Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TDP1

Gene Name Gene ID Reads Annotation
TDP1 ENSGALG00000010669 57 tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:18884]











Genes with expression patterns similar to TDP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TDP1 ENSGALG00000010669 57 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:18884]
2. STAT1 ENSGALG00000007651 24 1.845 - - - - - - 1.000 0.845 - - signal transducer and activator of transcription 1 [Source:NCBI gene;Acc:424044]
3. SMG7 ENSGALG00000004667 707 1.564 - - - - - - 0.832 - - 0.732 SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
4. ST6GALNAC3 ENSGALG00000009027 17 1.534 - - - - 0.802 - - - - 0.732 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
5. ENSGALG00000012250 ENSGALG00000012250 581 1.48 - - - - 0.717 - - - - 0.763
6. ZFAND3 ENSGALG00000010134 34 1.422 - - - - 0.712 - - - - 0.710 zinc finger AN1-type containing 3 [Source:HGNC Symbol;Acc:HGNC:18019]
7. ENSGALG00000027059 ENSGALG00000027059 7 1 - - - - - - 1.000 - - -
8. ENSGALG00000019640 ENSGALG00000019640 2 1 - - - - - - 1.000 - - -
9. CD180 ENSGALG00000023411 14 1 - - - - - - 1.000 - - - CD180 molecule [Source:HGNC Symbol;Acc:HGNC:6726]
10. RPP14 570 1 - - - - - - 1.000 - - - ribonuclease P/MRP subunit p14
11. CHRNA1 ENSGALG00000009301 2 1 - - - - - - 1.000 - - - cholinergic receptor nicotinic alpha 1 subunit [Source:NCBI gene;Acc:395608]
12. FSIP1 ENSGALG00000009624 40 1 - - - - - - 1.000 - - - fibrous sheath interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:21674]
13. GRIN2A ENSGALG00000007278 17 1 - - - - - - 1.000 - - - glutamate ionotropic receptor NMDA type subunit 2A [Source:HGNC Symbol;Acc:HGNC:4585]
14. SLC38A4 ENSGALG00000009730 15 1 - - - - - - 1.000 - - - solute carrier family 38 member 4 [Source:NCBI gene;Acc:417809]
15. SLC25A25 ENSGALG00000005095 4 1 - - - - - - 1.000 - - - solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
16. FADS1L2 ENSGALG00000020486 1 1 - - - - - - 1.000 - - - fatty acid desaturase 1-like 2, transcript variant X2
17. RAB3C ENSGALG00000014726 10 1 - - - - - - 1.000 - - - RAB3C, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30269]
18. ACPP ENSGALG00000043415 4 1 - - - - - - 1.000 - - - acid phosphatase, prostate, transcript variant X2
19. CREB3L3 ENSGALG00000001252 1 1 - - - - - - 1.000 - - - cAMP responsive element binding protein 3 like 3 [Source:HGNC Symbol;Acc:HGNC:18855]
20. HECW2 ENSGALG00000007944 143 1 - - - - - - 1.000 - - - HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:29853]
21. ATP11C ENSGALG00000006623 163 1 - - - - - - 1.000 - - - ATPase phospholipid transporting 11C [Source:HGNC Symbol;Acc:HGNC:13554]
22. PRUNE2 ENSGALG00000015167 37 1 - - - - - - 1.000 - - - prune homolog 2, transcript variant X5
23. ENSGALG00000023180 ENSGALG00000023180 83 1 - - - - - - - 1.000 - -
24. LOC418298 ENSGALG00000014680 23 1 - - - - - - 1.000 - - - solute carrier family 25 member 33-like
25. CGA ENSGALG00000015824 1 1 - - - - - - 1.000 - - - glycoprotein hormones, alpha polypeptide [Source:NCBI gene;Acc:421829]
26. ENSGALG00000026112 ENSGALG00000026112 13 1 - - - - - - 1.000 - - -
27. KCNT2 ENSGALG00000041680 36 1 - - - - - - 1.000 - - - potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
28. ENSGALG00000003611 ENSGALG00000003611 22 1 - - - - - - 1.000 - - -
29. ENSGALG00000023846 ENSGALG00000023846 3 1 - - - - - - 1.000 - - -
30. ZHX2 ENSGALG00000043827 13 1 - - - - - - 1.000 - - - zinc fingers and homeoboxes 2 [Source:HGNC Symbol;Acc:HGNC:18513]
31. ENSGALG00000017322 ENSGALG00000017322 1 1 - - - - - - 1.000 - - -
32. FLVCR1 ENSGALG00000009807 21 1 - - - - - - 1.000 - - - feline leukemia virus subgroup C cellular receptor 1 [Source:HGNC Symbol;Acc:HGNC:24682]
33. GFAP ENSGALG00000000909 21 1 - - - - - - 1.000 - - - glial fibrillary acidic protein [Source:HGNC Symbol;Acc:HGNC:4235]
34. ENSGALG00000019053 ENSGALG00000019053 8 1 - - - - - - 1.000 - - -
35. CBX2 ENSGALG00000023338 10 1 - - - - - - 1.000 - - - chromobox 2 [Source:HGNC Symbol;Acc:HGNC:1552]
36. KCNA2 ENSGALG00000000442 1 1 - - - - - - 1.000 - - - potassium voltage-gated channel subfamily A member 2 [Source:NCBI gene;Acc:395117]
37. DENND2A ENSGALG00000012857 350 1 - - - - - - 1.000 - - - DENN domain containing 2A [Source:HGNC Symbol;Acc:HGNC:22212]
38. WASF3 ENSGALG00000017103 50 1 - - - - - - 1.000 - - - WAS protein family member 3 [Source:HGNC Symbol;Acc:HGNC:12734]
39. TEKT4 ENSGALG00000005247 20 0.997 - - - - - - - 0.997 - - tektin 4 [Source:HGNC Symbol;Acc:HGNC:31012]
40. GABBR2 ENSGALG00000013200 176 0.997 - - - - - - - 0.997 - - gamma-aminobutyric acid type B receptor subunit 2 [Source:HGNC Symbol;Acc:HGNC:4507]
41. ZFYVE26 ENSGALG00000028762 18 0.997 - - - - - - - 0.997 - - zinc finger FYVE-type containing 26 [Source:HGNC Symbol;Acc:HGNC:20761]
42. MYOD1 ENSGALG00000006216 568 0.935 - - - - - - - 0.935 - - myogenic differentiation 1 [Source:NCBI gene;Acc:374048]
43. KIAA1211 ENSGALG00000013771 135 0.918 - - - - - - - 0.918 - - KIAA1211 [Source:HGNC Symbol;Acc:HGNC:29219]
44. TMEM255A ENSGALG00000008604 7 0.915 - - - - - - - 0.915 - - transmembrane protein 255A [Source:HGNC Symbol;Acc:HGNC:26086]
45. NTRK1 ENSGALG00000019019 17 0.915 - - - - - - - 0.915 - - neurotrophic receptor tyrosine kinase 1 [Source:NCBI gene;Acc:396337]
46. IL13RA1 ENSGALG00000044480 24 0.915 - - - - - - - 0.915 - - interleukin 13 receptor subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:5974]
47. WDR16 WDR16 22 0.915 - - - - - - - 0.915 - -
48. TRIM14 ENSGALG00000015315 22 0.915 - - - - - - - 0.915 - - tripartite motif containing 14 [Source:NCBI gene;Acc:427282]
49. RELN ENSGALG00000008193 43 0.915 - - - - - - - 0.915 - - reelin [Source:NCBI gene;Acc:427850]
50. ARSA ENSGALG00000035824 299 0.914 - - - - - - - 0.914 - - arylsulfatase A [Source:HGNC Symbol;Acc:HGNC:713]
51. RPS6KA6 ENSGALG00000007097 94 0.913 - - - - - - - 0.913 - - ribosomal protein S6 kinase A6 [Source:HGNC Symbol;Acc:HGNC:10435]
52. FGA ENSGALG00000009266 291 0.913 - - - - - - - 0.913 - - fibrinogen alpha chain [Source:NCBI gene;Acc:396307]
53. SNX25 ENSGALG00000010610 31 0.913 - - - - - - - 0.913 - - sorting nexin 25 [Source:HGNC Symbol;Acc:HGNC:21883]
54. MCM9 ENSGALG00000014883 8 0.913 - - - - - - - 0.913 - - minichromosome maintenance 9 homologous recombination repair factor [Source:NCBI gene;Acc:100857742]
55. TTLL2 ENSGALG00000011344 14 0.913 - - - - - - - 0.913 - - tubulin tyrosine ligase like 2, transcript variant X1
56. PARP12 ENSGALG00000046187 10 0.913 - - - - - - - 0.913 - - poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]
57. MEST ENSGALG00000008111 1 0.913 - - - - - - - 0.913 - - mesoderm specific transcript [Source:HGNC Symbol;Acc:HGNC:7028]
58. STARD13 ENSGALG00000017065 18 0.913 - - - - - - - 0.913 - - StAR related lipid transfer domain containing 13, transcript variant X3
59. BOK ENSGALG00000005772 117 0.913 - - - - - - - 0.913 - - BOK, BCL2 family apoptosis regulator [Source:NCBI gene;Acc:395445]
60. ALDH6A1 ENSGALG00000010211 29 0.913 - - - - - - - 0.913 - - aldehyde dehydrogenase 6 family member A1 [Source:HGNC Symbol;Acc:HGNC:7179]
61. AK8 ENSGALG00000040923 10 0.913 - - - - - - - 0.913 - - adenylate kinase 8, transcript variant X1
62. SMAP2 ENSGALG00000029244 498 0.913 - - - - - - - 0.913 - - small ArfGAP2 [Source:NCBI gene;Acc:419641]
63. AK7 ENSGALG00000011093 9 0.913 - - - - - - - 0.913 - - adenylate kinase 7 [Source:HGNC Symbol;Acc:HGNC:20091]
64. SEC16A ENSGALG00000002364 19 0.913 - - - - - - - 0.913 - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X1
65. PALM ENSGALG00000026055 8 0.913 - - - - - - - 0.913 - - paralemmin [Source:NCBI gene;Acc:101750199]
66. TFRC 31 0.913 - - - - - - - 0.913 - - transferrin receptor, transcript variant X1
67. FBXO16 7 0.913 - - - - - - - 0.913 - - F-box protein 16, transcript variant X1
68. TROJANZ ENSGALG00000027747 37 0.911 - - - - - - - 0.911 - - Gallus gallus phosphotyrosine phosphatase kappa-like-Z (TROJANZ), mRNA. [Source:RefSeq mRNA;Acc:NM_001318459]
69. PACSIN1 ENSGALG00000002802 6 0.911 - - - - - - - 0.911 - - protein kinase C and casein kinase substrate in neurons 1 [Source:HGNC Symbol;Acc:HGNC:8570]
70. GNPNAT1 ENSGALG00000012414 32 0.907 - - - - - - 0.907 - - - glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:19980]
71. MYO1E ENSGALG00000004150 40 0.903 - - - - - - - 0.903 - - myosin IE [Source:HGNC Symbol;Acc:HGNC:7599]
72. ASB12 ENSGALG00000007594 185 0.901 - - - - - - - 0.901 - - ankyrin repeat and SOCS box containing 12 [Source:NCBI gene;Acc:422313]
73. RASD1 ENSGALG00000004860 133 0.892 - - - - - - 0.892 - - - ras related dexamethasone induced 1 [Source:NCBI gene;Acc:416507]
74. GLRB ENSGALG00000009395 9 0.881 - - - - - - 0.881 - - - glycine receptor beta [Source:HGNC Symbol;Acc:HGNC:4329]
75. FAM105B 56 0.873 - - - - - - 0.873 - - - family with sequence similarity 105, member B, transcript variant X18
76. ZNF770 ENSGALG00000009817 27 0.868 - - - - 0.868 - - - - - zinc finger protein 770 [Source:HGNC Symbol;Acc:HGNC:26061]
77. ARMC2 ENSGALG00000015289 18 0.859 - - - - - - - 0.859 - - armadillo repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:23045]
78. SLC35B2 ENSGALG00000010174 3 0.859 - - - - - - - 0.859 - - solute carrier family 35 member B2 [Source:HGNC Symbol;Acc:HGNC:16872]
79. CA12 ENSGALG00000003456 62 0.858 - - - - - - - 0.858 - - carbonic anhydrase 12 [Source:HGNC Symbol;Acc:HGNC:1371]
80. RDH11 ENSGALG00000009538 110 0.854 - - - - - - - 0.854 - - retinol dehydrogenase 11 [Source:HGNC Symbol;Acc:HGNC:17964]
81. ABLIM2 ENSGALG00000043448 48 0.849 - - - - - - 0.849 - - - actin binding LIM protein family member 2 [Source:HGNC Symbol;Acc:HGNC:19195]
82. HEMGN ENSGALG00000045740 8 0.847 - - - - - - - 0.847 - - hemogen, transcript variant X1
83. STK32B ENSGALG00000029510 95 0.845 - - - - - - - 0.845 - - serine/threonine kinase 32B [Source:HGNC Symbol;Acc:HGNC:14217]
84. RASEF ENSGALG00000012576 155 0.839 - - - - - - - 0.839 - - RAS and EF-hand domain containing [Source:HGNC Symbol;Acc:HGNC:26464]
85. SMEK1 SMEK1 95 0.835 - - - - - - - 0.835 - -
86. BRINP3 ENSGALG00000033407 40 0.833 - - - - - - - 0.833 - - BMP/retinoic acid inducible neural specific 3 [Source:HGNC Symbol;Acc:HGNC:22393]
87. SNORA17 SNORA17 39 0.823 - - - - - - - 0.823 - -
88. gga-mir-1652 ENSGALG00000025444 119 0.823 - - - - - - - 0.823 - - gga-mir-1652 [Source:miRBase;Acc:MI0007384]
89. AKAP11 ENSGALG00000022739 82 0.823 - - - - - - - 0.823 - - A-kinase anchoring protein 11 [Source:HGNC Symbol;Acc:HGNC:369]
90. CLCA2 8 0.823 - - - - - - - 0.823 - - chloride channel accessory 2, transcript variant X1
91. UBXN7 ENSGALG00000006385 28 0.821 - - - - 0.821 - - - - - UBX domain protein 7 [Source:HGNC Symbol;Acc:HGNC:29119]
92. ARL8A_1 ENSGALG00000000606 23 0.811 - - - - - - - 0.811 - - ADP ribosylation factor like GTPase 8A [Source:NCBI gene;Acc:421175]
93. HOXA1 ENSGALG00000028095 137 0.807 - - - - - - 0.807 - - - homeobox A1 [Source:HGNC Symbol;Acc:HGNC:5099]
94. IGSF11 ENSGALG00000015084 194 0.805 - - - - - - - 0.805 - - Gallus gallus immunoglobulin superfamily member 11 (IGSF11), mRNA. [Source:RefSeq mRNA;Acc:NM_001318422]
95. ANTXR2 ENSGALG00000043675 52 0.802 - - - - 0.802 - - - - - ANTXR cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:21732]
96. SLC9A3 ENSGALG00000039738 2 0.802 - - - - 0.802 - - - - - solute carrier family 9 member A3 [Source:HGNC Symbol;Acc:HGNC:11073]
97. KLRG2 KLRG2 5 0.802 - - - - 0.802 - - - - -
98. AGBL2 ENSGALG00000029618 8 0.802 - - - - 0.802 - - - - - ATP/GTP binding protein like 2 [Source:HGNC Symbol;Acc:HGNC:26296]
99. LOC772158 ENSGALG00000023819 17 0.802 - - - - - - 0.802 - - - heat shock protein 30C-like
100. WWTR1 ENSGALG00000010412 5 0.802 - - - - 0.802 - - - - - WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]

There are 166 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA