Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Sox3

Gene Name Gene ID Reads Annotation
Sox3 ENSMUSG00000045179 1137 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]







Genes with expression patterns similar to Sox3

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sox3 ENSMUSG00000045179 1137 6 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
2. Sox2 ENSMUSG00000074637 8409 5.015 0.834 0.819 0.898 0.863 0.746 0.855 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
3. Sox1 ENSMUSG00000096014 349 4.149 0.821 0.704 0.853 0.874 - 0.897 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
4. Pou3f2 ENSMUSG00000095139 2416 4.059 0.870 0.774 0.849 0.807 - 0.759 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
5. Ckb ENSMUSG00000001270 8443 3.407 0.919 0.788 0.901 0.799 - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
6. C130071C03Rik ENSMUSG00000050334 1582 3.238 - 0.798 0.776 0.846 - 0.818 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
7. Nrarp ENSMUSG00000078202 1708 3.193 0.893 0.794 0.786 0.720 - - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
8. 2610017I09Rik 2610017I09Rik 1595 3.152 0.794 - 0.808 - 0.734 0.816
9. Trp53i11 ENSMUSG00000068735 15944 3.149 0.786 0.756 0.844 0.763 - - transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
10. Phyhipl ENSMUSG00000037747 636 3.145 - - 0.824 0.847 0.773 0.701 phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
11. Srgap3 ENSMUSG00000030257 2941 2.948 0.806 0.706 0.715 - - 0.721 SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
12. Pou3f3 ENSMUSG00000045515 5137 2.498 - 0.852 0.823 0.823 - - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
13. Foxb1 ENSMUSG00000059246 293 2.481 0.899 - 0.802 0.780 - - forkhead box B1 [Source:MGI Symbol;Acc:MGI:1927549]
14. Robo3 ENSMUSG00000032128 389 2.481 - - 0.784 0.897 - 0.800 roundabout guidance receptor 3 [Source:MGI Symbol;Acc:MGI:1343102]
15. Gpr98 Gpr98 1797 2.461 0.938 - 0.770 - - 0.753
16. Scube2 ENSMUSG00000007279 406 2.45 0.891 0.749 0.810 - - - signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
17. Phf21b ENSMUSG00000016624 849 2.423 0.793 0.762 0.868 - - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
18. Pax3 ENSMUSG00000004872 3095 2.41 0.786 - 0.728 0.896 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
19. Msi1 ENSMUSG00000054256 13785 2.39 - - 0.780 0.782 - 0.828 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
20. Gbx2 ENSMUSG00000034486 478 2.373 0.822 - - 0.803 - 0.748 gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
21. Rfx4 ENSMUSG00000020037 455 2.36 0.798 - 0.861 0.701 - - regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
22. Prdm13 ENSMUSG00000040478 193 2.358 - - - 0.799 0.747 0.812 PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
23. Sema5b ENSMUSG00000052133 891 2.302 - - 0.728 0.788 - 0.786 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
24. Nhlh2 ENSMUSG00000048540 1310 2.301 - - - 0.719 0.751 0.831 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
25. Sall3 ENSMUSG00000024565 449 2.299 0.754 - 0.819 0.726 - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
26. Apba2 ENSMUSG00000030519 840 2.295 0.828 0.749 - - 0.718 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
27. Bhlhe23 ENSMUSG00000045493 61 2.278 0.736 - 0.779 0.763 - - basic helix-loop-helix family, member e23 [Source:MGI Symbol;Acc:MGI:2153710]
28. Hoxb9 ENSMUSG00000020875 2764 2.278 0.786 - 0.778 0.714 - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
29. Hes5 ENSMUSG00000048001 1640 2.272 0.734 0.789 0.749 - - - hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
30. Dtx4 ENSMUSG00000039982 2901 2.252 - 0.717 0.806 0.729 - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
31. Wscd1 ENSMUSG00000020811 318 2.196 - - 0.702 0.707 - 0.787 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
32. Psat1 ENSMUSG00000024640 15774 2.189 0.712 - 0.701 - - 0.776 phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
33. Trim2 ENSMUSG00000027993 3587 2.168 0.714 0.721 0.733 - - - tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
34. Zic1 ENSMUSG00000032368 7734 1.687 - - - 0.877 - 0.810 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
35. Fabp7 ENSMUSG00000019874 3183 1.649 - - - 0.827 - 0.822 fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
36. Zic3 ENSMUSG00000067860 549 1.648 0.765 - - 0.883 - - zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
37. Celsr2 ENSMUSG00000068740 2010 1.647 - - 0.828 0.819 - - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
38. Ildr2 ENSMUSG00000040612 1142 1.639 0.792 - - 0.847 - - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
39. Sox21 ENSMUSG00000061517 464 1.627 0.861 - 0.766 - - - SRY (sex determining region Y)-box 21 [Source:MGI Symbol;Acc:MGI:2654070]
40. Pax6 ENSMUSG00000027168 2751 1.623 0.861 - 0.762 - - - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
41. Miat ENSMUSG00000097767 4258 1.587 0.802 - 0.785 - - - myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
42. Pou2f2 ENSMUSG00000008496 362 1.574 - - - 0.797 - 0.777 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
43. Skor1 ENSMUSG00000022245 61 1.572 - - 0.753 - 0.819 - SKI family transcriptional corepressor 1 [Source:MGI Symbol;Acc:MGI:2443473]
44. Fam181a ENSMUSG00000096753 73 1.567 0.767 - 0.800 - - - family with sequence similarity 181, member A [Source:MGI Symbol;Acc:MGI:3647570]
45. Lect1 122 1.565 - - 0.862 - 0.703 - leukocyte cell derived chemotaxin 1, transcript variant X3
46. Zic4 ENSMUSG00000036972 1968 1.565 - - - 0.856 0.709 - zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
47. Cdk5r2 ENSMUSG00000090071 67 1.561 0.713 - 0.848 - - - cyclin-dependent kinase 5, regulatory subunit 2 (p39) [Source:MGI Symbol;Acc:MGI:1330828]
48. Lbx1 ENSMUSG00000025216 160 1.56 - - 0.787 - 0.773 - ladybird homeobox 1 [Source:MGI Symbol;Acc:MGI:104867]
49. Tubb2b ENSMUSG00000045136 41060 1.555 - - 0.827 - - 0.728 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
50. Pgpep1 ENSMUSG00000056204 2455 1.549 0.772 - - - - 0.777 pyroglutamyl-peptidase I [Source:MGI Symbol;Acc:MGI:1913772]
51. Hoxc9 ENSMUSG00000036139 4145 1.549 - 0.753 0.796 - - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
52. Ednrb ENSMUSG00000022122 1909 1.546 0.833 0.713 - - - - endothelin receptor type B [Source:MGI Symbol;Acc:MGI:102720]
53. Slain1 ENSMUSG00000055717 237 1.546 0.820 - - - 0.726 - SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
54. Neurog1 ENSMUSG00000048904 327 1.535 0.751 0.784 - - - - neurogenin 1 [Source:MGI Symbol;Acc:MGI:107754]
55. Sparcl1 ENSMUSG00000029309 3105 1.535 0.780 0.755 - - - - SPARC-like 1 [Source:MGI Symbol;Acc:MGI:108110]
56. Pax7 ENSMUSG00000028736 356 1.524 0.745 - 0.779 - - - paired box 7 [Source:MGI Symbol;Acc:MGI:97491]
57. Pea15a ENSMUSG00000013698 6011 1.522 - - 0.736 0.786 - - phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
58. Rhbdl3 ENSMUSG00000017692 783 1.517 - - - 0.752 - 0.765 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
59. Pdpn ENSMUSG00000028583, ENSMUSG00000096951 1719 1.506 - - 0.789 0.717 - - podoplanin [Source:MGI Symbol;Acc:MGI:103098]
60. Fzd10 ENSMUSG00000081683 998 1.502 - - 0.717 0.785 - - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
61. Enc1 ENSMUSG00000041773 2185 1.495 - - 0.762 - - 0.733 ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
62. Fam181b ENSMUSG00000051515 734 1.495 0.746 - 0.749 - - - family with sequence similarity 181, member B [Source:MGI Symbol;Acc:MGI:1930951]
63. RP24-113D21.1 RP24-113D21.1 685 1.489 - - - 0.708 - 0.781
64. Btg2 ENSMUSG00000020423 1222 1.48 0.722 - 0.758 - - - B cell translocation gene 2, anti-proliferative [Source:MGI Symbol;Acc:MGI:108384]
65. Mkrn1 ENSMUSG00000029922 1839 1.479 - - 0.753 - - 0.726 makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
66. 0610040B09Rik 0610040B09Rik 333 1.478 0.723 - 0.755 - - -
67. Jam2 ENSMUSG00000053062 1020 1.478 0.719 - - 0.759 - - junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
68. Nhlh1 ENSMUSG00000051251 2017 1.471 0.742 - 0.729 - - - nescient helix loop helix 1 [Source:MGI Symbol;Acc:MGI:98481]
69. Hes6 ENSMUSG00000067071 1692 1.468 0.740 - 0.728 - - - hairy and enhancer of split 6 [Source:MGI Symbol;Acc:MGI:1859852]
70. Hap1 ENSMUSG00000006930 613 1.464 0.737 - 0.727 - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
71. Nckap5 ENSMUSG00000049690 542 1.459 0.743 - - - - 0.716 NCK-associated protein 5 [Source:MGI Symbol;Acc:MGI:2686394]
72. D030055H07Rik ENSMUSG00000086296 161 1.454 0.703 - - 0.751 - - RIKEN cDNA D030055H07 gene [Source:MGI Symbol;Acc:MGI:3605036]
73. Crabp2 ENSMUSG00000004885 6976 1.453 - 0.702 0.751 - - - cellular retinoic acid binding protein II [Source:MGI Symbol;Acc:MGI:88491]
74. Pcdh8 ENSMUSG00000036422 452 1.451 0.715 - 0.736 - - - protocadherin 8 [Source:MGI Symbol;Acc:MGI:1306800]
75. Scrt1 ENSMUSG00000048385 155 1.445 - - 0.713 - - 0.732 scratch family zinc finger 1 [Source:MGI Symbol;Acc:MGI:2176606]
76. Fez1 ENSMUSG00000032118 2537 1.441 - 0.724 0.717 - - - fasciculation and elongation protein zeta 1 (zygin I) [Source:MGI Symbol;Acc:MGI:2670976]
77. RP24-312B12.1 RP24-312B12.1 347 1.438 - - - 0.719 0.719 -
78. Nova1 ENSMUSG00000021047 658 1.431 0.707 - 0.724 - - - neuro-oncological ventral antigen 1 [Source:MGI Symbol;Acc:MGI:104297]
79. Pou3f4 ENSMUSG00000056854 95 0.899 0.899 - - - - - POU domain, class 3, transcription factor 4 [Source:MGI Symbol;Acc:MGI:101894]
80. Itgb8 ENSMUSG00000025321 698 0.88 0.880 - - - - - integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
81. Emid1 ENSMUSG00000034164 456 0.833 - - - 0.833 - - EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:2155091]
82. Trim9 ENSMUSG00000021071 870 0.831 - 0.831 - - - - tripartite motif-containing 9 [Source:MGI Symbol;Acc:MGI:2137354]
83. Gadd45g ENSMUSG00000021453 1925 0.816 - - 0.816 - - - growth arrest and DNA-damage-inducible 45 gamma [Source:MGI Symbol;Acc:MGI:1346325]
84. Lamc3 ENSMUSG00000026840 198 0.812 - 0.812 - - - - laminin gamma 3 [Source:MGI Symbol;Acc:MGI:1344394]
85. Nat8l ENSMUSG00000048142 281 0.811 - - - - - 0.811 N-acetyltransferase 8-like [Source:MGI Symbol;Acc:MGI:2447776]
86. Ptf1a ENSMUSG00000026735 35 0.811 - - - - 0.811 - pancreas specific transcription factor, 1a [Source:MGI Symbol;Acc:MGI:1328312]
87. 2610034M16Rik 2610034M16Rik 71 0.8 0.800 - - - - -
88. Dpysl5 ENSMUSG00000029168 2096 0.798 0.798 - - - - - dihydropyrimidinase-like 5 [Source:MGI Symbol;Acc:MGI:1929772]
89. Lhfpl4 ENSMUSG00000042873 331 0.794 - - - 0.794 - - lipoma HMGIC fusion partner-like protein 4 [Source:MGI Symbol;Acc:MGI:3057108]
90. Cercam ENSMUSG00000039787 610 0.792 0.792 - - - - - cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
91. Cxcr4 ENSMUSG00000045382 524 0.792 0.792 - - - - - chemokine (C-X-C motif) receptor 4 [Source:MGI Symbol;Acc:MGI:109563]
92. Sox2ot ENSMUSG00000105265 475 0.788 - - 0.788 - - - SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
93. Fam171b ENSMUSG00000048388 2388 0.788 0.788 - - - - - family with sequence similarity 171, member B [Source:MGI Symbol;Acc:MGI:2444579]
94. Lhx5 ENSMUSG00000029595 102 0.787 - - 0.787 - - - LIM homeobox protein 5 [Source:MGI Symbol;Acc:MGI:107792]
95. Abca9 ENSMUSG00000041797 80 0.784 0.784 - - - - - ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
96. Sox10 ENSMUSG00000033006 4908 0.782 0.782 - - - - - SRY (sex determining region Y)-box 10 [Source:MGI Symbol;Acc:MGI:98358]
97. Zbtb18 ENSMUSG00000063659 1287 0.782 0.782 - - - - - zinc finger and BTB domain containing 18 [Source:MGI Symbol;Acc:MGI:1353609]
98. Otp ENSMUSG00000021685 170 0.78 - - - - - 0.780 orthopedia homeobox [Source:MGI Symbol;Acc:MGI:99835]
99. Gm14424 ENSMUSG00000085015 67 0.773 - - - - 0.773 - predicted gene 14424 [Source:MGI Symbol;Acc:MGI:3650516]
100. Tfap2a ENSMUSG00000021359 280 0.773 - - - - 0.773 - transcription factor AP-2, alpha [Source:MGI Symbol;Acc:MGI:104671]

There are 75 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA