Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TUBE1

Gene Name Gene ID Reads Annotation
TUBE1 ENSGALG00000015017 39 tubulin epsilon 1, transcript variant X1











Genes with expression patterns similar to TUBE1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TUBE1 ENSGALG00000015017 39 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 tubulin epsilon 1, transcript variant X1
2. LPP ENSGALG00000007337 18 1.649 - - 0.744 - - 0.905 - - - - LIM domain containing preferred translocation partner in lipoma [Source:NCBI gene;Acc:429148]
3. RPS6KA3 ENSGALG00000016406 24 0.949 - - - - - 0.949 - - - - ribosomal protein S6 kinase A3 [Source:HGNC Symbol;Acc:HGNC:10432]
4. CHADL ENSGALG00000011970 42 0.906 - - - 0.906 - - - - - - chondroadherin-like [Source:NCBI gene;Acc:417998]
5. F-KER ENSGALG00000028706 0 0.905 - - - - - 0.905 - - - - feather keratin I [Source:NCBI gene;Acc:769269]
6. ARHGEF17 6 0.905 - - - - - 0.905 - - - - Rho guanine nucleotide exchange factor 17
7. PPP1R12B ENSGALG00000000336 16 0.905 - - - - - 0.905 - - - - protein phosphatase 1 regulatory subunit 12B [Source:NCBI gene;Acc:395478]
8. PPP1R1B ENSGALG00000044406 6 0.905 - - - - - 0.905 - - - - protein phosphatase 1 regulatory inhibitor subunit 1B [Source:HGNC Symbol;Acc:HGNC:9287]
9. VSTM2A ENSGALG00000041764 2 0.905 - - - - - 0.905 - - - - V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
10. PLD5 ENSGALG00000010737 5 0.905 - - - - - 0.905 - - - - phospholipase D family member 5 [Source:NCBI gene;Acc:421501]
11. ZNRF2 ENSGALG00000031163 0 0.905 - - - - - 0.905 - - - - zinc and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:22316]
12. STX3 ENSGALG00000035153 1 0.905 - - - - - 0.905 - - - - syntaxin 3
13. ENSGALG00000021682 ENSGALG00000021682 0 0.905 - - - - - 0.905 - - - -
14. PSTPIP1 ENSGALG00000002786 9 0.905 - - - - - 0.905 - - - - proline-serine-threonine phosphatase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9580]
15. CARF ENSGALG00000008474 6 0.905 - - - - - 0.905 - - - - calcium responsive transcription factor [Source:HGNC Symbol;Acc:HGNC:14435]
16. SP-A SP-A 9 0.905 - - - - - 0.905 - - - -
17. C1H7ORF60 C1H7ORF60 3 0.905 - - - - - 0.905 - - - -
18. FAM160A2 ENSGALG00000003416 23 0.905 - - - - - 0.905 - - - - family with sequence similarity 160 member A2 [Source:HGNC Symbol;Acc:HGNC:25378]
19. PITPNC1L ENSGALG00000002610 3 0.905 - - - - - 0.905 - - - - phosphatidylinositol transfer protein, cytoplasmic 1-like, transcript variant X2
20. MFSD6 ENSGALG00000041884 1 0.905 - - - - - 0.905 - - - - major facilitator superfamily domain containing 6 [Source:HGNC Symbol;Acc:HGNC:24711]
21. ENSGALG00000013079 ENSGALG00000013079 12 0.905 - - - - - 0.905 - - - -
22. PRKG2 ENSGALG00000010909 1 0.905 - - - - - 0.905 - - - - protein kinase cGMP-dependent 2 [Source:HGNC Symbol;Acc:HGNC:9416]
23. SEC16A ENSGALG00000002364 19 0.905 - - - - - 0.905 - - - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X1
24. RHBDF2 ENSGALG00000001943 1 0.905 - - - - - 0.905 - - - - rhomboid 5 homolog 2 [Source:HGNC Symbol;Acc:HGNC:20788]
25. TMEM163 ENSGALG00000012190 72 0.905 - - - - - 0.905 - - - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
26. PTPN3 ENSGALG00000022909 6 0.905 - - - - - 0.905 - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
27. GBE ENSGALG00000011859, ENSGALG00000028016 2 0.905 - - - - - 0.905 - - - - eye-globin, transcript variant X3
28. AFTPH ENSGALG00000008828 21 0.905 - - - - - 0.905 - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
29. SNX8 ENSGALG00000004255 4 0.905 - - - - - 0.905 - - - - sorting nexin 8 [Source:HGNC Symbol;Acc:HGNC:14972]
30. TBX15 0 0.905 - - - - - 0.905 - - - - T-box 15
31. SLC26A6 ENSGALG00000026089 3 0.905 - - - - - 0.905 - - - - solute carrier family 26 member 6 [Source:NCBI gene;Acc:416012]
32. MFSD11 ENSGALG00000001777 8 0.905 - - - - - 0.905 - - - - major facilitator superfamily domain containing 11 [Source:HGNC Symbol;Acc:HGNC:25458]
33. ERI3 ENSGALG00000010106 995 0.905 - - - - - 0.905 - - - - ERI1 exoribonuclease family member 3 [Source:HGNC Symbol;Acc:HGNC:17276]
34. AATK ENSGALG00000006901 1 0.905 - - - - - 0.905 - - - - apoptosis associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:21]
35. TRIM25 ENSGALG00000003144 12 0.905 - - - - - 0.905 - - - - Gallus gallus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001318458]
36. C17orf105 C17orf105 11 0.905 - - - - - 0.905 - - - -
37. GAMT ENSGALG00000040182 5 0.905 - - - - - 0.905 - - - - guanidinoacetate N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4136]
38. SOD3 ENSGALG00000018557 16 0.905 - - - - - 0.905 - - - - superoxide dismutase 3 [Source:HGNC Symbol;Acc:HGNC:11181]
39. FKHR FKHR 1 0.905 - - - - - 0.905 - - - -
40. gga-mir-10a ENSGALG00000021952 4 0.905 - - - - - 0.905 - - - - gga-mir-10a [Source:miRBase;Acc:MI0007559]
41. PABPN1L ENSGALG00000006242 3 0.905 - - - - - 0.905 - - - - poly(A) binding protein nuclear 1 like, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:37237]
42. WFDC2 ENSGALG00000031164 37 0.905 - - - - - 0.905 - - - - WAP four-disulfide core domain 2 [Source:HGNC Symbol;Acc:HGNC:15939]
43. RNF217 ENSGALG00000013651 1 0.905 - - - - - 0.905 - - - - ring finger protein 217 [Source:HGNC Symbol;Acc:HGNC:21487]
44. WDR41 ENSGALG00000004350 16 0.905 - - - - - 0.905 - - - - WD repeat domain 41 [Source:HGNC Symbol;Acc:HGNC:25601]
45. TMEM189 ENSGALG00000026906 14 0.905 - - - - - 0.905 - - - - transmembrane protein 189 [Source:NCBI gene;Acc:100538348]
46. KATNAL2 ENSGALG00000041882 1 0.905 - - - - - 0.905 - - - - katanin catalytic subunit A1 like 2 [Source:HGNC Symbol;Acc:HGNC:25387]
47. PPM1F ENSGALG00000039121 26 0.905 - - - - - 0.905 - - - - protein phosphatase, Mg2+/Mn2+ dependent 1F [Source:HGNC Symbol;Acc:HGNC:19388]
48. NME4 ENSGALG00000002688 1 0.905 - - - - - 0.905 - - - - NME/NM23 nucleoside diphosphate kinase 4 [Source:NCBI gene;Acc:395915]
49. LDB1 ENSGALG00000007641 2 0.905 - - - - - 0.905 - - - - LIM domain binding 1 [Source:NCBI gene;Acc:395952]
50. AK4 ENSGALG00000011035 9 0.905 - - - - - 0.905 - - - - adenylate kinase 4 [Source:HGNC Symbol;Acc:HGNC:363]
51. STRA8 ENSGALG00000011722 4 0.905 - - - - - 0.905 - - - - stimulated by retinoic acid 8 [Source:HGNC Symbol;Acc:HGNC:30653]
52. MNOC MNOC 1 0.905 - - - - - 0.905 - - - -
53. DNMBP ENSGALG00000007304 4 0.905 - - - - - 0.905 - - - - dynamin binding protein
54. VPS37D 3 0.905 - - - - - 0.905 - - - - VPS37D, ESCRT-I subunit
55. MINPP1 ENSGALG00000003695 1 0.905 - - - - - 0.905 - - - - multiple inositol-polyphosphate phosphatase 1 [Source:NCBI gene;Acc:395356]
56. CBL ENSGALG00000029077 6 0.905 - - - - - 0.905 - - - - Cbl proto-oncogene [Source:NCBI gene;Acc:374038]
57. GTF3C3 ENSGALG00000007958 6 0.905 - - - - - 0.905 - - - - general transcription factor IIIC subunit 3 [Source:NCBI gene;Acc:424052]
58. CORO6 ENSGALG00000028949 21 0.905 - - - - - 0.905 - - - - coronin 6 [Source:HGNC Symbol;Acc:HGNC:21356]
59. MAGI1 ENSGALG00000007431 23 0.905 - - - - - 0.905 - - - - membrane associated guanylate kinase, WW and PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:946]
60. RPS6KA2 ENSGALG00000011473 2 0.905 - - - - - 0.905 - - - - ribosomal protein S6 kinase A2 [Source:HGNC Symbol;Acc:HGNC:10431]
61. BAFF BAFF 40 0.905 - - - - - 0.905 - - - -
62. HID1 ENSGALG00000007808 2 0.905 - - - - - 0.905 - - - - HID1 domain containing [Source:HGNC Symbol;Acc:HGNC:15736]
63. FARP2 ENSGALG00000005788 6 0.905 - - - - - 0.905 - - - - FERM, ARH/RhoGEF and pleckstrin domain protein 2 [Source:HGNC Symbol;Acc:HGNC:16460]
64. ENSGALG00000028116 ENSGALG00000028116 0 0.905 - - - - - 0.905 - - - -
65. SNORA24 SNORA24 2 0.905 - - - - - 0.905 - - - -
66. AGRP ENSGALG00000002244 27 0.905 - - - - - 0.905 - - - - agouti related neuropeptide [Source:NCBI gene;Acc:427535]
67. DSCAML1 ENSGALG00000007314 1 0.905 - - - - - 0.905 - - - - DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
68. ENSGALG00000013409 ENSGALG00000013409 4 0.905 - - - - - 0.905 - - - -
69. gga-mir-301a ENSGALG00000029989 5 0.905 - - - - - 0.905 - - - - gga-mir-301a [Source:miRBase;Acc:MI0001240]
70. OVST_1 ENSGALG00000011930 9 0.905 - - - - - 0.905 - - - - ovostatin [Source:NCBI gene;Acc:396151]
71. ENPP4 ENSGALG00000016708 18 0.905 - - - - - 0.905 - - - - ectonucleotide pyrophosphatase/phosphodiesterase 4 [Source:NCBI gene;Acc:422055]
72. MAVS ENSGALG00000040428 1 0.905 - - - - - 0.905 - - - - mitochondrial antiviral signaling protein [Source:NCBI gene;Acc:422936]
73. PARP3 ENSGALG00000004517 331 0.881 - - - - - 0.881 - - - - poly(ADP-ribose) polymerase family member 3 [Source:HGNC Symbol;Acc:HGNC:273]
74. MAP3K14 ENSGALG00000000685 57 0.875 - - - - - 0.875 - - - - mitogen-activated protein kinase kinase kinase 14 [Source:NCBI gene;Acc:419964]
75. SST ENSGALG00000007361 1383 0.864 - - - - - 0.864 - - - - somatostatin [Source:NCBI gene;Acc:396279]
76. DSTYK ENSGALG00000041123 12 0.858 - - 0.858 - - - - - - - dual serine/threonine and tyrosine protein kinase [Source:NCBI gene;Acc:395171]
77. GPR143 ENSGALG00000016615 14 0.858 - - 0.858 - - - - - - - G protein-coupled receptor 143 [Source:NCBI gene;Acc:418652]
78. FYCO1 ENSGALG00000040212 75 0.854 - - - - - 0.854 - - - - FYVE and coiled-coil domain containing 1 [Source:NCBI gene;Acc:428453]
79. ETNK1 ENSGALG00000013205 18 0.854 - - 0.854 - - - - - - - ethanolamine kinase 1 [Source:HGNC Symbol;Acc:HGNC:24649]
80. TRAF3 ENSGALG00000011389 7 0.854 - - 0.854 - - - - - - - TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
81. NCF2 ENSGALG00000004700 9 0.846 - - 0.846 - - - - - - - neutrophil cytosolic factor 2 [Source:HGNC Symbol;Acc:HGNC:7661]
82. TDH ENSGALG00000016651 3 0.846 - - 0.846 - - - - - - - L-threonine dehydrogenase (pseudogene)
83. ENSGALG00000012435 ENSGALG00000012435 3 0.846 - - 0.846 - - - - - - -
84. ANO10 ENSGALG00000042371 2 0.846 - - 0.846 - - - - - - - anoctamin 10 [Source:HGNC Symbol;Acc:HGNC:25519]
85. GFI1 ENSGALG00000043650 2 0.846 - - 0.846 - - - - - - - growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]
86. CTDSP1 ENSGALG00000027768 2 0.846 - - 0.846 - - - - - - - CTD small phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:21614]
87. HBEGF ENSGALG00000000949 15 0.846 - - 0.846 - - - - - - - heparin binding EGF like growth factor [Source:NCBI gene;Acc:395654]
88. SHOX2 ENSGALG00000039728 2 0.846 - - 0.846 - - - - - - - short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]
89. SCUBE3 ENSGALG00000002675 12 0.846 - - 0.846 - - - - - - - signal peptide, CUB domain and EGF like domain containing 3 [Source:HGNC Symbol;Acc:HGNC:13655]
90. SNORD47 SNORD47 61 0.846 - - 0.846 - - - - - - -
91. ENSGALG00000007032 ENSGALG00000007032 1 0.846 - - 0.846 - - - - - - -
92. CDC42EP3 ENSGALG00000010551 15 0.846 - - 0.846 - - - - - - - CDC42 effector protein 3 [Source:HGNC Symbol;Acc:HGNC:16943]
93. RCAN2 ENSGALG00000016709 8 0.846 - - 0.846 - - - - - - - regulator of calcineurin 2 [Source:HGNC Symbol;Acc:HGNC:3041]
94. CHIA ENSGALG00000023760 1 0.846 - - 0.846 - - - - - - - chitinase, acidic [Source:NCBI gene;Acc:395072]
95. RUFY4 2 0.846 - - 0.846 - - - - - - - RUN and FYVE domain containing 4, transcript variant X5
96. STAM2 ENSGALG00000012513 9 0.843 - - 0.843 - - - - - - - signal transducing adaptor molecule 2 [Source:NCBI gene;Acc:424317]
97. FAM161A ENSGALG00000008810 36 0.84 - - - - - - - 0.840 - - FAM161A, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:25808]
98. MAP2K3 ENSGALG00000041285 27 0.84 - - - - - 0.840 - - - - mitogen-activated protein kinase kinase 3 [Source:NCBI gene;Acc:416496]
99. SPTY2D1 ENSGALG00000006355 994 0.838 - - - - - - - 0.838 - - SPT2 chromatin protein domain containing 1 [Source:NCBI gene;Acc:423083]
100. SLC15A5 ENSGALG00000013097 213 0.83 - - - - - 0.830 - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]

There are 84 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA