Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Trim28

Gene Name Gene ID Reads Annotation
Trim28 ENSMUSG00000005566 48788 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]







Genes with expression patterns similar to Trim28

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Trim28 ENSMUSG00000005566 48788 6 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
2. Tecr ENSMUSG00000031708 37176 1.587 - 0.868 0.719 - - - trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
3. Arhgdia ENSMUSG00000025132 6935 1.52 - - 0.758 - - 0.762 Rho GDP dissociation inhibitor (GDI) alpha [Source:MGI Symbol;Acc:MGI:2178103]
4. Gatad2a ENSMUSG00000036180 9639 1.431 - - 0.714 - - 0.717 GATA zinc finger domain containing 2A [Source:MGI Symbol;Acc:MGI:2384585]
5. Got2 ENSMUSG00000031672 8823 0.989 0.989 - - - - - glutamatic-oxaloacetic transaminase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:95792]
6. Brix1 ENSMUSG00000022247 7947 0.989 0.989 - - - - - BRX1, biogenesis of ribosomes [Source:MGI Symbol;Acc:MGI:1915082]
7. Usp9x ENSMUSG00000031010 7650 0.989 0.989 - - - - - ubiquitin specific peptidase 9, X chromosome [Source:MGI Symbol;Acc:MGI:894681]
8. Haus6 ENSMUSG00000038047 6664 0.989 0.989 - - - - - HAUS augmin-like complex, subunit 6 [Source:MGI Symbol;Acc:MGI:1923389]
9. 0610007P14Rik 5393 0.989 0.989 - - - - - RIKEN cDNA 0610007P14 gene, transcript variant X1
10. Bet1l ENSMUSG00000025484 4660 0.988 0.988 - - - - - Bet1 golgi vesicular membrane trafficking protein like [Source:MGI Symbol;Acc:MGI:1913128]
11. Tox3 ENSMUSG00000043668 4413 0.988 0.988 - - - - - TOX high mobility group box family member 3 [Source:MGI Symbol;Acc:MGI:3039593]
12. Ubqln1 ENSMUSG00000005312 6279 0.988 0.988 - - - - - ubiquilin 1 [Source:MGI Symbol;Acc:MGI:1860276]
13. Melk ENSMUSG00000035683 10279 0.988 0.988 - - - - - maternal embryonic leucine zipper kinase [Source:MGI Symbol;Acc:MGI:106924]
14. Cdh5 ENSMUSG00000031871 3693 0.988 0.988 - - - - - cadherin 5 [Source:MGI Symbol;Acc:MGI:105057]
15. Thap11 ENSMUSG00000036442 4347 0.988 0.988 - - - - - THAP domain containing 11 [Source:MGI Symbol;Acc:MGI:1930964]
16. Il15ra ENSMUSG00000023206 2839 0.988 0.988 - - - - - interleukin 15 receptor, alpha chain [Source:MGI Symbol;Acc:MGI:104644]
17. Lamtor1 ENSMUSG00000030842 13061 0.988 0.988 - - - - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:MGI Symbol;Acc:MGI:1913758]
18. Ahi1 ENSMUSG00000019986 4663 0.987 0.987 - - - - - Abelson helper integration site 1 [Source:MGI Symbol;Acc:MGI:87971]
19. Igsf8 ENSMUSG00000038034 9546 0.986 0.986 - - - - - immunoglobulin superfamily, member 8 [Source:MGI Symbol;Acc:MGI:2154090]
20. Casp6 ENSMUSG00000027997 6644 0.986 0.986 - - - - - caspase 6 [Source:MGI Symbol;Acc:MGI:1312921]
21. Manea ENSMUSG00000040520 4850 0.985 0.985 - - - - - mannosidase, endo-alpha [Source:MGI Symbol;Acc:MGI:2444484]
22. Rbm25 ENSMUSG00000010608 21393 0.984 0.984 - - - - - RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
23. Setdb1 ENSMUSG00000015697 6067 0.983 0.983 - - - - - SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
24. Wiz ENSMUSG00000024050 6006 0.983 0.983 - - - - - widely-interspaced zinc finger motifs [Source:MGI Symbol;Acc:MGI:1332638]
25. Pum1 ENSMUSG00000028580, ENSMUSG00000106966 17559 0.978 0.978 - - - - - pumilio RNA-binding family member 1 [Source:MGI Symbol;Acc:MGI:1931749]
26. Cul3 ENSMUSG00000004364 7601 0.967 0.967 - - - - - cullin 3 [Source:MGI Symbol;Acc:MGI:1347360]
27. Chchd2 ENSMUSG00000070493 83335 0.964 0.964 - - - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
28. Rps4x ENSMUSG00000031320 60937 0.949 - 0.949 - - - - ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
29. Snap47 ENSMUSG00000009894 8699 0.924 - 0.924 - - - - synaptosomal-associated protein, 47 [Source:MGI Symbol;Acc:MGI:1915076]
30. Srsf3 ENSMUSG00000071172 39244 0.914 0.914 - - - - - serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
31. Tnpo1 ENSMUSG00000009470 10504 0.911 - 0.911 - - - - transportin 1 [Source:MGI Symbol;Acc:MGI:2681523]
32. Rpl23 ENSMUSG00000071415 83209 0.907 - 0.907 - - - - ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Gm8738 ENSMUSG00000092540 9001 0.907 - 0.907 - - - - predicted gene 8738 [Source:MGI Symbol;Acc:MGI:3644778]
34. Metap1 ENSMUSG00000005813 5209 0.897 - 0.897 - - - - methionyl aminopeptidase 1 [Source:MGI Symbol;Acc:MGI:1922874]
35. Rfc4 ENSMUSG00000022881 1797 0.897 - 0.897 - - - - replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571]
36. Jpx ENSMUSG00000097571 1606 0.897 - 0.897 - - - - Jpx transcript, Xist activator (non-protein coding) [Source:MGI Symbol;Acc:MGI:2180008]
37. Oxsr1 ENSMUSG00000036737 2902 0.897 - 0.897 - - - - oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
38. B9d2 ENSMUSG00000063439 1774 0.897 - 0.897 - - - - B9 protein domain 2 [Source:MGI Symbol;Acc:MGI:2387643]
39. Mtfr1l ENSMUSG00000046671 3218 0.897 - 0.897 - - - - mitochondrial fission regulator 1-like [Source:MGI Symbol;Acc:MGI:1924074]
40. Fhl2 ENSMUSG00000008136 2073 0.897 - 0.897 - - - - four and a half LIM domains 2 [Source:MGI Symbol;Acc:MGI:1338762]
41. RP24-570C10.6 RP24-570C10.6 1922 0.897 - 0.897 - - - -
42. Pax6 ENSMUSG00000027168 2751 0.896 - 0.896 - - - - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
43. Ssbp2 ENSMUSG00000003992 5516 0.896 - 0.896 - - - - single-stranded DNA binding protein 2 [Source:MGI Symbol;Acc:MGI:1914220]
44. Mbd4 ENSMUSG00000030322 3686 0.896 - 0.896 - - - - methyl-CpG binding domain protein 4 [Source:MGI Symbol;Acc:MGI:1333850]
45. Ddx54 ENSMUSG00000029599 3371 0.895 - 0.895 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Source:MGI Symbol;Acc:MGI:1919240]
46. Poc1b ENSMUSG00000019952 3527 0.895 - 0.895 - - - - POC1 centriolar protein B [Source:MGI Symbol;Acc:MGI:1918511]
47. Nus1 ENSMUSG00000023068 4291 0.895 - 0.895 - - - - NUS1 dehydrodolichyl diphosphate synthase subunit [Source:MGI Symbol;Acc:MGI:1196365]
48. Sf3b2 ENSMUSG00000024853 10455 0.894 - 0.894 - - - - splicing factor 3b, subunit 2 [Source:MGI Symbol;Acc:MGI:2441856]
49. Nufip2 ENSMUSG00000037857 4757 0.894 - 0.894 - - - - nuclear fragile X mental retardation protein interacting protein 2 [Source:MGI Symbol;Acc:MGI:1915814]
50. Kif22 ENSMUSG00000030677 4914 0.893 - 0.893 - - - - kinesin family member 22 [Source:MGI Symbol;Acc:MGI:109233]
51. Qk ENSMUSG00000062078 10985 0.893 - 0.893 - - - - quaking [Source:MGI Symbol;Acc:MGI:97837]
52. Meis2 ENSMUSG00000027210 12084 0.892 - 0.892 - - - - Meis homeobox 2 [Source:MGI Symbol;Acc:MGI:108564]
53. Zyg11b ENSMUSG00000034636 4618 0.892 - 0.892 - - - - zyg-ll family member B, cell cycle regulator [Source:MGI Symbol;Acc:MGI:2685277]
54. Klhdc10 ENSMUSG00000029775 6240 0.892 - 0.892 - - - - kelch domain containing 10 [Source:MGI Symbol;Acc:MGI:1924038]
55. Ptdss1 ENSMUSG00000021518 4429 0.89 - 0.890 - - - - phosphatidylserine synthase 1 [Source:MGI Symbol;Acc:MGI:1276575]
56. Smarcc2 ENSMUSG00000025369 11776 0.888 - 0.888 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 [Source:MGI Symbol;Acc:MGI:1915344]
57. Bre 3054 0.887 - 0.887 - - - - brain and reproductive organ-expressed protein, transcript variant X1
58. Igf2r ENSMUSG00000023830 12577 0.886 - 0.886 - - - - insulin-like growth factor 2 receptor [Source:MGI Symbol;Acc:MGI:96435]
59. Kif5b ENSMUSG00000006740 15165 0.886 - 0.886 - - - - kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
60. Psma2 ENSMUSG00000015671 11365 0.884 - 0.884 - - - - proteasome (prosome, macropain) subunit, alpha type 2 [Source:MGI Symbol;Acc:MGI:104885]
61. Sec31a ENSMUSG00000035325 20178 0.882 - 0.882 - - - - Sec31 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1916412]
62. Hax1 ENSMUSG00000027944 7599 0.87 - 0.870 - - - - HCLS1 associated X-1 [Source:MGI Symbol;Acc:MGI:1346319]
63. Hmgn1 ENSMUSG00000040681 55060 0.859 - 0.859 - - - - high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Lman1 ENSMUSG00000041891 6635 0.854 - 0.854 - - - - lectin, mannose-binding, 1 [Source:MGI Symbol;Acc:MGI:1917611]
65. Map1b ENSMUSG00000052727 28977 0.848 - 0.848 - - - - microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
66. Dcakd ENSMUSG00000020935 17906 0.815 - - 0.815 - - - dephospho-CoA kinase domain containing [Source:MGI Symbol;Acc:MGI:1915337]
67. Rps5 ENSMUSG00000012848 49542 0.809 - 0.809 - - - - ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. U2af2 ENSMUSG00000030435 49812 0.8 - - 0.800 - - - U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
69. Hba-x ENSMUSG00000055609 87325 0.793 - 0.793 - - - - hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
70. Psme3 ENSMUSG00000078652 16638 0.791 - - 0.791 - - - proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) [Source:MGI Symbol;Acc:MGI:1096366]
71. Strn4 ENSMUSG00000030374 8946 0.79 - - 0.790 - - - striatin, calmodulin binding protein 4 [Source:MGI Symbol;Acc:MGI:2142346]
72. Spin1 ENSMUSG00000021395 7050 0.78 - - - - - 0.780 spindlin 1 [Source:MGI Symbol;Acc:MGI:109242]
73. Erdr1 17201 0.778 - - 0.778 - - - erythroid differentiation regulator 1, transcript variant 1, non-coding
74. Dpp3 ENSMUSG00000063904 4642 0.776 - - - - - 0.776 dipeptidylpeptidase 3 [Source:MGI Symbol;Acc:MGI:1922471]
75. Txn2 ENSMUSG00000005354 7983 0.768 - - 0.768 - - - thioredoxin 2 [Source:MGI Symbol;Acc:MGI:1929468]
76. Dazap1 ENSMUSG00000069565 8286 0.768 - - 0.768 - - - DAZ associated protein 1 [Source:MGI Symbol;Acc:MGI:1917498]
77. Fus ENSMUSG00000030795 9365 0.766 - - 0.766 - - - fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633]
78. Anp32b ENSMUSG00000028333 39524 0.763 - - 0.763 - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Tubb5 ENSMUSG00000001525 119280 0.762 - - 0.762 - - - tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
80. Zfp318 ENSMUSG00000015597 1779 0.761 - - - - - 0.761 zinc finger protein 318 [Source:MGI Symbol;Acc:MGI:1889348]
81. Rab11b ENSMUSG00000077450 12058 0.757 - - 0.757 - - - RAB11B, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:99425]
82. Tcof1 ENSMUSG00000024613 11118 0.757 - - 0.757 - - - treacle ribosome biogenesis factor 1 [Source:MGI Symbol;Acc:MGI:892003]
83. Cxxc1 ENSMUSG00000024560 6841 0.756 - - 0.756 - - - CXXC finger 1 (PHD domain) [Source:MGI Symbol;Acc:MGI:1921572]
84. Parva ENSMUSG00000030770 5969 0.753 - - - - - 0.753 parvin, alpha [Source:MGI Symbol;Acc:MGI:1931144]
85. Spen ENSMUSG00000040761 5737 0.752 - - 0.752 - - - spen family transcription repressor [Source:MGI Symbol;Acc:MGI:1891706]
86. Pcnxl3 Pcnxl3 1231 0.75 - - - - - 0.750
87. Smarcb1 ENSMUSG00000000902 4174 0.75 - - 0.750 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:MGI Symbol;Acc:MGI:1328366]
88. Dctn1 ENSMUSG00000031865 11800 0.749 - - 0.749 - - - dynactin 1 [Source:MGI Symbol;Acc:MGI:107745]
89. Bbs2 ENSMUSG00000031755 976 0.744 - - - - - 0.744 Bardet-Biedl syndrome 2 (human) [Source:MGI Symbol;Acc:MGI:2135267]
90. 6330403K07Rik ENSMUSG00000018451 4256 0.743 - - - - - 0.743 RIKEN cDNA 6330403K07 gene [Source:MGI Symbol;Acc:MGI:1918001]
91. Cox5b ENSMUSG00000061518 4142 0.743 - - - - - 0.743 cytochrome c oxidase subunit 5B [Source:MGI Symbol;Acc:MGI:88475]
92. Map2k6 ENSMUSG00000020623 623 0.743 - - - - - 0.743 mitogen-activated protein kinase kinase 6 [Source:MGI Symbol;Acc:MGI:1346870]
93. Nap1l1 ENSMUSG00000058799 17458 0.742 - - - - - 0.742 nucleosome assembly protein 1-like 1 [Source:MGI Symbol;Acc:MGI:1855693]
94. Lgr4 ENSMUSG00000050199 2330 0.741 - - - - - 0.741 leucine-rich repeat-containing G protein-coupled receptor 4 [Source:MGI Symbol;Acc:MGI:1891468]
95. Klhdc3 ENSMUSG00000063576 3875 0.741 - - - - - 0.741 kelch domain containing 3 [Source:MGI Symbol;Acc:MGI:2651568]
96. Tmem234 ENSMUSG00000028797 6517 0.74 - - - - - 0.740 transmembrane protein 234 [Source:MGI Symbol;Acc:MGI:1924049]
97. Narg2 Narg2 1692 0.74 - - - - - 0.740
98. Ywhae ENSMUSG00000020849 38415 0.74 - - 0.740 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. Tsnax ENSMUSG00000056820 4417 0.739 - - - - - 0.739 translin-associated factor X [Source:MGI Symbol;Acc:MGI:1855672]
100. Timm17b ENSMUSG00000031158 3710 0.739 - - - - - 0.739 translocase of inner mitochondrial membrane 17b [Source:MGI Symbol;Acc:MGI:1343176]

There are 125 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA