Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TRIM8

Gene Name Gene ID Reads Annotation
TRIM8 ENSGALG00000036785 5304 tripartite motif containing 8 [Source:NCBI gene;Acc:423864]











Genes with expression patterns similar to TRIM8

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TRIM8 ENSGALG00000036785 5304 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif containing 8 [Source:NCBI gene;Acc:423864]
2. KDM1A ENSGALG00000033469 20632 1.489 - - - - - - 0.748 0.741 - - lysine demethylase 1A [Source:HGNC Symbol;Acc:HGNC:29079]
3. WSB2 ENSGALG00000008151 13246 1.452 - - - - - - 0.717 0.735 - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
4. ALS2 ENSGALG00000008415 2576 0.828 - - - - - - 0.828 - - - ALS2, alsin Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:443]
5. GGMOXR1 GGMOXR1 6734 0.816 - - - - - - 0.816 - - -
6. HSPB8 ENSGALG00000007383 5333 0.811 - - - - - - 0.811 - - - heat shock protein family B (small) member 8 [Source:HGNC Symbol;Acc:HGNC:30171]
7. MICALL1 ENSGALG00000012265 3753 0.805 - - - - - - - 0.805 - - MICAL like 1 [Source:NCBI gene;Acc:418032]
8. CHID1 ENSGALG00000006830 964 0.797 - - - - - - - 0.797 - - chitinase domain containing 1 [Source:NCBI gene;Acc:423103]
9. BAHD1 ENSGALG00000033675 1779 0.795 - - - - - - - 0.795 - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
10. TMEM2 ENSGALG00000015138 4709 0.795 - - - - - - - 0.795 - - transmembrane protein 2, transcript variant X4
11. PIK3IP1 ENSGALG00000006942 8388 0.794 - - - - - - 0.794 - - - phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
12. IGBP1 ENSGALG00000044628 9200 0.791 - - - - - - 0.791 - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
13. TPM1 ENSGALG00000003521 11894 0.784 - - - - - - - 0.784 - - tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
14. ABCC9 ENSGALG00000013244 2153 0.78 - - - - - - - 0.780 - - ATP binding cassette subfamily C member 9 [Source:HGNC Symbol;Acc:HGNC:60]
15. RUFY2 1442 0.775 - - - - - - 0.775 - - - RUN and FYVE domain containing 2, transcript variant X1
16. NECAP2 ENSGALG00000003745 4899 0.773 - - - - - - - 0.773 - - NECAP endocytosis associated 2 [Source:NCBI gene;Acc:419464]
17. ACTG2 ENSGALG00000041634 4529 0.77 - - - - - - - 0.770 - - actin, gamma 2, smooth muscle, enteric [Source:NCBI gene;Acc:396084]
18. SGCB ENSGALG00000013968 3214 0.767 - - - - - - 0.767 - - - sarcoglycan beta [Source:NCBI gene;Acc:422760]
19. MTA1 ENSGALG00000002803 11572 0.763 - - - - - - 0.763 - - - metastasis associated 1 [Source:NCBI gene;Acc:429060]
20. ARID3B ENSGALG00000001376 4290 0.763 - - - - - - - 0.763 - - AT-rich interaction domain 3B [Source:NCBI gene;Acc:100859297]
21. CCDC109B CCDC109B 3222 0.759 - - - - - - - 0.759 - -
22. DDX19B ENSGALG00000039967 49600 0.758 - - - - - - 0.758 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
23. BRF1 ENSGALG00000011705 3406 0.758 - - - - - - 0.758 - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
24. CLK1 ENSGALG00000028438 3550 0.756 - - - - - - - 0.756 - - CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
25. RBP5 ENSGALG00000014662 31268 0.754 - - - - - - 0.754 - - - retinol binding protein 5 [Source:NCBI gene;Acc:418296]
26. ATPAF1 ENSGALG00000010444 3677 0.753 - - - - - - - - - 0.753 ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
27. TIA1 ENSGALG00000013879 16330 0.751 - - - - - - 0.751 - - - TIA1 cytotoxic granule associated RNA binding protein [Source:NCBI gene;Acc:771327]
28. ENSGALG00000006784 ENSGALG00000006784 1926 0.75 - - - - - - 0.750 - - -
29. CPT1A ENSGALG00000007077 3199 0.749 - - - - - - - 0.749 - - carnitine palmitoyltransferase 1A [Source:NCBI gene;Acc:423118]
30. NSMAF ENSGALG00000038838 2221 0.746 - - - - - - 0.746 - - - neutral sphingomyelinase activation associated factor [Source:HGNC Symbol;Acc:HGNC:8017]
31. NEO1 ENSGALG00000001774 10165 0.746 - - - - - - 0.746 - - - neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
32. GEMIN6 ENSGALG00000013821 5589 0.744 - - - - - - - - - 0.744 gem nuclear organelle associated protein 6 [Source:NCBI gene;Acc:426266]
33. LRRC40 ENSGALG00000011301 3409 0.743 - - - - - - 0.743 - - - leucine rich repeat containing 40 [Source:NCBI gene;Acc:424713]
34. TMEM41A ENSGALG00000006649 3309 0.743 - - - - - - 0.743 - - - transmembrane protein 41A [Source:NCBI gene;Acc:424875]
35. ENSGALG00000007514 ENSGALG00000007514 4866 0.742 - - - - - - - 0.742 - -
36. ARPC4 ENSGALG00000006691 33311 0.742 - - - - - - - 0.742 - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
37. APP ENSGALG00000015770 9438 0.742 - - - - - - - 0.742 - - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
38. SH3BGR ENSGALG00000016127 2561 0.742 - - - - - - 0.742 - - - SH3 domain binding glutamate rich protein
39. UBALD1 ENSGALG00000007619 8536 0.741 - - - - - - 0.741 - - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
40. NEK6 ENSGALG00000001118 20333 0.741 - - - - - - 0.741 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
41. PTK2 ENSGALG00000031741 13103 0.74 - - - - - - 0.740 - - - protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
42. SF3B4 ENSGALG00000013352 2054 0.739 - - - - - - 0.739 - - - splicing factor 3b subunit 4 [Source:HGNC Symbol;Acc:HGNC:10771]
43. CSTF2 ENSGALG00000006760 8820 0.738 - - - - - - - - - 0.738 cleavage stimulation factor subunit 2 [Source:NCBI gene;Acc:422258]
44. LSAMP ENSGALG00000040620 2226 0.736 - - - - - - 0.736 - - - limbic system-associated membrane protein [Source:NCBI gene;Acc:395687]
45. BNIP3L ENSGALG00000043405 10316 0.735 - - - - - - 0.735 - - - BCL2 interacting protein 3 like [Source:NCBI gene;Acc:419522]
46. MYC ENSGALG00000033631 16949 0.735 - - - - - - 0.735 - - - MYC proto-oncogene, bHLH transcription factor [Source:NCBI gene;Acc:420332]
47. ELL ENSGALG00000033513 6536 0.735 - - - - - - 0.735 - - - elongation factor for RNA polymerase II [Source:NCBI gene;Acc:420124]
48. TMEM183A ENSGALG00000000223 6915 0.734 - - - - - - 0.734 - - - transmembrane protein 183A [Source:NCBI gene;Acc:421156]
49. HMGCS1 ENSGALG00000014862 2846 0.734 - - - - - - 0.734 - - - 3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:NCBI gene;Acc:396379]
50. FTSJ3 ENSGALG00000032993 8929 0.734 - - - - - - 0.734 - - - FtsJ RNA methyltransferase homolog 3 [Source:NCBI gene;Acc:419943]
51. RNPS1 ENSGALG00000009288 13588 0.732 - - - - - - 0.732 - - - RNA binding protein with serine rich domain 1 [Source:HGNC Symbol;Acc:HGNC:10080]
52. PSMC3IP ENSGALG00000019741 5428 0.731 - - - - - - - - - 0.731 PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928]
53. ENSGALG00000026802 ENSGALG00000026802 14688 0.731 - - - - - - - 0.731 - -
54. CCDC134 ENSGALG00000011918 6994 0.731 - - - - - - 0.731 - - - coiled-coil domain containing 134 [Source:HGNC Symbol;Acc:HGNC:26185]
55. TTC4 10377 0.728 - - - - - - 0.728 - - - tetratricopeptide repeat domain 4
56. SWIP-1 SWIP-1 6024 0.727 - - - - - - - 0.727 - -
57. TOX2 ENSGALG00000003106 2472 0.726 - - - - - - - 0.726 - - TOX high mobility group box family member 2, transcript variant X1
58. HPRT1 ENSGALG00000006098 2216 0.725 - - - - - - 0.725 - - - hypoxanthine phosphoribosyltransferase 1 [Source:NCBI gene;Acc:395653]
59. FNDC3B ENSGALG00000009222 4689 0.724 - - - - - - - 0.724 - - fibronectin type III domain containing 3B [Source:NCBI gene;Acc:424984]
60. RANBP9 ENSGALG00000012696 4871 0.723 - - - - - - - 0.723 - - RAN binding protein 9 [Source:HGNC Symbol;Acc:HGNC:13727]
61. ANGPTL4 ENSGALG00000000619 1732 0.722 - - - - - - 0.722 - - - angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]
62. MEOX2 ENSGALG00000010794 1556 0.722 - - - - - - 0.722 - - - mesenchyme homeobox 2 [Source:NCBI gene;Acc:374137]
63. UBL3 ENSGALG00000017084 7417 0.722 - - - - - - 0.722 - - - ubiquitin like 3 [Source:NCBI gene;Acc:418921]
64. OSBP ENSGALG00000030548 439 0.721 - - - - - - - - - 0.721 oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
65. CSPG5 ENSGALG00000032184 991 0.721 - - - - - - 0.721 - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
66. TBC1D23 ENSGALG00000015273 4856 0.72 - - - - - - - 0.720 - - TBC1 domain family member 23 [Source:NCBI gene;Acc:418383]
67. TMED3 ENSGALG00000008272 2838 0.719 - - - - - - - 0.719 - - transmembrane p24 trafficking protein 3 [Source:NCBI gene;Acc:415580]
68. HSPBAP1 ENSGALG00000011677 1095 0.719 - - - - - - 0.719 - - - HSPB1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16389]
69. EPFIP1L ENSGALG00000007683 18050 0.718 - - - - - - 0.718 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
70. KDM3B ENSGALG00000007663 7189 0.718 - - - - - - 0.718 - - - lysine demethylase 3B [Source:HGNC Symbol;Acc:HGNC:1337]
71. MLST8 ENSGALG00000005878 8116 0.717 - - - - - - 0.717 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
72. FBXW2 ENSGALG00000000864 2995 0.716 - - - - - - 0.716 - - - F-box and WD repeat domain containing 2 [Source:NCBI gene;Acc:417088]
73. EVL ENSGALG00000011209 5440 0.715 - - - - - - - 0.715 - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
74. MYH9 ENSGALG00000043092 3026 0.714 - - - - - - - 0.714 - - myosin, heavy chain 9, non-muscle [Source:NCBI gene;Acc:396469]
75. SRF ENSGALG00000032029 6983 0.714 - - - - - - 0.714 - - - serum response factor [Source:NCBI gene;Acc:396103]
76. TRIM59 ENSGALG00000023571 2333 0.714 - - - - - - 0.714 - - - tripartite motif containing 59 [Source:NCBI gene;Acc:425013]
77. CLCN3 ENSGALG00000009674 3704 0.714 - - - - - - - 0.714 - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
78. UBE2D1 ENSGALG00000021213 5876 0.713 - - - - - - 0.713 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
79. TAF1D ENSGALG00000017220 3012 0.713 - - - - - - - 0.713 - - TATA-box binding protein associated factor, RNA polymerase I subunit D [Source:HGNC Symbol;Acc:HGNC:28759]
80. CARS ENSGALG00000006427 7660 0.713 - - - - - - 0.713 - - - cysteinyl-tRNA synthetase [Source:NCBI gene;Acc:423086]
81. NDUFAB1 ENSGALG00000006073 40467 0.712 - - - - - - 0.712 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
82. AMDHD2 ENSGALG00000009234 1730 0.712 - - - - - - - - - 0.712 Gallus gallus amidohydrolase domain containing 2 (AMDHD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001345995]
83. POLR3E ENSGALG00000007008 4010 0.712 - - - - - - - 0.712 - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
84. CNOT11 ENSGALG00000039563 11251 0.712 - - - - - - 0.712 - - - CCR4-NOT transcription complex subunit 11
85. BET1L ENSGALG00000004172 5305 0.711 - - - - - - 0.711 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
86. TFB2M ENSGALG00000010651 4374 0.71 - - - - - - 0.710 - - - transcription factor B2, mitochondrial
87. CKI CKI 2845 0.71 - - - - - - - 0.710 - -
88. ULK3 ENSGALG00000032215 1499 0.71 - - - - - - - 0.710 - - unc-51 like kinase 3 [Source:NCBI gene;Acc:769780]
89. TMEM38B ENSGALG00000027472 2465 0.709 - - - - - - - 0.709 - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
90. RUVBL1 ENSGALG00000005931 9379 0.709 - - - - - - 0.709 - - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
91. AMBRA1 ENSGALG00000008358 2865 0.709 - - - - - - - 0.709 - - autophagy and beclin 1 regulator 1 [Source:HGNC Symbol;Acc:HGNC:25990]
92. UTP20 ENSGALG00000011643 3012 0.708 - - - - - - 0.708 - - - UTP20, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]
93. PACS1 ENSGALG00000008567 1423 0.708 - - - - - - 0.708 - - - phosphofurin acidic cluster sorting protein 1, transcript variant X3
94. MCEE ENSGALG00000003913 1527 0.707 - - - - - - - 0.707 - - methylmalonyl-CoA epimerase [Source:NCBI gene;Acc:415385]
95. TMED10 ENSGALG00000010318 9317 0.707 - - - - - - - 0.707 - - transmembrane p24 trafficking protein 10 [Source:NCBI gene;Acc:423362]
96. UBXN2B ENSGALG00000030585 2177 0.707 - - - - - - 0.707 - - - UBX domain protein 2B [Source:NCBI gene;Acc:421135]
97. PTK7 ENSGALG00000008609 8081 0.706 - - - - - - 0.706 - - - protein tyrosine kinase 7 (inactive) [Source:NCBI gene;Acc:421257]
98. HPCAL1 ENSGALG00000016443 6633 0.706 - - - - - - 0.706 - - - hippocalcin like 1 [Source:NCBI gene;Acc:396161]
99. SMO ENSGALG00000036114 6559 0.706 - - - - - - 0.706 - - - smoothened, frizzled class receptor [Source:HGNC Symbol;Acc:HGNC:11119]
100. FANCG ENSGALG00000002009, ENSGALG00000034209 2528 0.706 - - - - - - 0.706 - - - Fanconi anemia complementation group G, transcript variant X1

There are 11 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA