Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for TTR

Gene Name Gene ID Reads Annotation
TTR ENSGALG00000015143 9764 transthyretin [Source:NCBI gene;Acc:396277]











Genes with expression patterns similar to TTR

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TTR ENSGALG00000015143 9764 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 transthyretin [Source:NCBI gene;Acc:396277]
2. ANGPTL3 ENSGALG00000010978 335 1.809 - - - 0.977 - - - 0.832 - - angiopoietin like 3 [Source:NCBI gene;Acc:100189558]
3. DAP ENSGALG00000013002 6815 1.696 - - - - - - 0.992 0.704 - - death associated protein [Source:NCBI gene;Acc:420923]
4. GUCA2A ENSGALG00000027269 4340 1.671 - 0.762 - - - - - 0.909 - - guanylate cyclase activator 2A [Source:NCBI gene;Acc:419498]
5. ENPP6 ENSGALG00000010645 272 1.668 - - - 0.772 - - - 0.896 - - ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:HGNC Symbol;Acc:HGNC:23409]
6. TF ENSGALG00000006453 14007 1.599 - - - 0.826 0.773 - - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
7. LGALS2 ENSGALG00000003213 1089 1.527 - - - 0.800 - - - 0.727 - - galectin 2, transcript variant X2
8. MYLK ENSGALG00000011708 10434 0.995 - - - - - - 0.995 - - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
9. MEIS1 ENSGALG00000041626 3865 0.993 - - - - - - 0.993 - - - Meis homeobox 1 [Source:NCBI gene;Acc:395589]
10. PLEKHH2 ENSGALG00000009947 6384 0.992 - - - - - - 0.992 - - - pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
11. AIFM1 ENSGALG00000004003 10451 0.992 - - - - - - 0.992 - - - apoptosis inducing factor mitochondria associated 1 [Source:NCBI gene;Acc:428688]
12. ACADSB ENSGALG00000041417 7710 0.991 - - - - - - 0.991 - - - acyl-CoA dehydrogenase short/branched chain [Source:NCBI gene;Acc:423947]
13. ZFAND1 ENSGALG00000042794 2849 0.991 - - - - - - 0.991 - - - zinc finger AN1-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25858]
14. NUBP2 ENSGALG00000002316 3643 0.991 - - - - - - 0.991 - - - nucleotide binding protein 2 [Source:NCBI gene;Acc:416402]
15. STAM ENSGALG00000035287 7649 0.991 - - - - - - 0.991 - - - signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
16. RTF1 ENSGALG00000008595 31933 0.991 - - - - - - 0.991 - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
17. TYW3 ENSGALG00000032549 4869 0.991 - - - - - - 0.991 - - - tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
18. ATP2B4 ENSGALG00000003601 3746 0.99 - - - - - - 0.990 - - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
19. SEC11C ENSGALG00000031663 4266 0.99 - - - - - - 0.990 - - - SEC11 homolog C, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:23400]
20. CUX1_1 ENSGALG00000021636 3705 0.99 - - - - - - 0.990 - - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
21. CFC1 ENSGALG00000012623 3164 0.99 - - - - - - 0.990 - - - cripto, FRL-1, cryptic family 1 [Source:NCBI gene;Acc:395437]
22. N6AMT2 N6AMT2 4703 0.99 - - - - - - 0.990 - - -
23. PRKCI ENSGALG00000009364 11574 0.988 - - - - - - 0.988 - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
24. KDM2B ENSGALG00000004225 11513 0.988 - - - - - - 0.988 - - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
25. COPS5 ENSGALG00000030843 11942 0.987 - - - - - - 0.987 - - - COP9 signalosome subunit 5 [Source:NCBI gene;Acc:426579]
26. S100A11 ENSGALG00000036711 23454 0.986 - - - - - - 0.986 - - - S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
27. MPHOSPH6 ENSGALG00000031983 17073 0.983 - - - - - - 0.983 - - - M-phase phosphoprotein 6 [Source:NCBI gene;Acc:415811]
28. EIF3H ENSGALG00000040522 39919 0.982 - - - - - - 0.982 - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
29. KIAA1143 ENSGALG00000035952 6735 0.981 - - - - - - 0.981 - - - KIAA1143 [Source:NCBI gene;Acc:420709]
30. MYH10 ENSGALG00000001183 26889 0.98 - - - - - - 0.980 - - - myosin, heavy chain 10, non-muscle [Source:NCBI gene;Acc:396465]
31. GAL10 GAL10 33355 0.974 - - - 0.974 - - - - - -
32. YWHAH ENSGALG00000006743 29828 0.967 - - - - - - 0.967 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
33. CCNB2 ENSGALG00000004161 50324 0.963 - - - - - - 0.963 - - - cyclin B2 [Source:NCBI gene;Acc:415400]
34. RPL23A ENSGALG00000003966 369097 0.961 - - - - - - 0.961 - - - ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
35. HP1BP3 ENSGALG00000010079 33723 0.961 - - - - - - 0.961 - - - heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
36. DOK2 8 0.958 - - - - - - - - - 0.958 docking protein 2, transcript variant X2
37. SLC26A7 ENSGALG00000033638 14 0.958 - - - - - - - - - 0.958 solute carrier family 26 member 7 [Source:HGNC Symbol;Acc:HGNC:14467]
38. ACA64 ACA64 62 0.958 - - - - - - - - - 0.958
39. KK34 ENSGALG00000037851 21 0.958 - - - - - - - - - 0.958 interleukin-like [Source:NCBI gene;Acc:407087]
40. ZCCHC7 ENSGALG00000028675 3 0.958 - - - - - - - - - 0.958 zinc finger CCHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:26209]
41. FAM83G ENSGALG00000005087 3 0.958 - - - - - - - - - 0.958 family with sequence similarity 83 member G [Source:HGNC Symbol;Acc:HGNC:32554]
42. MDGA1 ENSGALG00000010145 13 0.958 - - - - - - - - - 0.958 MAM domain containing glycosylphosphatidylinositol anchor 1 [Source:NCBI gene;Acc:421431]
43. SH2D5 ENSGALG00000044997 2 0.958 - - - - - - - - - 0.958 SH2 domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28819]
44. NTSR1 ENSGALG00000005524 2 0.958 - - - - - - - - - 0.958 neurotensin receptor 1 [Source:NCBI gene;Acc:428149]
45. OXCT1 ENSGALG00000014846 17 0.952 - - - - - - - - - 0.952 3-oxoacid CoA-transferase 1 [Source:NCBI gene;Acc:427190]
46. EEF2 ENSGALG00000033884 62036 0.951 - - - - - - 0.951 - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
47. MCM8 ENSGALG00000009195 9 0.95 - - - - - - - - - 0.950 minichromosome maintenance 8 homologous recombination repair factor [Source:NCBI gene;Acc:421314]
48. ENSGALG00000019943 ENSGALG00000019943 6 0.947 - - - - - - - - - 0.947
49. RPL30 ENSGALG00000029897 58241 0.944 - - - - - - 0.944 - - - ribosomal protein L30 [Source:NCBI gene;Acc:425416]
50. MBD5 ENSGALG00000012449 27 0.938 - - - - - - - - - 0.938 methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
51. gga-mir-1647 ENSGALG00000025382 4 0.937 - - - - - - - - - 0.937 gga-mir-1647 [Source:miRBase;Acc:MI0007379]
52. SEMA5A ENSGALG00000028685 6 0.935 - - - - - - - - - 0.935 semaphorin 5A [Source:HGNC Symbol;Acc:HGNC:10736]
53. COL3A1 ENSGALG00000035584 39 0.935 - - - - - - - - - 0.935 collagen type III alpha 1 chain [Source:NCBI gene;Acc:396340]
54. CD101 12 0.935 - - - - - - - - - 0.935 CD101 molecule, transcript variant X4
55. SGCD ENSGALG00000003886 27 0.931 - - - - - - - - - 0.931 sarcoglycan delta [Source:HGNC Symbol;Acc:HGNC:10807]
56. NDUFA5 ENSGALG00000008821 22926 0.931 - - - - - - 0.931 - - - NADH:ubiquinone oxidoreductase subunit A5 [Source:NCBI gene;Acc:417753]
57. FGG ENSGALG00000009268 418 0.931 - - - 0.931 - - - - - - fibrinogen gamma chain [Source:NCBI gene;Acc:395837]
58. RECQL5 ENSGALG00000002424 16 0.93 - - - - - - - - - 0.930 RecQ like helicase 5 [Source:NCBI gene;Acc:373891]
59. PHB2 ENSGALG00000014567 104774 0.929 - - - - - - 0.929 - - - prohibitin 2 [Source:NCBI gene;Acc:771124]
60. SLC45A3 ENSGALG00000000703 85 0.929 - - - - - - - - - 0.929 solute carrier family 45 member 3 [Source:HGNC Symbol;Acc:HGNC:8642]
61. SERPINF2 ENSGALG00000002987 236 0.927 - - - 0.927 - - - - - - serpin family F member 2 [Source:HGNC Symbol;Acc:HGNC:9075]
62. SMOX ENSGALG00000015977 18 0.92 - - - - - - - - - 0.920 spermine oxidase [Source:HGNC Symbol;Acc:HGNC:15862]
63. CAT-1 CAT-1 115 0.92 - - - - - - - - - 0.920
64. SERPINC1 ENSGALG00000004591 68 0.918 - - - 0.918 - - - - - - Gallus gallus serpin family C member 1 (SERPINC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001353945]
65. PTPLA PTPLA 43 0.917 - - - - - - - - - 0.917
66. C10orf71 ENSGALG00000027353 19 0.917 - - - - - - - - - 0.917 chromosome 10 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:26973]
67. LCAT ENSGALG00000028928 484 0.913 - - - 0.913 - - - - - - lecithin-cholesterol acyltransferase [Source:NCBI gene;Acc:396136]
68. APOA1 ENSGALG00000007114 10215 0.912 - - - - - - - 0.912 - - apolipoprotein A1 [Source:NCBI gene;Acc:396536]
69. APOB ENSGALG00000016491 34 0.908 - - - 0.908 - - - - - - apolipoprotein B [Source:NCBI gene;Acc:396535]
70. CHCHD2 ENSGALG00000002495 99536 0.907 - - - - - - 0.907 - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
71. ARHGAP25 ENSGALG00000035194 74 0.907 - - - - - - - - - 0.907 Rho GTPase activating protein 25 [Source:NCBI gene;Acc:419516]
72. DOCK11 ENSGALG00000006017 20 0.904 - - - - - - - - - 0.904 dedicator of cytokinesis 11 [Source:HGNC Symbol;Acc:HGNC:23483]
73. SLC7A9 ENSGALG00000021158 1737 0.903 - - - - - - - 0.903 - - solute carrier family 7 member 9 [Source:NCBI gene;Acc:415768]
74. ST6GALNAC2L ENSGALG00000006900 85 0.901 - - - - - - - - - 0.901 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like, transcript variant X3
75. TSPAN13 ENSGALG00000027240 8999 0.898 - - - - 0.898 - - - - - tetraspanin 13 [Source:NCBI gene;Acc:420595]
76. KNG1 ENSGALG00000046159 17 0.898 - - - 0.898 - - - - - - kininogen 1 [Source:HGNC Symbol;Acc:HGNC:6383]
77. UBB ENSGALG00000004509 139598 0.897 - - - - - - 0.897 - - - Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. YPEL4 ENSGALG00000007374 23 0.895 - - - - - - - - - 0.895 yippee like 4 [Source:HGNC Symbol;Acc:HGNC:18328]
79. FGB ENSGALG00000009262 1169 0.895 - - - 0.895 - - - - - - fibrinogen beta chain [Source:NCBI gene;Acc:373926]
80. ZDHHC8 ENSGALG00000002124 35 0.894 - - - - - - - - - 0.894 zinc finger DHHC-type containing 8 [Source:NCBI gene;Acc:416788]
81. SERPINA10 ENSGALG00000020391 128 0.892 - - - 0.892 - - - - - - serpin family A member 10 [Source:HGNC Symbol;Acc:HGNC:15996]
82. CDH1 ENSGALG00000000608 6156 0.891 - - - 0.891 - - - - - - cadherin 3 [Source:NCBI gene;Acc:414845]
83. RGP1 ENSGALG00000002394 5937 0.89 - - - - - - 0.890 - - - RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
84. CD300A CD300A 173 0.889 - - - - - - - - - 0.889
85. GPR137C ENSGALG00000012401 3 0.883 - - - - - - - - - 0.883 G protein-coupled receptor 137C [Source:HGNC Symbol;Acc:HGNC:25445]
86. ACOT6 ENSGALG00000009292 38 0.883 - - - - - - - - - 0.883 acyl-CoA thioesterase 6 [Source:HGNC Symbol;Acc:HGNC:33159]
87. FGA ENSGALG00000009266 291 0.882 - - - 0.882 - - - - - - fibrinogen alpha chain [Source:NCBI gene;Acc:396307]
88. RBX1 ENSGALG00000011993 26090 0.882 - - - - - - 0.882 - - - ring-box 1 [Source:NCBI gene;Acc:418001]
89. HNRNPAB ENSGALG00000014381 41009 0.881 - - - - - - 0.881 - - - heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
90. S100A10 ENSGALG00000028774 8695 0.878 - - - - - - - 0.878 - - S100 calcium binding protein A10 [Source:NCBI gene;Acc:396506]
91. GSTA3 ENSGALG00000016325 1254 0.878 - - - 0.878 - - - - - - glutathione S-transferase alpha 3 [Source:NCBI gene;Acc:414896]
92. SIKE1 ENSGALG00000002147 20836 0.877 - - - 0.877 - - - - - - suppressor of IKBKE 1 [Source:NCBI gene;Acc:419887]
93. MAPK6 ENSGALG00000031448 28384 0.877 - - - - - - 0.877 - - - mitogen-activated protein kinase 6 [Source:NCBI gene;Acc:415419]
94. KIF26B ENSGALG00000010664 41 0.876 - - - - - - - - - 0.876 kinesin family member 26B [Source:HGNC Symbol;Acc:HGNC:25484]
95. CNP1 ENSGALG00000028638 56 0.874 - - - - - - - - - 0.874 C-type natriuretic peptide 1 [Source:NCBI gene;Acc:100499455]
96. LTK ENSGALG00000008615 33 0.871 - - - - - - - - - 0.871 leukocyte receptor tyrosine kinase
97. ENSGALG00000027621 ENSGALG00000027621 863 0.87 - - - 0.870 - - - - - -
98. F2 ENSGALG00000008332 298 0.869 - - - 0.869 - - - - - - coagulation factor II, thrombin [Source:NCBI gene;Acc:395306]
99. GNA14 ENSGALG00000015176 16 0.868 - - - - - - - - - 0.868 G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]
100. ODZ1 ODZ1 124 0.868 - - - - - - - - - 0.868

There are 167 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA