Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TOPBP1

Gene Name Gene ID Reads Annotation
TOPBP1 ENSGALG00000034461 3094 DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]











Genes with expression patterns similar to TOPBP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TOPBP1 ENSGALG00000034461 3094 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]
2. IRF6 ENSGALG00000001405 3144 1.783 - - - - - - 0.998 0.785 - - interferon regulatory factor 6 [Source:HGNC Symbol;Acc:HGNC:6121]
3. APP ENSGALG00000015770 9438 1.719 - - - - - - 0.999 - 0.720 - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
4. IMMP2L ENSGALG00000027876 962 1.635 - - - - - - - 0.776 0.859 - inner mitochondrial membrane peptidase subunit 2 [Source:HGNC Symbol;Acc:HGNC:14598]
5. MED7 ENSGALG00000003870 4244 1.486 - - - - 0.761 - - - 0.725 - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
6. CECR1 336 1.418 - - - 0.706 0.712 - - - - - cat eye syndrome chromosome region, candidate 1, transcript variant X2
7. UGCG ENSGALG00000015682 2735 1 - - - - - - 1.000 - - - UDP-glucose ceramide glucosyltransferase [Source:HGNC Symbol;Acc:HGNC:12524]
8. SLBP ENSGALG00000015712 5586 1 - - - - - - 1.000 - - - stem-loop binding protein [Source:NCBI gene;Acc:422902]
9. GATAD2A ENSGALG00000042900 6337 1 - - - - - - 1.000 - - - GATA zinc finger domain containing 2A [Source:NCBI gene;Acc:420109]
10. HSD17B12 ENSGALG00000036787 11748 1 - - - - - - 1.000 - - - hydroxysteroid 17-beta dehydrogenase 12 [Source:HGNC Symbol;Acc:HGNC:18646]
11. GALT ENSGALG00000026195 2002 1 - - - - - - 1.000 - - - galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:HGNC:4135]
12. CKAP2 ENSGALG00000017025 25020 1 - - - - - - 1.000 - - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
13. RBM45 ENSGALG00000009202 6057 1 - - - - - - 1.000 - - - RNA binding motif protein 45 [Source:NCBI gene;Acc:424132]
14. IGDCC3 ENSGALG00000007371 2434 1 - - - - - - 1.000 - - - immunoglobulin superfamily DCC subclass member 3 [Source:HGNC Symbol;Acc:HGNC:9700]
15. DEPDC1B ENSGALG00000014729 5334 0.999 - - - - - - 0.999 - - - DEP domain containing 1B [Source:NCBI gene;Acc:427152]
16. RBM18 ENSGALG00000028167 10372 0.999 - - - - - - 0.999 - - - RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
17. CHKA ENSGALG00000036754 5077 0.999 - - - - - - 0.999 - - - choline kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]
18. SMPD3 ENSGALG00000034950 4335 0.999 - - - - - - 0.999 - - - sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
19. THOC5 ENSGALG00000029223 16069 0.998 - - - - - - 0.998 - - - THO complex 5 [Source:NCBI gene;Acc:417019]
20. RALBP1 ENSGALG00000008405 13780 0.998 - - - - - - 0.998 - - - ralA binding protein 1 [Source:NCBI gene;Acc:429466]
21. PLOD2 ENSGALG00000006783 22789 0.997 - - - - - - 0.997 - - - procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
22. UTP15 ENSGALG00000013510 13122 0.997 - - - - - - 0.997 - - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
23. DDX1 ENSGALG00000016461 15157 0.997 - - - - - - 0.997 - - - DEAD-box helicase 1 [Source:NCBI gene;Acc:395249]
24. DDOST ENSGALG00000010073 18707 0.996 - - - - - - 0.996 - - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
25. C28H19ORF10 C28H19ORF10 16529 0.996 - - - - - - 0.996 - - -
26. YWHAE ENSGALG00000002661 37143 0.996 - - - - - - 0.996 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [Source:NCBI gene;Acc:417554]
27. C1D ENSGALG00000008765 14779 0.996 - - - - - - 0.996 - - - C1D nuclear receptor corepressor [Source:NCBI gene;Acc:421267]
28. HECTD3 ENSGALG00000010217 2513 0.994 - - - - - - 0.994 - - - HECT domain E3 ubiquitin protein ligase 3, transcript variant X2
29. LSM7 ENSGALG00000000408 19112 0.987 - - - - - - 0.987 - - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420055]
30. BZW2 ENSGALG00000010809 29213 0.985 - - - - - - 0.985 - - - basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
31. NUDCD2 ENSGALG00000001726 6303 0.979 - - - - - - 0.979 - - - NudC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30535]
32. NDUFA10 ENSGALG00000004302 41948 0.973 - - - - - - 0.973 - - - NADH:ubiquinone oxidoreductase subunit A10 [Source:NCBI gene;Acc:424032]
33. ASNS ENSGALG00000009748 11822 0.968 - - - - - - 0.968 - - - asparagine synthetase (glutamine-hydrolyzing) [Source:NCBI gene;Acc:420574]
34. RNF7 ENSGALG00000021117 13110 0.954 - - - - - - 0.954 - - - ring finger protein 7 [Source:NCBI gene;Acc:424781]
35. SUGT1 ENSGALG00000016946 22881 0.946 - - - - - - 0.946 - - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
36. IDH1 ENSGALG00000008818 17613 0.923 - - - - - - 0.923 - - - isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:HGNC Symbol;Acc:HGNC:5382]
37. SF3B6 ENSGALG00000016501 28236 0.922 - - - - - - 0.922 - - - splicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
38. CDC42 ENSGALG00000004796 59878 0.898 - - - - - - 0.898 - - - cell division cycle 42 [Source:NCBI gene;Acc:395917]
39. KDELC2 ENSGALG00000017158 479 0.878 - - - - - - - - 0.878 - KDEL motif containing 2 [Source:HGNC Symbol;Acc:HGNC:28496]
40. MYLIP ENSGALG00000012704 983 0.857 - - - - - - - - 0.857 - myosin regulatory light chain interacting protein [Source:NCBI gene;Acc:420841]
41. EIF4EBP1 ENSGALG00000003205 89048 0.849 - - - - - - 0.849 - - - eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
42. KIF5B ENSGALG00000007215 3513 0.847 - - - - - - - 0.847 - - kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
43. GLB1L2 ENSGALG00000001604 4057 0.843 - - - - - - - 0.843 - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
44. LOC776067 ENSGALG00000016808 9164 0.841 - - - - - - - - 0.841 - E3 SUMO-protein ligase RanBP2-like, transcript variant X50
45. GPR180 ENSGALG00000016897 1545 0.84 - - - - - - - - 0.840 - G protein-coupled receptor 180 [Source:HGNC Symbol;Acc:HGNC:28899]
46. CCDC126 ENSGALG00000010976 1892 0.834 - - - - - - - 0.834 - - coiled-coil domain containing 126 [Source:HGNC Symbol;Acc:HGNC:22398]
47. ZNF335 ENSGALG00000041370 4740 0.831 - - - - - - - 0.831 - - zinc finger protein 335 [Source:NCBI gene;Acc:396131]
48. BRSK2 ENSGALG00000006681 158 0.829 - - - - - - - - 0.829 - BR serine/threonine kinase 2 [Source:NCBI gene;Acc:423098]
49. DNAJC25 ENSGALG00000015684 4554 0.825 - - - - - - 0.825 - - - DnaJ heat shock protein family (Hsp40) member C25
50. MBOAT2 ENSGALG00000016412 194 0.817 - - - - - - - - 0.817 - membrane bound O-acyltransferase domain containing 2 [Source:NCBI gene;Acc:421925]
51. FKBP10 ENSGALG00000025764 7668 0.816 - - - - - - - 0.816 - - FK506 binding protein 10 [Source:HGNC Symbol;Acc:HGNC:18169]
52. LMNB1 ENSGALG00000014692 529 0.811 - - - - - - - - 0.811 - lamin B1 [Source:NCBI gene;Acc:396223]
53. ERI1 ENSGALG00000011448 3236 0.809 - - - - - - - 0.809 - - exoribonuclease 1 [Source:NCBI gene;Acc:422629]
54. FAM76A ENSGALG00000040986 2444 0.805 - - - - - - - 0.805 - - family with sequence similarity 76 member A [Source:NCBI gene;Acc:426384]
55. DUSP12 ENSGALG00000007084 1477 0.803 - - - - - - - - 0.803 - dual specificity phosphatase 12 [Source:NCBI gene;Acc:425349]
56. FBXO34 ENSGALG00000032563 656 0.796 - - - - - - - - 0.796 - F-box protein 34 [Source:NCBI gene;Acc:423554]
57. C4H4ORF29 C4H4ORF29 2442 0.795 - - - - - - - 0.795 - -
58. CASC5 CASC5 695 0.795 - - - - - - - - 0.795 -
59. FAM172A ENSGALG00000014661 10565 0.794 - - - - - - - 0.794 - - family with sequence similarity 172 member A [Source:NCBI gene;Acc:427109]
60. SPDL1 ENSGALG00000001942 4403 0.794 - - - - - - - - 0.794 - spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
61. NOTCH2 ENSGALG00000002922 3272 0.79 - - - - - - - 0.790 - - notch 2 [Source:NCBI gene;Acc:374031]
62. ADSS ENSGALG00000010702 7207 0.789 - - - - - - - 0.789 - - adenylosuccinate synthase [Source:NCBI gene;Acc:428579]
63. PPP4R1 ENSGALG00000032092 1135 0.788 - - - - - - - - 0.788 - protein phosphatase 4 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:9320]
64. DIP2C ENSGALG00000006652 1858 0.786 - - - - - - - - 0.786 - disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
65. NFRKB ENSGALG00000001306 4469 0.784 - - - - - - - 0.784 - - nuclear factor related to kappaB binding protein [Source:NCBI gene;Acc:419730]
66. DCLRE1A ENSGALG00000008938 1351 0.782 - - - - - - - - 0.782 - DNA cross-link repair 1A [Source:NCBI gene;Acc:423902]
67. AIFM1 ENSGALG00000004003 10451 0.781 - - - - - - - 0.781 - - apoptosis inducing factor mitochondria associated 1 [Source:NCBI gene;Acc:428688]
68. KIRREL 1906 0.781 - - - - - - - - 0.781 - kin of IRRE like (Drosophila)
69. RAVER2 ENSGALG00000033759 4283 0.78 - - - - - - - - 0.780 - ribonucleoprotein, PTB binding 2 [Source:HGNC Symbol;Acc:HGNC:25577]
70. TJP1 ENSGALG00000042552 3081 0.78 - - - - - - - 0.780 - - tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]
71. ACADL ENSGALG00000002891 8058 0.778 - - - - - - - 0.778 - - acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
72. ABHD17B ENSGALG00000015139 2805 0.778 - - - - - - - - 0.778 - abhydrolase domain containing 17B [Source:NCBI gene;Acc:427252]
73. SLC16A1 ENSGALG00000001717 18566 0.777 - - - - - - 0.777 - - - solute carrier family 16 member 1 [Source:NCBI gene;Acc:419875]
74. TM2D2 ENSGALG00000003356 7088 0.775 - - - - - - - 0.775 - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
75. CHORDC1 ENSGALG00000035461 2439 0.775 - - - - - - - - 0.775 - cysteine and histidine rich domain containing 1 [Source:NCBI gene;Acc:419009]
76. IBTK ENSGALG00000015864 3154 0.768 - - - - - - - - 0.768 - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
77. AMDHD2 ENSGALG00000009234 1730 0.767 - - - - - - - - 0.767 - Gallus gallus amidohydrolase domain containing 2 (AMDHD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001345995]
78. EIF3E ENSGALG00000037067 36561 0.766 - - - - - - - - 0.766 - eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
79. MRPL16 ENSGALG00000029419 8033 0.766 - - - - - - - 0.766 - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
80. SUMO2 ENSGALG00000007971 46283 0.765 - - - - - - 0.765 - - - small ubiquitin-like modifier 2 [Source:NCBI gene;Acc:770125]
81. GFRA1 ENSGALG00000009173 371 0.765 - - - - - - - - 0.765 - GDNF family receptor alpha 1 [Source:NCBI gene;Acc:395994]
82. BLM ENSGALG00000008256 6160 0.764 - - - - - - - 0.764 - - Bloom syndrome RecQ like helicase [Source:NCBI gene;Acc:415577]
83. HDHD1 HDHD1 2928 0.764 - - - - - - - - 0.764 -
84. C1orf198 ENSGALG00000026600 5651 0.762 - - - - - - - 0.762 - - chromosome 1 open reading frame 198 [Source:HGNC Symbol;Acc:HGNC:25900]
85. FTD FTD 3041 0.762 - - - - - - - 0.762 - -
86. DDX49 ENSGALG00000003130 5216 0.761 - - - - - - - 0.761 - - DEAD-box helicase 49 [Source:NCBI gene;Acc:420116]
87. NARFL ENSGALG00000005365 2668 0.761 - - - - - - - - 0.761 - nuclear prelamin A recognition factor like [Source:NCBI gene;Acc:416535]
88. TIPRL ENSGALG00000015246 7875 0.761 - - - - - - - 0.761 - - TOR signaling pathway regulator [Source:HGNC Symbol;Acc:HGNC:30231]
89. PDIA5 ENSGALG00000011689 6913 0.76 - - - - 0.760 - - - - - protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
90. HPS1 ENSGALG00000017419 700 0.758 - - - - - - - 0.758 - - HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 [Source:NCBI gene;Acc:429879]
91. GLRX ENSGALG00000027483 217 0.758 - - - - - - - - 0.758 - glutaredoxin [Source:NCBI gene;Acc:396069]
92. LAMP1 ENSGALG00000037697 247 0.758 - - 0.758 - - - - - - - lysosomal associated membrane protein 1 [Source:NCBI gene;Acc:396220]
93. DPY30 ENSGALG00000010621 6818 0.756 - - - - - - - 0.756 - - dpy-30, histone methyltransferase complex regulatory subunit [Source:NCBI gene;Acc:421482]
94. ATG10 ENSGALG00000027714 1100 0.755 - - - - - - - - 0.755 - autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
95. ARHGAP21 ENSGALG00000007721 3961 0.754 - - - - - - - - 0.754 - Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
96. HNRNPA0 ENSGALG00000006160 54117 0.754 - - - - - - 0.754 - - - heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]
97. APTX ENSGALG00000001954 692 0.753 - - - - 0.753 - - - - - aprataxin [Source:NCBI gene;Acc:395173]
98. CTNNB1 ENSGALG00000037203 56399 0.75 - - - - - - 0.750 - - - catenin beta 1 [Source:NCBI gene;Acc:395964]
99. GAS2L3 ENSGALG00000028373 1452 0.749 - - - - - - - 0.749 - - growth arrest specific 2 like 3 [Source:NCBI gene;Acc:417931]
100. MXD3 ENSGALG00000029109, ENSGALG00000046263 920 0.749 - - - - - - - - 0.749 - MAX dimerization protein 3, transcript variant X2

There are 118 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA