Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for T

Gene Name Gene ID Reads Annotation
T ENSGALG00000011489 2619 T brachyury transcription factor [Source:NCBI gene;Acc:395782]











Genes with expression patterns similar to T

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. T ENSGALG00000011489 2619 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 T brachyury transcription factor [Source:NCBI gene;Acc:395782]
2. OSF-2 OSF-2 10433 6.371 - 0.761 0.799 0.822 0.725 0.796 0.933 - 0.717 0.818
3. RAB38 ENSGALG00000028018 1046 6.161 - 0.708 0.884 0.985 0.897 0.942 0.930 - - 0.815 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
4. SST ENSGALG00000007361 1383 5.759 - - 0.913 0.817 0.922 0.793 0.845 - 0.704 0.765 somatostatin [Source:NCBI gene;Acc:396279]
5. C9H2ORF82 ENSGALG00000040264 4201 5.544 - - 0.946 0.936 0.929 0.977 0.943 - 0.813 - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
6. COL8A1 ENSGALG00000015253 2505 5.404 - - 0.894 0.949 0.926 0.974 0.924 - - 0.737 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
7. COL9A1 ENSGALG00000015970 3788 5.361 - 0.734 0.908 0.905 0.934 0.939 0.941 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
8. TIMP3 ENSGALG00000028627 8706 5.189 - - 0.892 0.908 0.803 0.964 0.784 - 0.838 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
9. SCARA3 ENSGALG00000026651 2559 5.032 - - 0.901 0.842 0.799 0.929 0.803 - 0.758 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
10. COL9A2 ENSGALG00000027526 4685 5.006 - - 0.877 0.870 0.828 0.895 0.836 - 0.700 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
11. COL9A3 ENSGALG00000005628 2842 4.545 - - 0.944 0.870 0.853 0.954 0.924 - - - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
12. TAC1 ENSGALG00000009737 2211 4.48 - 0.727 0.937 0.945 - 0.988 0.883 - - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
13. EMILIN3 ENSGALG00000030012 6200 4.418 - - 0.840 0.873 0.868 0.960 0.877 - - - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
14. SAMD3 ENSGALG00000032409 459 4.39 - - - 0.984 0.821 0.956 0.831 - - 0.798 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
15. SPON2 ENSGALG00000038433 1240 4.292 - - - 0.826 0.707 0.981 0.913 - 0.865 - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
16. WWP2 ENSGALG00000000699 5040 4.098 - - 0.878 0.700 - 0.799 0.936 - 0.785 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
17. OCA2 ENSGALG00000016740 421 3.328 - - - 0.891 0.752 0.975 0.710 - - - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
18. LECT1 LECT1 12694 3.302 - - 0.834 0.796 0.760 - 0.912 - - -
19. ZNF385B ENSGALG00000009012 290 3.287 - - 0.799 0.789 0.776 0.923 - - - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
20. LRRTM1 ENSGALG00000015967 85 3.273 - - 0.825 0.771 - 0.919 0.758 - - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
21. ACAN ENSGALG00000006725 184 3.27 - - - - 0.740 0.981 - - 0.827 0.722 aggrecan [Source:NCBI gene;Acc:395798]
22. SHH ENSGALG00000006379 1943 3.24 - - 0.837 - - - 0.904 - 0.784 0.715 sonic hedgehog [Source:NCBI gene;Acc:395615]
23. EPB41L3 ENSGALG00000038678 5863 2.993 - 0.720 0.780 0.780 - - 0.713 - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
24. HPGDS ENSGALG00000010402 343 2.948 - - 0.754 - 0.734 0.745 - - - 0.715 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
25. SLC15A5 ENSGALG00000013097 213 2.555 - - - - 0.799 0.887 0.869 - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
26. ENSGALG00000008822 ENSGALG00000008822 221 2.511 - - 0.732 - - 0.958 - - - 0.821
27. COL11A1 ENSGALG00000005180 244 2.473 - - - 0.889 - - - - 0.786 0.798 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
28. SCIN ENSGALG00000010770 883 2.443 - - 0.880 0.748 - 0.815 - - - - scinderin [Source:NCBI gene;Acc:420588]
29. IYD ENSGALG00000012392 315 2.267 - - - - - 0.718 - - 0.837 0.712 iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
30. ENSGALG00000014190 ENSGALG00000014190 5735 2.25 - - 0.715 0.709 - 0.826 - - - -
31. SPON1 ENSGALG00000038775 16503 2.13 - - 0.705 - - - 0.722 - 0.703 - spondin 1 [Source:NCBI gene;Acc:395657]
32. NPY7R ENSGALG00000021303 215 1.854 - - - 0.944 - 0.910 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
33. RRAD ENSGALG00000005140 183 1.817 - - - - - 0.993 0.824 - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
34. ENSGALG00000010113 ENSGALG00000010113 508 1.692 - - 0.822 - - - 0.870 - - -
35. CCK ENSGALG00000029788 213 1.69 - - - - - 0.937 - - 0.753 - cholecystokinin [Source:NCBI gene;Acc:414884]
36. RGS4 ENSGALG00000002564 201 1.631 - - - - - 0.803 0.828 - - - regulator of G-protein signaling 4 [Source:NCBI gene;Acc:378901]
37. TXNRD1 ENSGALG00000035345 4784 1.622 - - 0.722 0.900 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
38. TF ENSGALG00000006453 14007 1.583 - - 0.807 - - 0.776 - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
39. PAX1 ENSGALG00000039040 3339 1.552 - - 0.850 - 0.702 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
40. CYP1B1 ENSGALG00000025822 3143 1.54 - - 0.833 - - - - - 0.707 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
41. SOX9 ENSGALG00000004386 14802 1.533 - - 0.813 - - - 0.720 - - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
42. PROK2 ENSGALG00000007785 55 1.511 - - - 0.730 - - 0.781 - - - prokineticin 2 [Source:HGNC Symbol;Acc:HGNC:18455]
43. ZNF536 ENSGALG00000035602 1127 1.509 - - - 0.747 - - 0.762 - - - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
44. C1QTNF3 ENSGALG00000027887 8646 1.439 - - 0.728 - 0.711 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
45. HOXA10 ENSGALG00000026631 1 0.983 - - - - - 0.983 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
46. KCNG1 ENSGALG00000007980 26 0.983 - - - - - 0.983 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
47. APOD ENSGALG00000006995 2 0.983 - - - - - 0.983 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
48. CCL17 ENSGALG00000024466 10 0.981 - - - - - 0.981 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
49. B3GNT7 ENSGALG00000007701 929 0.97 - - - - - 0.970 - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
50. PCDH17 ENSGALG00000016941 1006 0.941 - - - - - 0.941 - - - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
51. LEFTY2 ENSGALG00000009256 1 0.934 - - - - - 0.934 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
52. PTH3R PTH3R 214 0.934 - - - - - 0.934 - - - -
53. CHRDL1 ENSGALG00000008072 711 0.908 - - - - - 0.908 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
54. MYL1 ENSGALG00000002907 1300 0.901 - - - - - 0.901 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
55. RGS18 ENSGALG00000021143 120 0.901 - - - - - 0.901 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
56. WIF1 ENSGALG00000039209 863 0.895 - - - - - 0.895 - - - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
57. SCARA5 ENSGALG00000016580 712 0.891 - - - - - 0.891 - - - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
58. BOC ENSGALG00000015152 4868 0.885 - - - - - - - 0.885 - - BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
59. VPAC2 VPAC2 45 0.882 - - - - - 0.882 - - - -
60. SIAH2 ENSGALG00000010395 2126 0.871 - - - - - - - 0.871 - - siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
61. OBSCN ENSGALG00000032534 20 0.866 - - - 0.866 - - - - - - obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [Source:HGNC Symbol;Acc:HGNC:15719]
62. MMP17 3885 0.865 - - - - - - - 0.865 - - matrix metallopeptidase 17
63. ACTR3B ENSGALG00000006292 2235 0.861 - - - - - - - 0.861 - - ARP3 actin related protein 3 homolog B, transcript variant X1
64. SURF2 ENSGALG00000003181 3500 0.861 - - - - - - - 0.861 - - surfeit 2 [Source:NCBI gene;Acc:417156]
65. MYOG ENSGALG00000000172 460 0.859 - - - - - - - - 0.859 - myogenin [Source:NCBI gene;Acc:374004]
66. SEMA3C ENSGALG00000040444 5404 0.857 - - - - - - - 0.857 - - semaphorin 3C [Source:NCBI gene;Acc:374090]
67. NGFR ENSGALG00000035950 13452 0.857 - - - - - - - 0.857 - - nerve growth factor receptor [Source:NCBI gene;Acc:425805]
68. SLC37A4 ENSGALG00000007716 2263 0.857 - - - - - - - 0.857 - - solute carrier family 37 member 4 [Source:HGNC Symbol;Acc:HGNC:4061]
69. GTSE1 ENSGALG00000004897 2865 0.855 - - - - - - - 0.855 - - G2 and S-phase expressed 1 [Source:NCBI gene;Acc:425204]
70. TBC1D19 ENSGALG00000029673 1868 0.853 - - - - - - - 0.853 - - TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
71. GMFB ENSGALG00000012208 894 0.85 - - - - - - - 0.850 - - glia maturation factor beta [Source:NCBI gene;Acc:423560]
72. ENSGALG00000026309 ENSGALG00000026309 360 0.85 - - - - - - - 0.850 - -
73. CDC37L1 ENSGALG00000014448 2283 0.85 - - - - - - - 0.850 - - cell division cycle 37 like 1 [Source:HGNC Symbol;Acc:HGNC:17179]
74. ALDH6 ALDH6 771 0.85 - - - - - - - 0.850 - -
75. MED20 ENSGALG00000003474 4583 0.85 - - - - - - - 0.850 - - mediator complex subunit 20 [Source:NCBI gene;Acc:419926]
76. LMO4 ENSGALG00000006252 3686 0.849 - - - - - - - 0.849 - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
77. ATP6V0E2 ENSGALG00000020754 2648 0.849 - - - - - - - 0.849 - - ATPase H+ transporting V0 subunit e2 [Source:NCBI gene;Acc:769770]
78. TBC1D16 ENSGALG00000007054 2324 0.848 - - - - - - - 0.848 - - TBC1 domain family member 16 [Source:HGNC Symbol;Acc:HGNC:28356]
79. KIF3B ENSGALG00000006604 2968 0.848 - - - - - - - 0.848 - - kinesin family member 3B [Source:NCBI gene;Acc:419284]
80. BIN1 ENSGALG00000011541 2273 0.848 - - - - - - - 0.848 - - bridging integrator 1 [Source:NCBI gene;Acc:424228]
81. TSPAN5 ENSGALG00000012227 8703 0.847 - - - - - - - 0.847 - - tetraspanin 5 [Source:HGNC Symbol;Acc:HGNC:17753]
82. CHGA ENSGALG00000010820 1028 0.847 - - - - - - - 0.847 - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
83. THAP4 ENSGALG00000006283 1707 0.847 - - - - - - - 0.847 - - THAP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23187]
84. BRF1 ENSGALG00000011705 3406 0.846 - - - - - - - 0.846 - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
85. C16orf93 C16orf93 3351 0.846 - - - - - - - 0.846 - -
86. ZNF148 ENSGALG00000012049 365 0.845 - - - - - - - 0.845 - - zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
87. NKRF ENSGALG00000008645 3531 0.845 - - - - - - - 0.845 - - NFKB repressing factor [Source:NCBI gene;Acc:422370]
88. RFX3 ENSGALG00000010179 305 0.845 - - - - - - - 0.845 - - regulatory factor X3 [Source:HGNC Symbol;Acc:HGNC:9984]
89. PRKAG2 ENSGALG00000006219 504 0.845 - - - - - - - 0.845 - - protein kinase AMP-activated non-catalytic subunit gamma 2 [Source:NCBI gene;Acc:420435]
90. AGO1 ENSGALG00000002249 125 0.845 - - - - - - - 0.845 - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
91. CNOT2 ENSGALG00000010042 7612 0.845 - - - - - - - 0.845 - - CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
92. ENSGALG00000021835 ENSGALG00000021835 424 0.845 - - - - - - - 0.845 - -
93. GPR155 ENSGALG00000014209 1281 0.844 - - - - - - - 0.844 - - G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
94. FRYL ENSGALG00000014103 314 0.844 - - - - - - - 0.844 - - FRY like transcription coactivator [Source:HGNC Symbol;Acc:HGNC:29127]
95. PNPT1 ENSGALG00000043545 1306 0.844 - - - - - - - 0.844 - - polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
96. SENP2 ENSGALG00000031128 1162 0.843 - - - - - - - 0.843 - - SUMO specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:23116]
97. CLEC3B ENSGALG00000030969 363 0.843 - - - - - - - 0.843 - - C-type lectin domain family 3 member B [Source:NCBI gene;Acc:395386]
98. LRRC42 ENSGALG00000010743 384 0.842 - - - - - - - 0.842 - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
99. MAN1A1 ENSGALG00000014878 1061 0.842 - - - - - - - 0.842 - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
100. gga-mir-6681 ENSGALG00000027840 546 0.842 - - - - - - - 0.842 - - gga-mir-6681 [Source:miRBase;Acc:MI0022502]

There are 211 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA