Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TRIM55

Gene Name Gene ID Reads Annotation
TRIM55 ENSGALG00000041327 1097 tripartite motif containing 55 [Source:NCBI gene;Acc:420166]











Genes with expression patterns similar to TRIM55

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TRIM55 ENSGALG00000041327 1097 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif containing 55 [Source:NCBI gene;Acc:420166]
2. ACTC1 ENSGALG00000009844 20914 4.236 0.958 0.762 0.900 - - - - - 0.849 0.767 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
3. gga-mir-7474 ENSGALG00000033766 5727 2.485 0.908 - 0.849 - 0.728 - - - - - gga-mir-7474 [Source:miRBase;Acc:MI0024147]
4. KLHL31 ENSGALG00000016309 1518 2.419 0.878 0.714 0.827 - - - - - - - kelch like family member 31 [Source:HGNC Symbol;Acc:HGNC:21353]
5. SH3BGR ENSGALG00000016127 2561 2.37 0.867 - 0.789 - - 0.714 - - - - SH3 domain binding glutamate rich protein
6. TNNI1 ENSGALG00000000313 4069 2.352 0.799 0.776 0.777 - - - - - - - troponin I1, slow skeletal type [Source:HGNC Symbol;Acc:HGNC:11945]
7. TNNC2 ENSGALG00000006835 2963 2.34 - 0.767 0.821 - - - - - 0.752 - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
8. MYF5 ENSGALG00000028091 1965 2.273 - 0.718 0.822 - - 0.733 - - - - myogenic factor 5 [Source:NCBI gene;Acc:395633]
9. ASB18 ENSGALG00000046564 7 1.812 - - - - - 0.880 0.932 - - - ankyrin repeat and SOCS box containing 18 [Source:HGNC Symbol;Acc:HGNC:19770]
10. POPDC2 ENSGALG00000014988 281 1.809 0.882 - - - - - - 0.927 - - popeye domain containing 2 [Source:NCBI gene;Acc:404229]
11. MYL3 ENSGALG00000005448 3379 1.804 0.944 - 0.860 - - - - - - - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
12. RBM24 ENSGALG00000012712 4138 1.74 0.926 - 0.814 - - - - - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
13. TNNT3 ENSGALG00000006572 1652 1.724 - 0.829 0.895 - - - - - - - troponin T3, fast skeletal type [Source:NCBI gene;Acc:395761]
14. LASP-2 LASP-2 4415 1.694 0.884 - - - - - - 0.810 - -
15. ACTN2 ENSGALG00000014463 1724 1.671 0.918 - 0.753 - - - - - - - actinin alpha 2 [Source:NCBI gene;Acc:396263]
16. MYOG ENSGALG00000000172 460 1.666 - - 0.792 - - 0.874 - - - - myogenin [Source:NCBI gene;Acc:374004]
17. AQP12 AQP12 11 1.665 - - - - - 0.880 - 0.785 - -
18. LMOD2 ENSGALG00000008805 113 1.663 0.783 - - - - 0.880 - - - - leiomodin 2 [Source:NCBI gene;Acc:417751]
19. LEKR1 50 1.656 - - - - - 0.724 0.932 - - - leucine, glutamate and lysine rich 1, transcript variant X17
20. GJD2 ENSGALG00000009845 236 1.638 - - 0.858 - - - - - - 0.780 gap junction protein delta 2 [Source:NCBI gene;Acc:395273]
21. SMOC1 ENSGALG00000009415 2403 1.632 - - 0.791 - - - - - - 0.841 SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
22. XIRP1 ENSGALG00000006025 729 1.625 0.832 - 0.793 - - - - - - - xin actin binding repeat containing 1 [Source:NCBI gene;Acc:374266]
23. ACTA1 ENSGALG00000011086 2543 1.609 0.800 - 0.809 - - - - - - - actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]
24. C1QTNF3 ENSGALG00000027887 8646 1.584 - - 0.875 - 0.709 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
25. MYL2_1 ENSGALG00000004582 2367 1.582 - - 0.799 - - - - - 0.783 - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
26. TNNT2 ENSGALG00000000302 568 1.58 0.872 - 0.708 - - - - - - - troponin T2, cardiac type [Source:NCBI gene;Acc:396433]
27. NEXN ENSGALG00000008945 1504 1.572 0.730 - 0.842 - - - - - - - nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
28. MYL1 ENSGALG00000002907 1300 1.554 0.735 - 0.819 - - - - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
29. AMPD1 ENSGALG00000002082 228 1.518 - - 0.761 - - - - - 0.757 - adenosine monophosphate deaminase 1 [Source:HGNC Symbol;Acc:HGNC:468]
30. PAX1 ENSGALG00000039040 3339 1.516 - - 0.737 - - - - - - 0.779 paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
31. MYOD1 ENSGALG00000006216 568 1.476 - - - - - 0.707 - - - 0.769 myogenic differentiation 1 [Source:NCBI gene;Acc:374048]
32. TPM1 ENSGALG00000003521 11894 1.467 0.766 - 0.701 - - - - - - - tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
33. MYH1D ENSGALG00000027323 365 1.455 0.703 - 0.752 - - - - - - - Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
34. MYF6 ENSGALG00000010936 1143 1.451 - 0.705 - - - - - - 0.746 - myogenic factor 6 [Source:NCBI gene;Acc:417873]
35. CHOBF-1 CHOBF-1 41 0.988 - - - - - 0.988 - - - -
36. CHRNG ENSGALG00000007906 19 0.988 - - - - - 0.988 - - - - cholinergic receptor nicotinic gamma subunit [Source:NCBI gene;Acc:429151]
37. CCDC122 ENSGALG00000016968 5 0.956 - - - - - 0.956 - - - - coiled-coil domain containing 122 [Source:HGNC Symbol;Acc:HGNC:26478]
38. DNAH12 ENSGALG00000005601 80 0.95 - - - - - - 0.950 - - - dynein, axonemal, heavy chain 12, transcript variant X6
39. ECT2 ENSGALG00000009157 31 0.949 - - - - - 0.949 - - - - epithelial cell transforming 2, transcript variant X7
40. TNNC1 ENSGALG00000001459 7110 0.945 0.945 - - - - - - - - - troponin C1, slow skeletal and cardiac type [Source:NCBI gene;Acc:396032]
41. LRP3 ENSGALG00000004853 13 0.937 - - - - - - 0.937 - - - LDL receptor related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
42. HSPB7L ENSGALG00000028183 795 0.936 0.936 - - - - - - - - - heat shock protein beta-7-like
43. MYL2 ENSGALG00000004582 2245 0.935 0.935 - - - - - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
44. ENSGALG00000028577 ENSGALG00000028577 4 0.932 - - - - - - 0.932 - - -
45. CA15L ENSGALG00000005896 4 0.932 - - - - - - 0.932 - - - carbonic anhydrase 15-like
46. BFSP1 ENSGALG00000008735 17 0.932 - - - - - - 0.932 - - - beaded filament structural protein 1 [Source:NCBI gene;Acc:396056]
47. TEKT1 ENSGALG00000006064 18 0.932 - - - - - - 0.932 - - - tektin 1 [Source:HGNC Symbol;Acc:HGNC:15534]
48. NIM1 NIM1 18 0.932 - - - - - - 0.932 - - -
49. SLC6A11 ENSGALG00000004879 16 0.932 - - - - - - 0.932 - - - solute carrier family 6 member 11 [Source:HGNC Symbol;Acc:HGNC:11044]
50. SI ENSGALG00000009511 5 0.932 - - - - - - 0.932 - - - sucrase-isomaltase
51. FAM65C 36 0.927 - - - - - - - 0.927 - - family with sequence similarity 65 member C, transcript variant X29
52. VPS37A ENSGALG00000013646 55 0.927 - - - - - 0.927 - - - - VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
53. HMGCLL1 ENSGALG00000016294 33 0.923 - - - - - - 0.923 - - - 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 [Source:HGNC Symbol;Acc:HGNC:21359]
54. GRIN1 ENSGALG00000008898 18 0.923 - - - - - - 0.923 - - - glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
55. ADRA1D ENSGALG00000038787 54 0.923 - - - - - - 0.923 - - - adrenoceptor alpha 1D
56. BRSK2 ENSGALG00000006681 158 0.923 - - - - - - 0.923 - - - BR serine/threonine kinase 2 [Source:NCBI gene;Acc:423098]
57. MYBPC3 ENSGALG00000008148 315 0.92 0.920 - - - - - - - - - myosin binding protein C, cardiac [Source:NCBI gene;Acc:396013]
58. MGMT ENSGALG00000042949 53 0.914 - - - - - - 0.914 - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
59. TPM4 ENSGALG00000002563 15621 0.911 0.911 - - - - - - - - - tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
60. ENSGALG00000023694 ENSGALG00000023694 45 0.909 - - - - - - 0.909 - - -
61. SAMSN1 ENSGALG00000040926 88 0.909 - - - - - - 0.909 - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
62. LHFPL5 ENSGALG00000039170 247 0.896 - - - - - - 0.896 - - - LHFPL tetraspan subfamily member 5 [Source:NCBI gene;Acc:378916]
63. CNTN1 ENSGALG00000009523 158 0.896 - - - - - - - 0.896 - - contactin 1 [Source:NCBI gene;Acc:417786]
64. EF1A EF1A 2378 0.894 0.894 - - - - - - - - -
65. NAAA ENSGALG00000011529 401 0.894 - - - - - - 0.894 - - - N-acylethanolamine acid amidase [Source:HGNC Symbol;Acc:HGNC:736]
66. VCAM1 ENSGALG00000005257 102 0.893 0.893 - - - - - - - - - vascular cell adhesion molecule 1, transcript variant X1
67. CSRP3 ENSGALG00000004044 456 0.893 0.893 - - - - - - - - - cysteine and glycine rich protein 3 [Source:NCBI gene;Acc:422979]
68. CCDC141 ENSGALG00000020788 606 0.892 0.892 - - - - - - - - - coiled-coil domain containing 141, transcript variant X5
69. CRIM1 ENSGALG00000032640 506 0.89 - - - - - - 0.890 - - - cysteine rich transmembrane BMP regulator 1 [Source:NCBI gene;Acc:395067]
70. MYH15 ENSGALG00000015358 6304 0.888 0.888 - - - - - - - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
71. SPTSSBL ENSGALG00000026131 70 0.884 - - - - - - 0.884 - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
72. AUTS2 ENSGALG00000001153 24 0.88 - - - - - 0.880 - - - - AUTS2, activator of transcription and developmental regulator [Source:HGNC Symbol;Acc:HGNC:14262]
73. FAM46D 22 0.88 - - - - - 0.880 - - - - family with sequence similarity 46 member D
74. SLC16A3 ENSGALG00000002728 323 0.88 - - - - - 0.880 - - - - solute carrier family 16 member 3 [Source:NCBI gene;Acc:395383]
75. USP19 ENSGALG00000006824 44 0.88 - - - - - 0.880 - - - - ubiquitin specific peptidase 19 [Source:HGNC Symbol;Acc:HGNC:12617]
76. WDR86 ENSGALG00000019690 113 0.88 - - - - - 0.880 - - - - WD repeat domain 86 [Source:HGNC Symbol;Acc:HGNC:28020]
77. ENSGALG00000013327 ENSGALG00000013327 16 0.88 - - - - - 0.880 - - - -
78. DRD5 ENSGALG00000014975 1 0.88 - - - - - 0.880 - - - - dopamine receptor D5 [Source:HGNC Symbol;Acc:HGNC:3026]
79. ABCC8 ENSGALG00000006172 41 0.88 - - - - - 0.880 - - - - ATP binding cassette subfamily C member 8 [Source:HGNC Symbol;Acc:HGNC:59]
80. ILDR2 ENSGALG00000015458 16 0.88 - - - - - 0.880 - - - - immunoglobulin like domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:18131]
81. CPNE4 ENSGALG00000029235 32 0.88 - - - - - 0.880 - - - - copine 4 [Source:HGNC Symbol;Acc:HGNC:2317]
82. TRIM41 ENSGALG00000030569 5 0.88 - - - - - 0.880 - - - - tripartite motif containing 41 [Source:NCBI gene;Acc:417043]
83. LAD1 ENSGALG00000000309 2 0.88 - - - - - 0.880 - - - - ladinin 1 [Source:HGNC Symbol;Acc:HGNC:6472]
84. SRRL ENSGALG00000002638 26 0.88 - - - - - 0.880 - - - - serine racemase-like, transcript variant X8
85. SYNJ1 ENSGALG00000034317 7 0.88 - - - - - 0.880 - - - - synaptojanin 1 [Source:HGNC Symbol;Acc:HGNC:11503]
86. IL19 ENSGALG00000000911 1 0.88 - - - - - 0.880 - - - - interleukin 19 [Source:HGNC Symbol;Acc:HGNC:5990]
87. MTMR11 ENSGALG00000035923 1 0.88 - - - - - 0.880 - - - - myotubularin related protein 11 [Source:HGNC Symbol;Acc:HGNC:24307]
88. MEP1A ENSGALG00000033033 2 0.88 - - - - - 0.880 - - - - meprin A subunit alpha [Source:NCBI gene;Acc:422060]
89. CDO1 ENSGALG00000002358 74 0.88 - - - - - 0.880 - - - - cysteine dioxygenase type 1 [Source:HGNC Symbol;Acc:HGNC:1795]
90. ZC2HC1B 15 0.88 - - - - - 0.880 - - - - zinc finger C2HC-type containing 1B
91. SLC26A9 ENSGALG00000000745 1 0.88 - - - - - 0.880 - - - - solute carrier family 26 member 9 [Source:HGNC Symbol;Acc:HGNC:14469]
92. EXOC6B ENSGALG00000016098 3 0.88 - - - - - 0.880 - - - - exocyst complex component 6B [Source:HGNC Symbol;Acc:HGNC:17085]
93. SYTL2L ENSGALG00000008326 5 0.88 - - - - - 0.880 - - - - synaptotagmin-like protein 2-like, transcript variant X4
94. SLC10A2 ENSGALG00000016858 4 0.88 - - - - - 0.880 - - - - Gallus gallus solute carrier family 10 member 2 (SLC10A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319027]
95. SNORD95 SNORD95 6 0.88 - - - - - 0.880 - - - -
96. DSCAM ENSGALG00000016138 16 0.88 - - - - - 0.880 - - - - DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
97. AVP ENSGALG00000014117 19 0.88 - - - - - 0.880 - - - - arginine vasopressin [Source:NCBI gene;Acc:396101]
98. FEM1A ENSGALG00000004168 14 0.88 - - - - - 0.880 - - - - fem-1 homolog A [Source:HGNC Symbol;Acc:HGNC:16934]
99. ENSGALG00000001004 ENSGALG00000001004 17 0.88 - - - - - 0.880 - - - -
100. DNER ENSGALG00000002958 3 0.88 - - - - - 0.880 - - - - delta/notch like EGF repeat containing [Source:HGNC Symbol;Acc:HGNC:24456]

There are 295 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA