Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TRIM55

Gene Name Gene ID Reads Annotation
TRIM55 ENSGALG00000041327 1097 tripartite motif containing 55 [Source:NCBI gene;Acc:420166]











Genes with expression patterns similar to TRIM55

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TRIM55 ENSGALG00000041327 1097 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif containing 55 [Source:NCBI gene;Acc:420166]
2. ACTC1 ENSGALG00000009844 20914 4.236 0.958 0.762 0.900 - - - - - 0.849 0.767 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
3. gga-mir-7474 ENSGALG00000033766 5727 2.485 0.908 - 0.849 - 0.728 - - - - - gga-mir-7474 [Source:miRBase;Acc:MI0024147]
4. KLHL31 ENSGALG00000016309 1518 2.419 0.878 0.714 0.827 - - - - - - - kelch like family member 31 [Source:HGNC Symbol;Acc:HGNC:21353]
5. SH3BGR ENSGALG00000016127 2561 2.37 0.867 - 0.789 - - 0.714 - - - - SH3 domain binding glutamate rich protein
6. TNNI1 ENSGALG00000000313 4069 2.352 0.799 0.776 0.777 - - - - - - - troponin I1, slow skeletal type [Source:HGNC Symbol;Acc:HGNC:11945]
7. TNNC2 ENSGALG00000006835 2963 2.34 - 0.767 0.821 - - - - - 0.752 - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
8. MYF5 ENSGALG00000028091 1965 2.273 - 0.718 0.822 - - 0.733 - - - - myogenic factor 5 [Source:NCBI gene;Acc:395633]
9. ASB18 ENSGALG00000046564 7 1.812 - - - - - 0.880 0.932 - - - ankyrin repeat and SOCS box containing 18 [Source:HGNC Symbol;Acc:HGNC:19770]
10. POPDC2 ENSGALG00000014988 281 1.809 0.882 - - - - - - 0.927 - - popeye domain containing 2 [Source:NCBI gene;Acc:404229]
11. MYL3 ENSGALG00000005448 3379 1.804 0.944 - 0.860 - - - - - - - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
12. RBM24 ENSGALG00000012712 4138 1.74 0.926 - 0.814 - - - - - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
13. TNNT3 ENSGALG00000006572 1652 1.724 - 0.829 0.895 - - - - - - - troponin T3, fast skeletal type [Source:NCBI gene;Acc:395761]
14. LASP-2 LASP-2 4415 1.694 0.884 - - - - - - 0.810 - -
15. ACTN2 ENSGALG00000014463 1724 1.671 0.918 - 0.753 - - - - - - - actinin alpha 2 [Source:NCBI gene;Acc:396263]
16. MYOG ENSGALG00000000172 460 1.666 - - 0.792 - - 0.874 - - - - myogenin [Source:NCBI gene;Acc:374004]
17. AQP12 AQP12 11 1.665 - - - - - 0.880 - 0.785 - -
18. LMOD2 ENSGALG00000008805 113 1.663 0.783 - - - - 0.880 - - - - leiomodin 2 [Source:NCBI gene;Acc:417751]
19. LEKR1 50 1.656 - - - - - 0.724 0.932 - - - leucine, glutamate and lysine rich 1, transcript variant X17
20. GJD2 ENSGALG00000009845 236 1.638 - - 0.858 - - - - - - 0.780 gap junction protein delta 2 [Source:NCBI gene;Acc:395273]
21. SMOC1 ENSGALG00000009415 2403 1.632 - - 0.791 - - - - - - 0.841 SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
22. XIRP1 ENSGALG00000006025 729 1.625 0.832 - 0.793 - - - - - - - xin actin binding repeat containing 1 [Source:NCBI gene;Acc:374266]
23. ACTA1 ENSGALG00000011086 2543 1.609 0.800 - 0.809 - - - - - - - actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]
24. C1QTNF3 ENSGALG00000027887 8646 1.584 - - 0.875 - 0.709 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
25. MYL2_1 ENSGALG00000004582 2367 1.582 - - 0.799 - - - - - 0.783 - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
26. TNNT2 ENSGALG00000000302 568 1.58 0.872 - 0.708 - - - - - - - troponin T2, cardiac type [Source:NCBI gene;Acc:396433]
27. NEXN ENSGALG00000008945 1504 1.572 0.730 - 0.842 - - - - - - - nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
28. MYL1 ENSGALG00000002907 1300 1.554 0.735 - 0.819 - - - - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
29. AMPD1 ENSGALG00000002082 228 1.518 - - 0.761 - - - - - 0.757 - adenosine monophosphate deaminase 1 [Source:HGNC Symbol;Acc:HGNC:468]
30. PAX1 ENSGALG00000039040 3339 1.516 - - 0.737 - - - - - - 0.779 paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
31. MYOD1 ENSGALG00000006216 568 1.476 - - - - - 0.707 - - - 0.769 myogenic differentiation 1 [Source:NCBI gene;Acc:374048]
32. TPM1 ENSGALG00000003521 11894 1.467 0.766 - 0.701 - - - - - - - tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
33. MYH1D ENSGALG00000027323 365 1.455 0.703 - 0.752 - - - - - - - Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
34. MYF6 ENSGALG00000010936 1143 1.451 - 0.705 - - - - - - 0.746 - myogenic factor 6 [Source:NCBI gene;Acc:417873]
35. CHOBF-1 CHOBF-1 41 0.988 - - - - - 0.988 - - - -
36. CHRNG ENSGALG00000007906 19 0.988 - - - - - 0.988 - - - - cholinergic receptor nicotinic gamma subunit [Source:NCBI gene;Acc:429151]
37. CCDC122 ENSGALG00000016968 5 0.956 - - - - - 0.956 - - - - coiled-coil domain containing 122 [Source:HGNC Symbol;Acc:HGNC:26478]
38. DNAH12 ENSGALG00000005601 80 0.95 - - - - - - 0.950 - - - dynein, axonemal, heavy chain 12, transcript variant X6
39. ECT2 ENSGALG00000009157 31 0.949 - - - - - 0.949 - - - - epithelial cell transforming 2, transcript variant X7
40. TNNC1 ENSGALG00000001459 7110 0.945 0.945 - - - - - - - - - troponin C1, slow skeletal and cardiac type [Source:NCBI gene;Acc:396032]
41. LRP3 ENSGALG00000004853 13 0.937 - - - - - - 0.937 - - - LDL receptor related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
42. HSPB7L ENSGALG00000028183 795 0.936 0.936 - - - - - - - - - heat shock protein beta-7-like
43. MYL2 ENSGALG00000004582 2245 0.935 0.935 - - - - - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
44. SI ENSGALG00000009511 5 0.932 - - - - - - 0.932 - - - sucrase-isomaltase
45. ENSGALG00000028577 ENSGALG00000028577 4 0.932 - - - - - - 0.932 - - -
46. CA15L ENSGALG00000005896 4 0.932 - - - - - - 0.932 - - - carbonic anhydrase 15-like
47. BFSP1 ENSGALG00000008735 17 0.932 - - - - - - 0.932 - - - beaded filament structural protein 1 [Source:NCBI gene;Acc:396056]
48. TEKT1 ENSGALG00000006064 18 0.932 - - - - - - 0.932 - - - tektin 1 [Source:HGNC Symbol;Acc:HGNC:15534]
49. SLC6A11 ENSGALG00000004879 16 0.932 - - - - - - 0.932 - - - solute carrier family 6 member 11 [Source:HGNC Symbol;Acc:HGNC:11044]
50. NIM1 NIM1 18 0.932 - - - - - - 0.932 - - -
51. FAM65C 36 0.927 - - - - - - - 0.927 - - family with sequence similarity 65 member C, transcript variant X29
52. VPS37A ENSGALG00000013646 55 0.927 - - - - - 0.927 - - - - VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
53. BRSK2 ENSGALG00000006681 158 0.923 - - - - - - 0.923 - - - BR serine/threonine kinase 2 [Source:NCBI gene;Acc:423098]
54. GRIN1 ENSGALG00000008898 18 0.923 - - - - - - 0.923 - - - glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
55. HMGCLL1 ENSGALG00000016294 33 0.923 - - - - - - 0.923 - - - 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 [Source:HGNC Symbol;Acc:HGNC:21359]
56. ADRA1D ENSGALG00000038787 54 0.923 - - - - - - 0.923 - - - adrenoceptor alpha 1D
57. MYBPC3 ENSGALG00000008148 315 0.92 0.920 - - - - - - - - - myosin binding protein C, cardiac [Source:NCBI gene;Acc:396013]
58. MGMT ENSGALG00000042949 53 0.914 - - - - - - 0.914 - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
59. TPM4 ENSGALG00000002563 15621 0.911 0.911 - - - - - - - - - tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
60. ENSGALG00000023694 ENSGALG00000023694 45 0.909 - - - - - - 0.909 - - -
61. SAMSN1 ENSGALG00000040926 88 0.909 - - - - - - 0.909 - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
62. CNTN1 ENSGALG00000009523 158 0.896 - - - - - - - 0.896 - - contactin 1 [Source:NCBI gene;Acc:417786]
63. LHFPL5 ENSGALG00000039170 247 0.896 - - - - - - 0.896 - - - LHFPL tetraspan subfamily member 5 [Source:NCBI gene;Acc:378916]
64. NAAA ENSGALG00000011529 401 0.894 - - - - - - 0.894 - - - N-acylethanolamine acid amidase [Source:HGNC Symbol;Acc:HGNC:736]
65. EF1A EF1A 2378 0.894 0.894 - - - - - - - - -
66. VCAM1 ENSGALG00000005257 102 0.893 0.893 - - - - - - - - - vascular cell adhesion molecule 1, transcript variant X1
67. CSRP3 ENSGALG00000004044 456 0.893 0.893 - - - - - - - - - cysteine and glycine rich protein 3 [Source:NCBI gene;Acc:422979]
68. CCDC141 ENSGALG00000020788 606 0.892 0.892 - - - - - - - - - coiled-coil domain containing 141, transcript variant X5
69. CRIM1 ENSGALG00000032640 506 0.89 - - - - - - 0.890 - - - cysteine rich transmembrane BMP regulator 1 [Source:NCBI gene;Acc:395067]
70. MYH15 ENSGALG00000015358 6304 0.888 0.888 - - - - - - - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
71. SPTSSBL ENSGALG00000026131 70 0.884 - - - - - - 0.884 - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
72. PPAP2C PPAP2C 1 0.88 - - - - - 0.880 - - - -
73. UBE2J1 ENSGALG00000015775 13 0.88 - - - - - 0.880 - - - - ubiquitin conjugating enzyme E2 J1 [Source:NCBI gene;Acc:395528]
74. NR2E1 ENSGALG00000015305 3 0.88 - - - - - 0.880 - - - - nuclear receptor subfamily 2 group E member 1 [Source:NCBI gene;Acc:396082]
75. VIT ENSGALG00000010583 16 0.88 - - - - - 0.880 - - - - vitrin [Source:NCBI gene;Acc:421471]
76. CDK6 ENSGALG00000009476 17 0.88 - - - - - 0.880 - - - - cyclin dependent kinase 6 [Source:NCBI gene;Acc:420558]
77. ENSGALG00000026544 ENSGALG00000026544 1 0.88 - - - - - 0.880 - - - -
78. ENSGALG00000014502 ENSGALG00000014502 2 0.88 - - - - - 0.880 - - - -
79. KNG1 ENSGALG00000046159 17 0.88 - - - - - 0.880 - - - - kininogen 1 [Source:HGNC Symbol;Acc:HGNC:6383]
80. ENSGALG00000011567 ENSGALG00000011567 2 0.88 - - - - - 0.880 - - - -
81. ENSGALG00000008404 ENSGALG00000008404 6 0.88 - - - - - 0.880 - - - -
82. PLAGL2 ENSGALG00000006586 3 0.88 - - - - - 0.880 - - - - PLAG1 like zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:9047]
83. NCAM2 ENSGALG00000015737 5 0.88 - - - - - 0.880 - - - - neural cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:7657]
84. RGS6 ENSGALG00000009368 19 0.88 - - - - - 0.880 - - - - regulator of G-protein signaling 6 [Source:NCBI gene;Acc:395618]
85. AIM1 51 0.88 - - - - - 0.880 - - - - absent in melanoma 1, transcript variant X2
86. ENSGALG00000018374 ENSGALG00000018374 3 0.88 - - - - - 0.880 - - - -
87. MCOLN2 ENSGALG00000008722 33 0.88 - - - - - 0.880 - - - - mucolipin 2 [Source:HGNC Symbol;Acc:HGNC:13357]
88. FAM237A ENSGALG00000020836 21 0.88 - - - - - 0.880 - - - - family with sequence similarity 237 member A [Source:HGNC Symbol;Acc:HGNC:52388]
89. ENSGALG00000016493 ENSGALG00000016493 2 0.88 - - - - - 0.880 - - - -
90. ADAMTS8 ENSGALG00000001370 0 0.88 - - - - - 0.880 - - - - ADAM metallopeptidase with thrombospondin type 1 motif 8 [Source:HGNC Symbol;Acc:HGNC:224]
91. ENSGALG00000026657 ENSGALG00000026657 4 0.88 - - - - - 0.880 - - - -
92. PAH ENSGALG00000012754 15 0.88 - - - - - 0.880 - - - - phenylalanine hydroxylase [Source:NCBI gene;Acc:408024]
93. SCMH1 ENSGALG00000000672 3 0.88 - - - - - 0.880 - - - - Scm polycomb group protein homolog 1 [Source:HGNC Symbol;Acc:HGNC:19003]
94. SCN5A ENSGALG00000006112 137 0.88 - - - - - 0.880 - - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
95. SNORA35 SNORA35 0 0.88 - - - - - 0.880 - - - -
96. ENSGALG00000009151 ENSGALG00000009151 6 0.88 - - - - - 0.880 - - - -
97. DRG11 DRG11 32 0.88 - - - - - 0.880 - - - -
98. SPIA5 ENSGALG00000020390 0 0.88 - - - - - 0.880 - - - - serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5, transcript variant X1
99. SLC6A17 ENSGALG00000000394 10 0.88 - - - - - 0.880 - - - - solute carrier family 6 member 17 [Source:HGNC Symbol;Acc:HGNC:31399]
100. PPP1R9A 4 0.88 - - - - - 0.880 - - - - protein phosphatase 1 regulatory subunit 9A, transcript variant X6

There are 295 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA