Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TOP3B

Gene Name Gene ID Reads Annotation
TOP3B ENSGALG00000030051 5953 DNA topoisomerase III beta [Source:NCBI gene;Acc:416771]











Genes with expression patterns similar to TOP3B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TOP3B ENSGALG00000030051 5953 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DNA topoisomerase III beta [Source:NCBI gene;Acc:416771]
2. UFD1L 12964 2.305 - - - - - - 0.775 0.803 - 0.727 ubiquitin fusion degradation 1 like (yeast)
3. NCAPG2 ENSGALG00000006525 2319 1.69 - - - - - - 0.944 - - 0.746 non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
4. RNF10 ENSGALG00000036417 8027 1.64 - - - - - - 0.836 0.804 - - ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]
5. OMA1 ENSGALG00000010861 3328 1.63 - - - - - - 0.802 0.828 - - OMA1 zinc metallopeptidase [Source:HGNC Symbol;Acc:HGNC:29661]
6. WDSUB1 ENSGALG00000012574 2038 1.628 - - - - - - 0.894 - - 0.734 WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
7. RHOT1 ENSGALG00000003397 5149 1.627 - - - - - - - 0.838 - 0.789 ras homolog family member T1 [Source:NCBI gene;Acc:417410]
8. HELLS ENSGALG00000005451 7094 1.621 - - - - - - 0.838 - - 0.783 helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
9. CCNE2 ENSGALG00000040794 1229 1.618 - - - - - - 0.876 - - 0.742 cyclin E2 [Source:NCBI gene;Acc:420231]
10. SUV39H2 ENSGALG00000013920 4360 1.615 - - - - - - 0.817 - - 0.798 suppressor of variegation 3-9 homolog 2 [Source:NCBI gene;Acc:426314]
11. PNRC2 ENSGALG00000004122 19228 1.606 - - - - - - - 0.896 - 0.710 proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
12. SNRNP48 ENSGALG00000013005 1468 1.605 - - - - - - 0.835 - - 0.770 small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
13. C14orf80 C14orf80 1921 1.601 - - - - - - 0.866 - - 0.735
14. MB21D1 2460 1.59 - - - - - - - 0.845 - 0.745 Mab-21 domain containing 1
15. FEN1 ENSGALG00000033781 16551 1.587 - - - - - - 0.775 0.812 - - flap structure-specific endonuclease 1 [Source:NCBI gene;Acc:769677]
16. LFNG ENSGALG00000038515 5178 1.586 - - - - - - 0.866 - - 0.720 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
17. MESDC1 1013 1.565 - - - - - - 0.863 0.702 - - mesoderm development candidate 1
18. BRD1 ENSGALG00000029379 6047 1.52 - - - - - - 0.781 - - 0.739 bromodomain containing 1 [Source:NCBI gene;Acc:417731]
19. ZFR ENSGALG00000003235 8466 1.474 - - - - - - 0.761 - - 0.713 zinc finger RNA binding protein, transcript variant X3
20. CETN1 ENSGALG00000026741 7243 1.454 - - - - - - 0.711 - - 0.743 centrin 1 [Source:NCBI gene;Acc:422668]
21. MPRIP ENSGALG00000004798 6700 1.45 - - - - - - 0.708 - - 0.742 myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
22. DPYSL3 ENSGALG00000007582 7743 0.922 - - - - - - 0.922 - - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
23. VPS29 ENSGALG00000004529 22509 0.921 - - - - - - 0.921 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
24. CDC42SE2 ENSGALG00000027258 4725 0.913 - - - - - - 0.913 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
25. PAPD7 ENSGALG00000013061 2031 0.91 - - - - - - 0.910 - - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
26. ZFYVE19 ENSGALG00000008460 2750 0.91 - - - - - - 0.910 - - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
27. BMI1 ENSGALG00000041267 6618 0.909 - - - - - - 0.909 - - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
28. PARL ENSGALG00000002315 15943 0.909 - - - - - - 0.909 - - - presenilin associated rhomboid like
29. SPCS2 ENSGALG00000019036 9496 0.909 - - - - - - 0.909 - - - signal peptidase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:28962]
30. CANX ENSGALG00000032148 11297 0.908 - - - - - - 0.908 - - - calnexin [Source:NCBI gene;Acc:416288]
31. B4GALT3 ENSGALG00000022891 2825 0.908 - - - - - - 0.908 - - - beta-1,4-galactosyltransferase 3
32. SCAF4 ENSGALG00000033965 2027 0.908 - - - - - - 0.908 - - - SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
33. DBNDD2 ENSGALG00000003921 8301 0.907 - - - - - - 0.907 - - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
34. OCRL ENSGALG00000003920 1812 0.905 - - - - - - 0.905 - - - OCRL, inositol polyphosphate-5-phosphatase [Source:HGNC Symbol;Acc:HGNC:8108]
35. MRPL10 ENSGALG00000014387 12386 0.903 - - - - - - 0.903 - - - mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
36. CLDND1 ENSGALG00000039538 5048 0.901 - - - - - - 0.901 - - - claudin domain containing 1 [Source:NCBI gene;Acc:418357]
37. SQLE ENSGALG00000036915 4172 0.899 - - - - - - 0.899 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
38. MBTPS1 ENSGALG00000003293 4843 0.899 - - - - - - 0.899 - - - membrane bound transcription factor peptidase, site 1 [Source:HGNC Symbol;Acc:HGNC:15456]
39. FAM57A ENSGALG00000004820 1492 0.897 - - - - - - 0.897 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
40. GGA.8379 GGA.8379 4419 0.896 - - - - - - 0.896 - - -
41. ENSGALG00000028164 ENSGALG00000028164 3325 0.893 - - - - - - 0.893 - - -
42. MORC3 ENSGALG00000036556 2976 0.891 - - - - - - 0.891 - - - MORC family CW-type zinc finger 3 [Source:NCBI gene;Acc:418513]
43. GPN3 ENSGALG00000003807 6320 0.89 - - - - - - 0.890 - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
44. COPS8 ENSGALG00000033385 10166 0.89 - - - - - - 0.890 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
45. MGLL ENSGALG00000032736 612 0.89 - - - - - - 0.890 - - - monoglyceride lipase [Source:NCBI gene;Acc:416024]
46. FTSJ2 FTSJ2 2951 0.889 - - - - - - 0.889 - - -
47. ALDH18A1 ENSGALG00000034655 3038 0.888 - - - - - - 0.888 - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
48. ARL2BP ENSGALG00000034102 2700 0.888 - - - - - - 0.888 - - - ADP ribosylation factor like GTPase 2 binding protein [Source:NCBI gene;Acc:426495]
49. INTS6 ENSGALG00000017018 3083 0.888 - - - - - - 0.888 - - - integrator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14879]
50. FAM193A ENSGALG00000015667 3075 0.887 - - - - - - 0.887 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
51. DNAJC16 ENSGALG00000032832 750 0.886 - - - - - - 0.886 - - - DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
52. SGSM3 ENSGALG00000012033 1839 0.886 - - - - - - 0.886 - - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
53. NT5C2 ENSGALG00000008179 1760 0.882 - - - - - - 0.882 - - - 5'-nucleotidase, cytosolic II [Source:NCBI gene;Acc:423871]
54. ENSGALG00000013233 ENSGALG00000013233 3265 0.882 - - - - - - 0.882 - - -
55. TUBA4A ENSGALG00000000433 1367 0.881 - - - - - - 0.881 - - - tubulin alpha 4a
56. MST1 ENSGALG00000002722 994 0.88 - - - - - - 0.880 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
57. WIPI1 ENSGALG00000004215 3359 0.879 - - - - - - 0.879 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
58. GAS6 ENSGALG00000016820 481 0.879 - - - - - - 0.879 - - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
59. BPHL ENSGALG00000029659 501 0.879 - - - - - - 0.879 - - - biphenyl hydrolase like [Source:HGNC Symbol;Acc:HGNC:1094]
60. SDK2 ENSGALG00000031895 2682 0.879 - - - - - - 0.879 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
61. IK ENSGALG00000037172 12100 0.878 - - - - - - 0.878 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
62. SELM SELM 6366 0.878 - - - - - - 0.878 - - -
63. ABHD17C ENSGALG00000006420 2220 0.878 - - - - - - 0.878 - - - abhydrolase domain containing 17C [Source:NCBI gene;Acc:415479]
64. NSMCE4A ENSGALG00000009504 1302 0.877 - - - - - - 0.877 - - - NSE4 homolog A, SMC5-SMC6 complex component
65. MCEE ENSGALG00000003913 1527 0.877 - - - - - - 0.877 - - - methylmalonyl-CoA epimerase [Source:NCBI gene;Acc:415385]
66. CCNL1 ENSGALG00000009699 1033 0.877 - - - - - - 0.877 - - - cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
67. ATM ENSGALG00000017159 893 0.876 - - - - - - 0.876 - - - ATM serine/threonine kinase [Source:NCBI gene;Acc:395401]
68. ASB6 ENSGALG00000004378 1080 0.876 - - - - - - 0.876 - - - ankyrin repeat and SOCS box containing 6 [Source:NCBI gene;Acc:417194]
69. CEP290 ENSGALG00000011177 1559 0.875 - - - - - - 0.875 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
70. SPG11 ENSGALG00000008180 1890 0.875 - - - - - - 0.875 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
71. NUP205 ENSGALG00000011662 4157 0.875 - - - - - - 0.875 - - - nucleoporin 205
72. SPAG9 ENSGALG00000034001 2314 0.874 - - - - - - 0.874 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
73. PRPF40A ENSGALG00000012526 7724 0.873 - - - - - - 0.873 - - - pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
74. NIN ENSGALG00000012361 2284 0.873 - - - - - - 0.873 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
75. UCK2 ENSGALG00000003510 2512 0.873 - - - - - - 0.873 - - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
76. HESX1 ENSGALG00000005506 203 0.873 - - - - - - 0.873 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
77. NEK4 ENSGALG00000041428 4473 0.871 - - - - - - 0.871 - - - NIMA related kinase 4 [Source:HGNC Symbol;Acc:HGNC:11399]
78. TAF8 ENSGALG00000003498 2071 0.87 - - - - - - 0.870 - - - TATA-box binding protein associated factor 8 [Source:NCBI gene;Acc:419929]
79. ERMP1 ENSGALG00000000438 1136 0.868 - - - - - - 0.868 - - - endoplasmic reticulum metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:23703]
80. PLEKHA3 ENSGALG00000009135 1700 0.867 - - - - - - 0.867 - - - pleckstrin homology domain containing A3 [Source:NCBI gene;Acc:424128]
81. SMOC1 ENSGALG00000009415 2403 0.867 - - - - - - 0.867 - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
82. DNAJC12 ENSGALG00000002769 1418 0.867 - - - - - - 0.867 - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
83. RBM34 ENSGALG00000029915 5618 0.866 - - - - - - 0.866 - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
84. PTN ENSGALG00000040493 864 0.866 - - - - - - 0.866 - - - pleiotrophin [Source:NCBI gene;Acc:418125]
85. PGAP2 ENSGALG00000027762 2583 0.866 - - - - - - 0.866 - - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
86. PIK3R3 ENSGALG00000010335 374 0.866 - - - - - - 0.866 - - - phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
87. NSRP1 ENSGALG00000004186 1683 0.866 - - - - - - 0.866 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
88. XPO7 ENSGALG00000001838 1875 0.865 - - - - - - 0.865 - - - exportin 7 [Source:NCBI gene;Acc:426925]
89. ECHDC3 ENSGALG00000006690 1299 0.864 - - - - - - 0.864 - - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
90. ARPP21 ENSGALG00000043240 2403 0.864 - - - - - - 0.864 - - - cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]
91. ENTPD8L ENSGALG00000008936 731 0.864 - - - - - - 0.864 - - - ectonucleoside triphosphate diphosphohydrolase 8-like
92. RASGEF1B 2014 0.863 - - - - - - 0.863 - - - RasGEF domain family member 1B, transcript variant X8
93. CCDC101 CCDC101 9111 0.863 - - - - - - 0.863 - - -
94. ENSGALG00000016099 ENSGALG00000016099 138 0.862 - - - - - - 0.862 - - -
95. RFT1 ENSGALG00000001945 2446 0.861 - - - - - - 0.861 - - - RFT1 homolog [Source:NCBI gene;Acc:770487]
96. RPIA ENSGALG00000015960 2784 0.861 - - - - - - 0.861 - - - ribose 5-phosphate isomerase A [Source:NCBI gene;Acc:422931]
97. ENSGALG00000003619 ENSGALG00000003619 58 0.861 - - - - - - 0.861 - - -
98. FAM183A 242 0.861 - - - - - - 0.861 - - - family with sequence similarity 183 member A, transcript variant 2
99. ITSN1 ENSGALG00000036677 5727 0.861 - - - - - - 0.861 - - - intersectin 1 [Source:HGNC Symbol;Acc:HGNC:6183]
100. TM2D3 ENSGALG00000026271 2566 0.86 - - - - - - 0.860 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]

There are 473 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA