Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TPM1

Gene Name Gene ID Reads Annotation
TPM1 ENSGALG00000003521 11894 tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]











Genes with expression patterns similar to TPM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TPM1 ENSGALG00000003521 11894 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
2. ACTC1 ENSGALG00000009844 20914 5.813 0.851 - 0.825 0.886 0.877 - 0.774 - 0.817 0.783 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
3. gga-mir-7474 ENSGALG00000033766 5727 3.996 0.823 - 0.734 0.827 0.854 - - - - 0.758 gga-mir-7474 [Source:miRBase;Acc:MI0024147]
4. TNNC2 ENSGALG00000006835 2963 3.97 0.818 - 0.822 0.800 0.799 - - - 0.731 - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
5. ACTA1 ENSGALG00000011086 2543 3.209 0.814 - 0.751 0.837 0.807 - - - - - actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]
6. MYL1 ENSGALG00000002907 1300 3.157 0.757 - - 0.821 0.877 - - - 0.702 - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
7. TNNT3 ENSGALG00000006572 1652 2.372 - - 0.779 0.832 - - - - - 0.761 troponin T3, fast skeletal type [Source:NCBI gene;Acc:395761]
8. MYH15 ENSGALG00000015358 6304 2.337 - - - 0.796 0.810 - - - 0.731 - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
9. GGMOXR1 GGMOXR1 6734 2.312 - - 0.727 0.767 0.818 - - - - -
10. MYL2_1 ENSGALG00000004582 2367 2.31 - - 0.726 - 0.839 - - - 0.745 - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
11. C1QTNF3 ENSGALG00000027887 8646 2.3 - - 0.729 0.755 0.816 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
12. RBM24 ENSGALG00000012712 4138 2.299 0.822 - 0.736 - 0.741 - - - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
13. XIRP1 ENSGALG00000006025 729 2.257 - - - 0.779 0.769 - 0.709 - - - xin actin binding repeat containing 1 [Source:NCBI gene;Acc:374266]
14. TNNI1 ENSGALG00000000313 4069 2.245 0.826 - - 0.700 0.719 - - - - - troponin I1, slow skeletal type [Source:HGNC Symbol;Acc:HGNC:11945]
15. HSPB8 ENSGALG00000007383 5333 2.242 0.719 - - 0.725 - - 0.798 - - - heat shock protein family B (small) member 8 [Source:HGNC Symbol;Acc:HGNC:30171]
16. EN1 ENSGALG00000042389 3051 1.581 - - - 0.755 0.826 - - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
17. BRT-1 BRT-1 26083 1.573 - - - 0.714 0.859 - - - - -
18. TITIN TITIN 589 1.538 - - - 0.758 - - - - - 0.780
19. NEXN ENSGALG00000008945 1504 1.519 - - 0.773 0.746 - - - - - - nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
20. TNNC1 ENSGALG00000001459 7110 1.502 0.746 - - - 0.756 - - - - - troponin C1, slow skeletal and cardiac type [Source:NCBI gene;Acc:396032]
21. MYBPC1 ENSGALG00000012783 317 1.495 - - - 0.750 0.745 - - - - - myosin binding protein C, slow type [Source:HGNC Symbol;Acc:HGNC:7549]
22. RGMA ENSGALG00000039173 12874 1.489 - - - 0.787 - - 0.702 - - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
23. WSB2 ENSGALG00000008151 13246 1.482 - - - - - - 0.712 0.770 - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
24. TRIM55 ENSGALG00000041327 1097 1.467 0.766 - 0.701 - - - - - - - tripartite motif containing 55 [Source:NCBI gene;Acc:420166]
25. TCF15 ENSGALG00000026276 3646 1.466 - - - 0.734 0.732 - - - - - transcription factor 15 [Source:NCBI gene;Acc:395788]
26. MYL3 ENSGALG00000005448 3379 1.464 0.732 - 0.732 - - - - - - - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
27. BHMT ENSGALG00000004518 4700 1.456 - - 0.746 - - - - - - 0.710 betaine--homocysteine S-methyltransferase
28. MYOZ2 ENSGALG00000011991 714 1.441 0.729 - - - 0.712 - - - - - myozenin 2 [Source:NCBI gene;Acc:422682]
29. LECT1 LECT1 12694 1.431 - - - - 0.706 - - - - 0.725
30. MCF2L ENSGALG00000016834 1216 1.425 - - - 0.715 0.710 - - - - - MCF.2 cell line derived transforming sequence like [Source:NCBI gene;Acc:418748]
31. MYH9 ENSGALG00000043092 3026 0.877 - - - - - - - 0.877 - - myosin, heavy chain 9, non-muscle [Source:NCBI gene;Acc:396469]
32. EGFLAM ENSGALG00000003726 4588 0.83 - - - - - - - 0.830 - - EGF like, fibronectin type III and laminin G domains, transcript variant X1
33. PKD2L2 ENSGALG00000006120 592 0.808 - - - - 0.808 - - - - - polycystin 2 like 2, transient receptor potential cation channel [Source:HGNC Symbol;Acc:HGNC:9012]
34. SFXN3 ENSGALG00000023621 2957 0.807 - - - - - - - 0.807 - - sideroflexin 3 [Source:HGNC Symbol;Acc:HGNC:16087]
35. REEP5 ENSGALG00000023157 6282 0.804 - - - - - - - 0.804 - - receptor accessory protein 5 [Source:NCBI gene;Acc:770021]
36. ANXA8 ENSGALG00000005956 479 0.801 - - - - - - - 0.801 - - annexin A8, transcript variant X1
37. TMED3 ENSGALG00000008272 2838 0.789 - - - - - - - 0.789 - - transmembrane p24 trafficking protein 3 [Source:NCBI gene;Acc:415580]
38. SGK3 ENSGALG00000043570 2045 0.789 - - - - - - - 0.789 - - serum/glucocorticoid regulated kinase family member 3 [Source:NCBI gene;Acc:420167]
39. TBC1D4 ENSGALG00000016925 2961 0.788 - - - - - - - 0.788 - - TBC1 domain family member 4 [Source:HGNC Symbol;Acc:HGNC:19165]
40. ADAMTS10 ENSGALG00000033157 243 0.786 - - - - - 0.786 - - - - ADAM metallopeptidase with thrombospondin type 1 motif 10 [Source:HGNC Symbol;Acc:HGNC:13201]
41. TAGLN ENSGALG00000011902 12030 0.785 - 0.785 - - - - - - - - transgelin [Source:NCBI gene;Acc:396490]
42. TRIM8 ENSGALG00000036785 5304 0.784 - - - - - - - 0.784 - - tripartite motif containing 8 [Source:NCBI gene;Acc:423864]
43. TOX2 ENSGALG00000003106 2472 0.78 - - - - - - - 0.780 - - TOX high mobility group box family member 2, transcript variant X1
44. ENOX1 ENSGALG00000016967 1123 0.778 - - - - - - - 0.778 - - ecto-NOX disulfide-thiol exchanger 1 [Source:HGNC Symbol;Acc:HGNC:25474]
45. MMP2 ENSGALG00000003580 13120 0.777 - - - - - - - 0.777 - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
46. FXYD6 ENSGALG00000025937 4073 0.776 - - - - - - - 0.776 - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
47. KLHL31 ENSGALG00000016309 1518 0.775 0.775 - - - - - - - - - kelch like family member 31 [Source:HGNC Symbol;Acc:HGNC:21353]
48. AMT ENSGALG00000025844 4465 0.772 - - - - - - - 0.772 - - aminomethyltransferase [Source:NCBI gene;Acc:395566]
49. VIMENTIN VIMENTIN 33105 0.769 - - - - - - 0.769 - - -
50. CMTM8 ENSGALG00000011484 2826 0.767 - - - - - - - 0.767 - - CKLF like MARVEL transmembrane domain containing 8 [Source:NCBI gene;Acc:420665]
51. PRKCDBP PRKCDBP 2249 0.767 - - - - - - - 0.767 - -
52. MAP1LC3A ENSGALG00000038721 2230 0.766 - - - - - - - 0.766 - - microtubule associated protein 1 light chain 3 alpha
53. KXD1 ENSGALG00000036736 3771 0.764 - - - - - - 0.764 - - - KxDL motif containing 1 [Source:HGNC Symbol;Acc:HGNC:28420]
54. PAX-9 PAX-9 491 0.763 - - - - 0.763 - - - - -
55. ACTN2 ENSGALG00000014463 1724 0.762 0.762 - - - - - - - - - actinin alpha 2 [Source:NCBI gene;Acc:396263]
56. BBOX1 ENSGALG00000013297 4119 0.762 - - - - - - - 0.762 - - gamma-butyrobetaine hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:964]
57. PPAPDC1A PPAPDC1A 2790 0.762 - - - 0.762 - - - - - -
58. LASP-2 LASP-2 4415 0.76 0.760 - - - - - - - - -
59. LPAR4 ENSGALG00000004121 2543 0.759 - - - - - - - 0.759 - - lysophosphatidic acid receptor 4 [Source:NCBI gene;Acc:422149]
60. FOXD1 ENSGALG00000012644 2296 0.759 - - - - - - - - - 0.759 forkhead box D1 [Source:NCBI gene;Acc:396109]
61. CRAC1A CRAC1A 5265 0.758 - - - - - - - 0.758 - -
62. AKR1D1 ENSGALG00000012834 15183 0.756 - - 0.756 - - - - - - - aldo-keto reductase family 1 member D1 [Source:NCBI gene;Acc:418107]
63. IFFO1 ENSGALG00000014443 2528 0.753 - - - - - - - 0.753 - - intermediate filament family orphan 1 [Source:HGNC Symbol;Acc:HGNC:24970]
64. GPC4 ENSGALG00000006080 56498 0.753 - - 0.753 - - - - - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
65. FBXO21 ENSGALG00000008201 2608 0.751 - - - - - - - 0.751 - - F-box protein 21 [Source:HGNC Symbol;Acc:HGNC:13592]
66. ABCC9 ENSGALG00000013244 2153 0.748 - - - - - - - 0.748 - - ATP binding cassette subfamily C member 9 [Source:HGNC Symbol;Acc:HGNC:60]
67. LGR5 ENSGALG00000010163 2931 0.748 - - - - - - - - - 0.748 leucine rich repeat containing G protein-coupled receptor 5 [Source:HGNC Symbol;Acc:HGNC:4504]
68. FBN1 ENSGALG00000004960 2130 0.747 - - - - - - - 0.747 - - fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
69. HS3ST1 ENSGALG00000014934 182 0.745 - - - - - - - 0.745 - - heparan sulfate-glucosamine 3-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5194]
70. BMP3 ENSGALG00000035052 3260 0.744 - - - 0.744 - - - - - - bone morphogenetic protein 3 [Source:NCBI gene;Acc:422581]
71. HSPB1 ENSGALG00000001926 2377 0.743 0.743 - - - - - - - - - heat shock protein family B (small) member 1 [Source:NCBI gene;Acc:396227]
72. MPI ENSGALG00000029296 11781 0.742 - - - - - - 0.742 - - - mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
73. RBP4 ENSGALG00000015374 122 0.742 - - - - - - - 0.742 - - retinol binding protein 4 [Source:NCBI gene;Acc:396454]
74. ENSGALG00000011687 ENSGALG00000011687 4553 0.741 - - - - - - - 0.741 - -
75. ABHD17C ENSGALG00000006420 2220 0.741 - - - - - - - 0.741 - - abhydrolase domain containing 17C [Source:NCBI gene;Acc:415479]
76. SH3BGR ENSGALG00000016127 2561 0.74 0.740 - - - - - - - - - SH3 domain binding glutamate rich protein
77. SHISA3 ENSGALG00000026042 1108 0.74 - - - - 0.740 - - - - - shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
78. MCEE ENSGALG00000003913 1527 0.739 - - - - - - - 0.739 - - methylmalonyl-CoA epimerase [Source:NCBI gene;Acc:415385]
79. EF1A EF1A 2378 0.739 0.739 - - - - - - - - -
80. ELL ENSGALG00000033513 6536 0.736 - - - - - - 0.736 - - - elongation factor for RNA polymerase II [Source:NCBI gene;Acc:420124]
81. RPE ENSGALG00000002847 7644 0.736 - - - - - - - 0.736 - - ribulose-5-phosphate-3-epimerase, transcript variant X2
82. TEK ENSGALG00000001840 1365 0.736 - - - - - - - 0.736 - - TEK receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11724]
83. RABIF ENSGALG00000000436 6449 0.735 - - - - - - 0.735 - - - RAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]
84. ANG-1 ANG-1 5239 0.735 0.735 - - - - - - - - -
85. KERA ENSGALG00000011270 4204 0.735 - - - - - - - - - 0.735 keratocan [Source:NCBI gene;Acc:373995]
86. ENSGALG00000026802 ENSGALG00000026802 14688 0.735 - - - - - - - 0.735 - -
87. NECAP2 ENSGALG00000003745 4899 0.734 - - - - - - - 0.734 - - NECAP endocytosis associated 2 [Source:NCBI gene;Acc:419464]
88. SRF ENSGALG00000032029 6983 0.734 - - - - - - 0.734 - - - serum response factor [Source:NCBI gene;Acc:396103]
89. RUNX2 ENSGALG00000040276 499 0.734 - - - - - - - 0.734 - - runt related transcription factor 2 [Source:NCBI gene;Acc:373919]
90. PPFIBP1 ENSGALG00000014106 9864 0.732 - - - - - - 0.732 - - - PPFIA binding protein 1 [Source:NCBI gene;Acc:418219]
91. AAMP ENSGALG00000011445 2528 0.732 - - - - - - - 0.732 - - angio associated migratory cell protein [Source:NCBI gene;Acc:769880]
92. PAX1 ENSGALG00000039040 3339 0.731 - - - - 0.731 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
93. C15orf40 C15orf40 3212 0.731 - - - - - - 0.731 - - -
94. DDX19B ENSGALG00000039967 49600 0.73 - - - - - - 0.730 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
95. MYL2 ENSGALG00000004582 2245 0.73 0.730 - - - - - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
96. ENSGALG00000008755 ENSGALG00000008755 3523 0.729 - - - - - - - 0.729 - -
97. LIMK2 ENSGALG00000006950 1611 0.728 - - - - - - - 0.728 - - LIM domain kinase 2 [Source:NCBI gene;Acc:396010]
98. NTN3 ENSGALG00000029072 1368 0.728 - - - 0.728 - - - - - - netrin 1 [Source:NCBI gene;Acc:396387]
99. NEURL NEURL 221 0.727 - - - - - - - 0.727 - -
100. CPZ ENSGALG00000030209 8822 0.727 - - - 0.727 - - - - - - carboxypeptidase Z [Source:NCBI gene;Acc:395266]

There are 90 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA