Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TIMP3

Gene Name Gene ID Reads Annotation
TIMP3 ENSGALG00000028627 8706 TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]











Genes with expression patterns similar to TIMP3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TIMP3 ENSGALG00000028627 8706 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
2. C9H2ORF82 ENSGALG00000040264 4201 6.096 - - 0.902 0.903 0.778 0.966 - 0.932 0.880 0.735 chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
3. COL8A1 ENSGALG00000015253 2505 6.005 - - 0.915 0.904 0.790 0.920 0.853 0.892 0.731 - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
4. COL9A3 ENSGALG00000005628 2842 5.894 - - 0.886 0.875 0.725 0.954 0.807 0.936 0.711 - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
5. OSF-2 OSF-2 10433 5.776 - - 0.832 0.754 0.804 0.816 0.850 0.895 0.825 -
6. T ENSGALG00000011489 2619 5.189 - - 0.892 0.908 0.803 0.964 0.784 - 0.838 - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
7. OCA2 ENSGALG00000016740 421 4.991 - - - 0.809 - 0.932 0.809 0.925 0.791 0.725 OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
8. COL9A2 ENSGALG00000027526 4685 4.94 - - 0.860 0.831 0.752 0.823 0.747 0.927 - - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
9. EMILIN3 ENSGALG00000030012 6200 4.935 - - 0.834 0.830 0.750 0.948 0.789 - 0.784 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
10. RAB38 ENSGALG00000028018 1046 4.352 - - 0.817 0.915 0.795 0.885 - 0.940 - - RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
11. SCARA3 ENSGALG00000026651 2559 4.299 - - 0.883 0.812 - 0.923 - 0.839 0.842 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
12. SPON2 ENSGALG00000038433 1240 4.283 - - - 0.800 - 0.929 - 0.905 0.913 0.736 spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
13. SAMD3 ENSGALG00000032409 459 4.26 - - - 0.896 0.707 0.897 0.803 0.957 - - sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
14. COL9A1 ENSGALG00000015970 3788 4.243 - - 0.906 0.857 0.772 0.893 0.815 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
15. LECT1 LECT1 12694 4.083 - - 0.786 0.784 0.735 - 0.836 0.942 - -
16. SST ENSGALG00000007361 1383 4.006 - - 0.848 0.749 0.775 - - 0.897 0.737 - somatostatin [Source:NCBI gene;Acc:396279]
17. ZNF385B ENSGALG00000009012 290 3.96 - - 0.832 0.730 - 0.878 0.770 0.750 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
18. WWP2 ENSGALG00000000699 5040 3.906 - - 0.803 - - 0.733 0.748 0.781 0.841 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
19. TAC1 ENSGALG00000009737 2211 3.599 - - 0.835 0.924 - 0.966 - 0.874 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
20. ACAN ENSGALG00000006725 184 3.52 - - 0.810 - - 0.974 - 0.866 0.870 - aggrecan [Source:NCBI gene;Acc:395798]
21. SHH ENSGALG00000006379 1943 3.142 - - 0.847 - - - 0.758 0.729 0.808 - sonic hedgehog [Source:NCBI gene;Acc:395615]
22. SPON1 ENSGALG00000038775 16503 3.081 - - 0.748 - 0.739 - 0.839 - 0.755 - spondin 1 [Source:NCBI gene;Acc:395657]
23. CCK ENSGALG00000029788 213 2.344 - - - - - 0.876 - 0.701 0.767 - cholecystokinin [Source:NCBI gene;Acc:414884]
24. SCARA5 ENSGALG00000016580 712 2.278 - - - - - 0.826 0.726 0.726 - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
25. B3GNT7 ENSGALG00000007701 929 1.79 - - - - - 0.956 - - 0.834 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
26. PCDH17 ENSGALG00000016941 1006 1.755 - - - - - 0.889 - 0.866 - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
27. NPY7R ENSGALG00000021303 215 1.685 - - - 0.845 - 0.840 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
28. LRRTM1 ENSGALG00000015967 85 1.651 - - - - - 0.915 - 0.736 - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
29. SOX9 ENSGALG00000004386 14802 1.646 - - 0.816 - - - 0.830 - - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
30. IYD ENSGALG00000012392 315 1.628 - - - 0.713 - - - - 0.915 - iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
31. SCIN ENSGALG00000010770 883 1.625 - - 0.825 - - 0.800 - - - - scinderin [Source:NCBI gene;Acc:420588]
32. CYP1B1 ENSGALG00000025822 3143 1.62 - - 0.814 - - - - - 0.806 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
33. SLC24A4 ENSGALG00000010793 238 1.617 - - - - - - - 0.814 0.803 - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
34. MYOG ENSGALG00000000172 460 1.579 - - - - - - - - 0.864 0.715 myogenin [Source:NCBI gene;Acc:374004]
35. SERPINE2 ENSGALG00000005135 16108 1.574 - - 0.761 0.813 - - - - - - serpin family E member 2 [Source:NCBI gene;Acc:424805]
36. SLC6A1 ENSGALG00000004921 118 1.572 - - - - - - - 0.761 - 0.811 solute carrier family 6 member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
37. COL11A1 ENSGALG00000005180 244 1.551 - - - 0.793 - - - - 0.758 - collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
38. UPK3A ENSGALG00000014227 7 1.549 - - - - - 0.813 - 0.736 - - uroplakin 3A [Source:HGNC Symbol;Acc:HGNC:12580]
39. PLOD2 ENSGALG00000006783 22789 1.521 - - - - 0.763 - - - - 0.758 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
40. EPB41L3 ENSGALG00000038678 5863 1.509 - - 0.766 0.743 - - - - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
41. ENSGALG00000010113 ENSGALG00000010113 508 1.505 - - 0.749 - - - 0.756 - - -
42. SLC15A5 ENSGALG00000013097 213 1.502 - - 0.708 - - 0.794 - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
43. TF ENSGALG00000006453 14007 1.495 - - 0.790 - - 0.705 - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
44. SMOC1 ENSGALG00000009415 2403 1.489 - - 0.744 - - - - - 0.745 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
45. HHIP ENSGALG00000009948 1536 1.481 - - 0.757 - - - 0.724 - - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
46. ZNF536 ENSGALG00000035602 1127 1.471 - - - 0.723 - - - - 0.748 - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
47. SNAPC1 ENSGALG00000011868 65 1.468 - - - - - 0.732 - 0.736 - - small nuclear RNA activating complex polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:11134]
48. WFDC1 ENSGALG00000005503 6152 1.449 - - - - - 0.749 - 0.700 - - WAP four-disulfide core domain 1 [Source:NCBI gene;Acc:395238]
49. AIF1L ENSGALG00000029834 13866 1.409 - - 0.707 - - - 0.702 - - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
50. CCL17 ENSGALG00000024466 10 0.974 - - - - - 0.974 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
51. PIGM ENSGALG00000010768 41 0.951 - - - - - - - 0.951 - - phosphatidylinositol glycan anchor biosynthesis class M [Source:NCBI gene;Acc:428583]
52. RASGRF2 ENSGALG00000015598 30 0.951 - - - - - - - 0.951 - - Ras protein specific guanine nucleotide releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
53. RRAD ENSGALG00000005140 183 0.948 - - - - - 0.948 - - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
54. FNDC1 ENSGALG00000011663 1040 0.946 - - - - - - - 0.946 - - fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
55. APOD ENSGALG00000006995 2 0.928 - - - - - 0.928 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
56. KCNG1 ENSGALG00000007980 26 0.928 - - - - - 0.928 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
57. HOXA10 ENSGALG00000026631 1 0.928 - - - - - 0.928 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
58. RGS18 ENSGALG00000021143 120 0.914 - - - - - 0.914 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
59. GPR158 ENSGALG00000007667 111 0.913 - - - - - - - 0.913 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
60. ENSGALG00000008822 ENSGALG00000008822 221 0.889 - - - - - 0.889 - - - -
61. NCBP2 ENSGALG00000006843 938 0.887 - - - - - - - 0.887 - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
62. MYL1 ENSGALG00000002907 1300 0.879 - - - - - 0.879 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
63. CHRDL1 ENSGALG00000008072 711 0.873 - - - - - 0.873 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
64. GNOT1 GNOT1 22 0.87 - - - - - - - 0.870 - -
65. GEMIN8 ENSGALG00000016574 18 0.869 - - - - - - - 0.869 - - gem nuclear organelle associated protein 8 [Source:HGNC Symbol;Acc:HGNC:26044]
66. POMC ENSGALG00000016600 99 0.866 - - - - - - - 0.866 - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
67. TXNRD1 ENSGALG00000035345 4784 0.861 - - - 0.861 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
68. DCLRE1B ENSGALG00000028626 48 0.858 - - - - - - - 0.858 - - DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
69. PTH3R PTH3R 214 0.854 - - - - - 0.854 - - - -
70. CDH4 ENSGALG00000005102 3446 0.854 - - - - - - - - 0.854 - cadherin 4 [Source:NCBI gene;Acc:419222]
71. LEFTY2 ENSGALG00000009256 1 0.854 - - - - - 0.854 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
72. LIMCH1 ENSGALG00000014258 1987 0.836 - - - - - - - - 0.836 - LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
73. VPAC2 VPAC2 45 0.828 - - - - - 0.828 - - - -
74. PLPPR5 ENSGALG00000005470 277 0.825 - - - - - 0.825 - - - - phospholipid phosphatase related 5 [Source:HGNC Symbol;Acc:HGNC:31703]
75. TNFIP6 TNFIP6 3024 0.824 - - - - - - 0.824 - - -
76. WIF1 ENSGALG00000039209 863 0.822 - - - - - 0.822 - - - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
77. PCDH12 ENSGALG00000002544 36 0.821 - - - - - - - 0.821 - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
78. PAX1 ENSGALG00000039040 3339 0.814 - - 0.814 - - - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
79. FGF23 ENSGALG00000027791 9 0.813 - - - - - 0.813 - - - - fibroblast growth factor 23 [Source:HGNC Symbol;Acc:HGNC:3680]
80. LEPR ENSGALG00000011058 4 0.813 - - - - - 0.813 - - - - leptin receptor [Source:NCBI gene;Acc:374223]
81. NLRC3 ENSGALG00000033278 11 0.813 - - - - - 0.813 - - - - NLR family CARD domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29889]
82. HHATL ENSGALG00000005297 0 0.813 - - - - - 0.813 - - - - hedgehog acyltransferase-like [Source:NCBI gene;Acc:420391]
83. NFIL3 ENSGALG00000015209 15 0.813 - - - - - 0.813 - - - - nuclear factor, interleukin 3 regulated [Source:NCBI gene;Acc:395326]
84. KIAA1841 ENSGALG00000007825 22 0.813 - - - - - 0.813 - - - - KIAA1841 [Source:NCBI gene;Acc:421196]
85. ARHGAP44 ENSGALG00000001311 0 0.813 - - - - - 0.813 - - - - Rho GTPase activating protein 44, transcript variant X4
86. PKD1 ENSGALG00000005714 0 0.813 - - - - - 0.813 - - - - polycystin 1, transient receptor potential channel interacting [Source:HGNC Symbol;Acc:HGNC:9008]
87. SLC13A5 ENSGALG00000005995 23 0.813 - - - - - 0.813 - - - - solute carrier family 13 member 5 [Source:HGNC Symbol;Acc:HGNC:23089]
88. DD1 DD1 4 0.813 - - - - - 0.813 - - - -
89. GPR174 ENSGALG00000004111 16 0.813 - - - - - 0.813 - - - - G protein-coupled receptor 174 [Source:NCBI gene;Acc:422146]
90. ENSGALG00000004753 ENSGALG00000004753 63 0.813 - - - - - 0.813 - - - -
91. U5 U5 1 0.813 - - - - - 0.813 - - - -
92. NRAP ENSGALG00000008914 24 0.813 - - - - - 0.813 - - - - nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
93. PABPC1L ENSGALG00000004123 2 0.813 - - - - - 0.813 - - - - poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
94. UNC13B ENSGALG00000002165 3 0.813 - - - - - 0.813 - - - - unc-13 homolog B [Source:HGNC Symbol;Acc:HGNC:12566]
95. CALR3 ENSGALG00000003914 8 0.813 - - - - - 0.813 - - - - calreticulin 3 [Source:HGNC Symbol;Acc:HGNC:20407]
96. ENSGALG00000025736 ENSGALG00000025736 3 0.813 - - - - - 0.813 - - - -
97. PLEKHG7 ENSGALG00000011277 3 0.813 - - - - - 0.813 - - - - pleckstrin homology and RhoGEF domain containing G7 [Source:HGNC Symbol;Acc:HGNC:33829]
98. IL8 ENSGALG00000026098 16 0.813 - - - - - 0.813 - - - - interleukin 8-like 2 [Source:NCBI gene;Acc:396495]
99. AGO2 ENSGALG00000040957 25 0.813 - - - - - 0.813 - - - - argonaute 2, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3263]
100. NEGR1 ENSGALG00000011350 6 0.813 - - - - - 0.813 - - - - neuronal growth regulator 1 [Source:NCBI gene;Acc:395662]

There are 153 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA