Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for U3

Gene Name Gene ID Reads Annotation
U3 U3 1604











Genes with expression patterns similar to U3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. U3 U3 1604 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. B3GALTL B3GALTL 4128 1.618 - - 0.830 - - - - - - 0.788
3. TXNDC12 ENSGALG00000010569 13822 1.608 - - 0.814 - - - - - - 0.794 thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
4. CLN8 ENSGALG00000039606 4209 1.541 - - 0.809 - - - - 0.732 - - CLN8, transmembrane ER and ERGIC protein [Source:NCBI gene;Acc:421902]
5. RHOT1 ENSGALG00000003397 5149 1.487 - - 0.725 - - - - - - 0.762 ras homolog family member T1 [Source:NCBI gene;Acc:417410]
6. PACSIN3 ENSGALG00000008231 5423 1.423 - - 0.706 - - - - - - 0.717 protein kinase C and casein kinase substrate in neurons 3 [Source:NCBI gene;Acc:423186]
7. SPERT ENSGALG00000016981 145 0.959 - - - - - - - - - 0.959 spermatid associated [Source:NCBI gene;Acc:418848]
8. SH3BP2 ENSGALG00000015665 431 0.953 - - - - - - - - - 0.953 SH3 domain binding protein 2 [Source:NCBI gene;Acc:422883]
9. CCNI ENSGALG00000011457 3203 0.94 - - - - - - - - - 0.940 cyclin I [Source:HGNC Symbol;Acc:HGNC:1595]
10. KLC1 ENSGALG00000011528 1621 0.938 - - - - - - - - - 0.938 kinesin light chain 1, transcript variant X6
11. ARID1B ENSGALG00000013683 3397 0.936 - - - - - - - - - 0.936 AT-rich interaction domain 1B [Source:HGNC Symbol;Acc:HGNC:18040]
12. CD2AP ENSGALG00000016720 8852 0.935 - - - - - - - - - 0.935 Gallus gallus CD2 associated protein (CD2AP), mRNA. [Source:RefSeq mRNA;Acc:NM_001318403]
13. WDR82 ENSGALG00000025904 4783 0.922 - - - - - - - - - 0.922 WD repeat domain 82 [Source:NCBI gene;Acc:415942]
14. TCF25 ENSGALG00000000129 7587 0.909 - - - - - - - - - 0.909 transcription factor 25 [Source:HGNC Symbol;Acc:HGNC:29181]
15. FAM72A ENSGALG00000000791 17723 0.905 - - - - - - - - - 0.905 family with sequence similarity 72 member A, transcript variant X1
16. SPATA20 ENSGALG00000006857 3506 0.903 - - - - - - - - - 0.903 spermatogenesis associated 20 [Source:HGNC Symbol;Acc:HGNC:26125]
17. TRAPPC12 ENSGALG00000016387 2593 0.902 - - - - - - - - - 0.902 trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
18. CUL5 ENSGALG00000017165 2480 0.901 - - - - - - - - - 0.901 cullin 5 [Source:HGNC Symbol;Acc:HGNC:2556]
19. UFD1L 12964 0.898 - - - - - - - - - 0.898 ubiquitin fusion degradation 1 like (yeast)
20. KIDINS220 ENSGALG00000016409 854 0.896 - - - - - - - - - 0.896 kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
21. ANKRD46 ENSGALG00000041445 3791 0.89 - - - - - - - - - 0.890 ankyrin repeat domain 46, transcript variant X1
22. MTDH ENSGALG00000034050 9525 0.887 - - - - - - - - - 0.887 metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
23. DDX54 ENSGALG00000007490 8729 0.886 - - - - - - - - - 0.886 DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
24. POLR2K ENSGALG00000036019 8962 0.882 - - - - - - - - - 0.882 RNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]
25. AIMP1 ENSGALG00000010553 17994 0.881 - - - - - - - - - 0.881 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:HGNC:10648]
26. SQLE ENSGALG00000036915 4172 0.877 - - - - - - - - - 0.877 squalene epoxidase [Source:NCBI gene;Acc:420335]
27. SUN1 ENSGALG00000003781 3442 0.875 - - - - - - - - - 0.875 Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
28. CCDC66 ENSGALG00000005450 1262 0.872 - - - - - - - - - 0.872 coiled-coil domain containing 66 [Source:HGNC Symbol;Acc:HGNC:27709]
29. MFSD1 ENSGALG00000009593 3116 0.865 - - - - - - - - - 0.865 major facilitator superfamily domain containing 1 [Source:NCBI gene;Acc:425017]
30. CD9 ENSGALG00000017274 960 0.864 - - - - - - - 0.864 - - CD9 molecule [Source:NCBI gene;Acc:395527]
31. HELLS ENSGALG00000005451 7094 0.863 - - - - - - - - - 0.863 helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
32. MYO5A ENSGALG00000031987 2469 0.859 - - - - - - - - - 0.859 myosin VA [Source:NCBI gene;Acc:396237]
33. LMO4 ENSGALG00000006252 3686 0.855 - - 0.855 - - - - - - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
34. GTSE1 ENSGALG00000004897 2865 0.855 - - - - - - - - - 0.855 G2 and S-phase expressed 1 [Source:NCBI gene;Acc:425204]
35. HNRNPD ENSGALG00000011184 10686 0.853 - - - - - - - - - 0.853 heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
36. CSRP2BP CSRP2BP 4679 0.85 - - - - - - - - - 0.850
37. FZD2 ENSGALG00000030847 3286 0.849 - - 0.849 - - - - - - - frizzled class receptor 2 [Source:NCBI gene;Acc:374061]
38. AS3MT ENSGALG00000008133 795 0.848 - - - - - - - 0.848 - - arsenite methyltransferase [Source:HGNC Symbol;Acc:HGNC:17452]
39. ISCA1 ENSGALG00000012606 10342 0.848 - - - - - - - - - 0.848 iron-sulfur cluster assembly 1 [Source:NCBI gene;Acc:427463]
40. INTS9 ENSGALG00000016631 742 0.846 - - 0.846 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
41. MAN1A1 ENSGALG00000014878 1061 0.844 - - 0.844 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
42. CDV3 ENSGALG00000032316 693 0.844 - - 0.844 - - - - - - - CDV3 homolog [Source:NCBI gene;Acc:420693]
43. VWA9 ENSGALG00000007491 4790 0.843 - - - - - - - - - 0.843 von Willebrand factor A domain containing 9 [Source:NCBI gene;Acc:415540]
44. PRTG ENSGALG00000037336 34665 0.842 - - - - - - - - - 0.842 protogenin [Source:NCBI gene;Acc:415407]
45. LGALS3 ENSGALG00000012173 3306 0.838 - - 0.838 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
46. POLN ENSGALG00000015692 1714 0.837 - - - - - - - - - 0.837 DNA polymerase nu [Source:HGNC Symbol;Acc:HGNC:18870]
47. MOB3A ENSGALG00000031729 9690 0.837 - - - - - - - - - 0.837 MOB kinase activator 3A [Source:HGNC Symbol;Acc:HGNC:29802]
48. PHIP ENSGALG00000015889 2348 0.837 - - 0.837 - - - - - - - pleckstrin homology domain interacting protein [Source:HGNC Symbol;Acc:HGNC:15673]
49. YLPM1 671 0.836 - - 0.836 - - - - - - - YLP motif containing 1
50. PCP4 ENSGALG00000022819 880 0.835 - - 0.835 - - - - - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
51. CASP1 ENSGALG00000001049 1067 0.835 - - 0.835 - - - - - - - caspase 1, transcript variant X2
52. TANC1 ENSGALG00000012570 4196 0.835 - - 0.835 - - - - - - - tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
53. NOA1 ENSGALG00000038585 2907 0.833 - - 0.833 - - - - - - - nitric oxide associated 1 [Source:HGNC Symbol;Acc:HGNC:28473]
54. FBXO34 ENSGALG00000032563 656 0.833 - - 0.833 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
55. PKP4 ENSGALG00000012561 3087 0.833 - - 0.833 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
56. TMEM97 ENSGALG00000005702 2037 0.83 - - 0.830 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
57. COMMD1 ENSGALG00000008931 12202 0.829 - - - - - - - - - 0.829 copper metabolism domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23024]
58. FURIN ENSGALG00000008341 2609 0.829 - - 0.829 - - - - - - - furin, paired basic amino acid cleaving enzyme [Source:NCBI gene;Acc:395457]
59. DZIP1 ENSGALG00000016895 681 0.829 - - 0.829 - - - - - - - DAZ interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:20908]
60. MCM2 ENSGALG00000006037 13458 0.828 - - - - - - - - - 0.828 minichromosome maintenance complex component 2 [Source:NCBI gene;Acc:416027]
61. C9orf89 C9orf89 3056 0.827 - - - - - - - - - 0.827
62. LMO7 ENSGALG00000016920 3809 0.826 - - - - - - - - - 0.826 LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646]
63. LRR1 ENSGALG00000012230 1062 0.826 - - 0.826 - - - - - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
64. PROS1 ENSGALG00000015409 3685 0.825 - - - - - - - 0.825 - - protein S [Source:HGNC Symbol;Acc:HGNC:9456]
65. SPTY2D1 ENSGALG00000006355 994 0.825 - - 0.825 - - - - - - - SPT2 chromatin protein domain containing 1 [Source:NCBI gene;Acc:423083]
66. SLU7 ENSGALG00000034414 5386 0.824 - - 0.824 - - - - - - - SLU7 homolog, splicing factor [Source:NCBI gene;Acc:416157]
67. ENSGALG00000028359 ENSGALG00000028359 479 0.824 - - 0.824 - - - - - - -
68. AGPAT9 AGPAT9 1823 0.824 - - 0.824 - - - - - - -
69. SLC4A4 ENSGALG00000031105 534 0.824 - - 0.824 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
70. CASP8AP2 ENSGALG00000015611 5657 0.823 - - - - - - - - - 0.823 caspase 8 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1510]
71. CSRP1 ENSGALG00000000318 3702 0.823 - - - - - - - 0.823 - - cysteine and glycine rich protein 1 [Source:NCBI gene;Acc:396176]
72. MPG ENSGALG00000028691 1874 0.821 - - 0.821 - - - - - - - N-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
73. RALY ENSGALG00000033696 1110 0.82 - - - - - - - 0.820 - - RALY heterogeneous nuclear ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15921]
74. Sep-07 Sep-07 2939 0.82 - - - - - - - - - 0.820
75. MGMT ENSGALG00000042949 53 0.82 - - 0.820 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
76. AP3M1 ENSGALG00000005070 712 0.82 - - 0.820 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
77. BRT-1 BRT-1 26083 0.819 - - - - - - - - - 0.819
78. RAB3B ENSGALG00000010567 894 0.819 - - 0.819 - - - - - - - RAB3B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9778]
79. ATP2B2 ENSGALG00000030908 584 0.819 - - 0.819 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
80. RHOC ENSGALG00000001569 53 0.818 - - 0.818 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
81. GOLGA2 ENSGALG00000004881 677 0.818 - - 0.818 - - - - - - - golgin A2, transcript variant X7
82. F2RL2 ENSGALG00000023379 1049 0.818 - - - - - - - - - 0.818 coagulation factor II thrombin receptor like 2 [Source:HGNC Symbol;Acc:HGNC:3539]
83. USP8 ENSGALG00000005894 4499 0.818 - - - - - - - - - 0.818 ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:HGNC:12631]
84. ACOT9 ENSGALG00000016351 330 0.818 - - 0.818 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
85. MT1 MT1 218 0.817 - - 0.817 - - - - - - -
86. ADAMTS2 ENSGALG00000032974 141 0.817 - - 0.817 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
87. LYPD6B ENSGALG00000028759 831 0.817 - - 0.817 - - - - - - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
88. IP6K1 ENSGALG00000002510 827 0.817 - - 0.817 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
89. POMC ENSGALG00000016600 99 0.817 - - 0.817 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
90. PRKCDBP PRKCDBP 2249 0.817 - - - - - - - 0.817 - -
91. KIAA0195 KIAA0195 48 0.816 - - 0.816 - - - - - - -
92. PLEKHG5 ENSGALG00000027476 42 0.816 - - 0.816 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
93. GRIK3 ENSGALG00000002098 111 0.816 - - 0.816 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
94. ENSGALG00000023180 ENSGALG00000023180 83 0.815 - - 0.815 - - - - - - -
95. RASSF8 ENSGALG00000014041 850 0.815 - - 0.815 - - - - - - - Ras association domain family member 8 [Source:HGNC Symbol;Acc:HGNC:13232]
96. KLHL15 ENSGALG00000016345 1638 0.814 - - 0.814 - - - - - - - kelch like family member 15 [Source:NCBI gene;Acc:418598]
97. ZNF503 ENSGALG00000041935 2895 0.814 - - 0.814 - - - - - - - zinc finger protein 503 [Source:HGNC Symbol;Acc:HGNC:23589]
98. LOC770492 ENSGALG00000027778 695 0.814 - - - - - - - - - 0.814 ras-related and estrogen-regulated growth inhibitor-like
99. OSGEPL1 ENSGALG00000037727 1879 0.814 - - 0.814 - - - - - - - O-sialoglycoprotein endopeptidase like 1 [Source:HGNC Symbol;Acc:HGNC:23075]
100. DLX5 ENSGALG00000009129 1395 0.813 - - 0.813 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]

There are 321 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA