.874 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
46. ACTR2 ENSGALG00000008779 17812 0.874 - - - - - - 0.874 - - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
47. RANBP1 ENSGALG00000002107 17715 0.861 - - - - - - 0.861 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
48. AHCTF1 ENSGALG00000010630 4809 0.86 - - - - - - 0.860 - - - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]
49. RPF2 ENSGALG00000037087 12788 0.855 - - - - - - 0.855 - - - ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
50. Sep-05 Sep-05 5887 0.855 - - - - - - 0.855 - - -
51. TIMM13 ENSGALG00000028937 32013 0.849 - - - - - - - 0.849 - - translocase of inner mitochondrial membrane 13 [Source:NCBI gene;Acc:100859352]
52. RBBP4 ENSGALG00000003522 72455 0.847 - - - - - - 0.847 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
53. EHD3 ENSGALG00000009086 14407 0.843 - - - - - - 0.843 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
54. RPA3 ENSGALG00000010700 6212 0.841 - - - - - - - 0.841 - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
55. PRELID1 ENSGALG00000002990 55592 0.841 - - - - - - 0.841 - - - PRELI domain containing 1 [Source:NCBI gene;Acc:395819]
56. METAP2 ENSGALG00000011377 16311 0.839 - - - - - - 0.839 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
57. BET1L ENSGALG00000004172 5305 0.838 - - - - - - 0.838 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
58. CZH9ORF80 CZH9ORF80 12760 0.837 - - - - - - 0.837 - - -
59. ACTR8 ENSGALG00000005385 3647 0.836 - - - - - - - 0.836 - - ARP8 actin related protein 8 homolog [Source:HGNC Symbol;Acc:HGNC:14672]
60. ATG3 ENSGALG00000015204 11277 0.834 - - - - - - 0.834 - - - autophagy related 3 [Source:NCBI gene;Acc:418369]
61. NSUN2 ENSGALG00000013064 2005 0.833 - - - - - - - 0.833 - - NOP2/Sun RNA methyltransferase family member 2 [Source:NCBI gene;Acc:420938]
62. SCCPDH ENSGALG00000010641 8624 0.831 - - - - - - 0.831 - - - saccharopine dehydrogenase (putative) [Source:NCBI gene;Acc:421485]
63. APIP ENSGALG00000031286 6838 0.83 - - - - - - 0.830 - - - APAF1 interacting protein [Source:NCBI gene;Acc:428860]
64. SHISA5 ENSGALG00000004661 8573 0.828 - - - - - - 0.828 - - - shisa family member 5 [Source:NCBI gene;Acc:415948]
65. TMEM70 ENSGALG00000033568 10720 0.828 - - - - - - 0.828 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
66. EIF4A2 ENSGALG00000008684 58507 0.826 - - - - - - 0.826 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
67. MLST8 ENSGALG00000005878 8116 0.825 - - - - - - 0.825 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
68. SMC4 ENSGALG00000009553 15715 0.823 - - - - - - 0.823 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
69. ZMPSTE24 ENSGALG00000000855 5144 0.821 - - - - - - - 0.821 - - zinc metallopeptidase STE24 [Source:HGNC Symbol;Acc:HGNC:12877]
70. PAPD7 ENSGALG00000013061 2031 0.821 - - - - - - - 0.821 - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
71. GPC4 ENSGALG00000006080 56498 0.82 - - - - - - 0.820 - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
72. NUP85 ENSGALG00000007974 21249 0.82 - - - - - - - 0.820 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
73. ZNF622 ENSGALG00000037171 5706 0.819 - - - - - - - 0.819 - - zinc finger protein 622 [Source:NCBI gene;Acc:373921]
74. DIMT1 ENSGALG00000020569 5150 0.818 - - - - - - 0.818 - - - DIM1 dimethyladenosine transferase 1 homolog [Source:HGNC Symbol;Acc:HGNC:30217]
75. CYB5A ENSGALG00000013708 8287 0.818 - - - - - - 0.818 - - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
76. CORO2B ENSGALG00000008043 2683 0.817 - - - - - - - 0.817 - - coronin 2B [Source:HGNC Symbol;Acc:HGNC:2256]
77. SSRP1 ENSGALG00000007520 18849 0.817 - - - - - - - 0.817 - - structure specific recognition protein 1 [Source:NCBI gene;Acc:396509]
78. ENSGALG00000002903 ENSGALG00000002903 18304 0.817 - - - - - - 0.817 - - -
79. PSMB2 ENSGALG00000026421 51885 0.816 - - - - - - 0.816 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
80. EIF2B3 ENSGALG00000010140 7992 0.816 - - - - - - 0.816 - - - eukaryotic translation initiation factor 2B subunit gamma [Source:NCBI gene;Acc:424587]
81. ARPC2 ENSGALG00000011452 7338 0.815 - - - - - - 0.815 - - - actin related protein 2/3 complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:705]
82. COMMD4 ENSGALG00000001572 31664 0.815 - - - - - - 0.815 - - - COMM domain containing 4 [Source:NCBI gene;Acc:770048]
83. TRAPPC4 ENSGALG00000007707 3568 0.814 - - - - - - - 0.814 - - trafficking protein particle complex 4 [Source:NCBI gene;Acc:419788]
84. NEK6 ENSGALG00000001118 20333 0.814 - - - - - - 0.814 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
85. PSPC1 ENSGALG00000017142 13036 0.813 - - - - - - 0.813 - - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
86. ABL ABL 9532 0.813 - - - - - - 0.813 - - -
87. OSBPL11 ENSGALG00000012059 2523 0.813 - - - - - - - 0.813 - - oxysterol binding protein like 11 [Source:HGNC Symbol;Acc:HGNC:16397]
88. ATL2 ENSGALG00000037289 7926 0.813 - - - - - - - 0.813 - - atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
89. SNRNP40 ENSGALG00000000615 32298 0.813 - - - - - - 0.813 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
90. CCNE1 ENSGALG00000004494 4945 0.812 - - - - - - - 0.812 - - cyclin E1 [Source:NCBI gene;Acc:426117]
91. NUPL1 NUPL1 8197 0.812 - - - - - - 0.812 - - -
92. YWHAZ ENSGALG00000031387 84985 0.812 - - - - - - 0.812 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
93. BRP44L BRP44L 30452 0.81 - - - - - - 0.810 - - -
94. SUCO ENSGALG00000003081 4116 0.81 - - - - - - - 0.810 - - SUN domain containing ossification factor [Source:HGNC Symbol;Acc:HGNC:1240]
95. FAM207A ENSGALG00000007513 8748 0.81 - - - - - - - 0.810 - - family with sequence similarity 207 member A [Source:HGNC Symbol;Acc:HGNC:15811]
96. EIF2B1 ENSGALG00000003259 9491 0.809 - - - - - - 0.809 - - - eukaryotic translation initiation factor 2B subunit alpha [Source:HGNC Symbol;Acc:HGNC:3257]
97. LSG1 ENSGALG00000007058 4591 0.807 - - - - - - - 0.807 - - large 60S subunit nuclear export GTPase 1 [Source:NCBI gene;Acc:424897]
98. TIMM22 ENSGALG00000004383 7619 0.807 - - - - - - 0.807 - - - translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]
99. AGFG1 ENSGALG00000003052 4766 0.807 - - - - - - 0.807 - - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
100. MED7 ENSGALG00000003870 4244 0.806 - - - - - - - 0.806 - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]

There are 624 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA