Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Sox2ot

Gene Name Gene ID Reads Annotation
Sox2ot ENSMUSG00000105265 475 SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]







Genes with expression patterns similar to Sox2ot

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sox2ot ENSMUSG00000105265 475 6 1.000 1.000 1.000 1.000 1.000 1.000 SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
2. Srgap3 ENSMUSG00000030257 2941 2.993 0.713 - 0.809 0.761 - 0.710 SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
3. Myt1 ENSMUSG00000010505 661 2.958 0.720 - 0.833 0.701 - 0.704 myelin transcription factor 1 [Source:MGI Symbol;Acc:MGI:1100535]
4. Tubb3 ENSMUSG00000062380 9211 2.939 0.773 - 0.701 0.721 0.744 - tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
5. Fabp7 ENSMUSG00000019874 3183 2.939 - 0.717 0.704 0.748 0.770 - fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
6. Tubb2b ENSMUSG00000045136 41060 2.441 - - 0.900 0.783 0.758 - tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
7. Nhlh1 ENSMUSG00000051251 2017 2.391 0.733 0.741 0.917 - - - nescient helix loop helix 1 [Source:MGI Symbol;Acc:MGI:98481]
8. Map2 ENSMUSG00000015222 2576 2.325 0.720 - 0.822 0.783 - - microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
9. 2610017I09Rik 2610017I09Rik 1595 2.32 - - 0.761 0.744 0.815 -
10. Sox2 ENSMUSG00000074637 8409 2.309 - - 0.786 0.757 0.766 - SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
11. Rhbdl3 ENSMUSG00000017692 783 2.305 - - 0.847 - 0.719 0.739 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
12. Tuba1a ENSMUSG00000072235 51129 2.294 - - 0.789 0.764 0.741 - tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
13. Apba2 ENSMUSG00000030519 840 2.251 - - 0.744 0.733 0.774 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
14. Btbd17 ENSMUSG00000000202 565 2.235 0.744 - 0.776 - 0.715 - BTB (POZ) domain containing 17 [Source:MGI Symbol;Acc:MGI:1919264]
15. Dpysl5 ENSMUSG00000029168 2096 2.235 0.712 - 0.809 0.714 - - dihydropyrimidinase-like 5 [Source:MGI Symbol;Acc:MGI:1929772]
16. St18 ENSMUSG00000033740 408 2.235 0.702 - 0.800 - 0.733 - suppression of tumorigenicity 18 [Source:MGI Symbol;Acc:MGI:2446700]
17. Soga3 ENSMUSG00000038916 3972 2.234 - - 0.773 0.719 0.742 - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
18. Pou3f3 ENSMUSG00000045515 5137 2.213 - - 0.770 0.723 0.720 - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
19. Rfx4 ENSMUSG00000020037 455 2.189 - 0.701 0.737 0.751 - - regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
20. Elavl3 ENSMUSG00000003410 2830 1.696 0.834 - 0.862 - - - ELAV like RNA binding protein 3 [Source:MGI Symbol;Acc:MGI:109157]
21. Ckb ENSMUSG00000001270 8443 1.633 - - 0.858 0.775 - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
22. Tagln3 ENSMUSG00000022658 6054 1.601 - - 0.856 0.745 - - transgelin 3 [Source:MGI Symbol;Acc:MGI:1926784]
23. Nrarp ENSMUSG00000078202 1708 1.599 - - - 0.793 0.806 - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
24. Fez1 ENSMUSG00000032118 2537 1.59 - - 0.853 - 0.737 - fasciculation and elongation protein zeta 1 (zygin I) [Source:MGI Symbol;Acc:MGI:2670976]
25. Nes ENSMUSG00000004891 8017 1.584 - - 0.839 0.745 - - nestin [Source:MGI Symbol;Acc:MGI:101784]
26. Ncan ENSMUSG00000002341 521 1.578 - - 0.838 - 0.740 - neurocan [Source:MGI Symbol;Acc:MGI:104694]
27. Nhlh2 ENSMUSG00000048540 1310 1.575 - - 0.764 - 0.811 - nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
28. Map1b ENSMUSG00000052727 28977 1.543 - - 0.817 0.726 - - microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
29. Elavl4 ENSMUSG00000028546 6084 1.539 - - 0.801 - 0.738 - ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427]
30. Phf21b ENSMUSG00000016624 849 1.537 - - 0.785 0.752 - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
31. Miat ENSMUSG00000097767 4258 1.523 - - 0.764 0.759 - - myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
32. Gpr98 Gpr98 1797 1.523 - - 0.765 0.758 - -
33. Mapk8ip2 ENSMUSG00000022619 910 1.513 - - 0.800 - 0.713 - mitogen-activated protein kinase 8 interacting protein 2 [Source:MGI Symbol;Acc:MGI:1926555]
34. Hoxc9 ENSMUSG00000036139 4145 1.499 - - 0.790 0.709 - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
35. Sall3 ENSMUSG00000024565 449 1.485 - - 0.743 0.742 - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
36. Stmn3 ENSMUSG00000027581 1327 1.48 0.701 - 0.779 - - - stathmin-like 3 [Source:MGI Symbol;Acc:MGI:1277137]
37. Rbfox3 ENSMUSG00000025576 384 1.477 - - 0.770 0.707 - - RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368]
38. Ptchd2 190 1.474 - - 0.700 - 0.774 - patched domain containing 2, transcript variant X2
39. Rtn1 ENSMUSG00000021087 2547 1.467 0.754 - 0.713 - - - reticulon 1 [Source:MGI Symbol;Acc:MGI:1933947]
40. Rufy3 ENSMUSG00000029291 695 1.466 - - 0.752 - 0.714 - RUN and FYVE domain containing 3 [Source:MGI Symbol;Acc:MGI:106484]
41. Jakmip2 ENSMUSG00000024502 742 1.429 - 0.716 - 0.713 - - janus kinase and microtubule interacting protein 2 [Source:MGI Symbol;Acc:MGI:1923467]
42. Trim2 ENSMUSG00000027993 3587 1.408 - - 0.708 0.700 - - tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
43. Scg3 ENSMUSG00000032181 445 0.9 - - 0.900 - - - secretogranin III [Source:MGI Symbol;Acc:MGI:103032]
44. Dpysl4 ENSMUSG00000025478, ENSMUSG00000111393 1028 0.879 - - 0.879 - - - dihydropyrimidinase-like 4 [Source:MGI Symbol;Acc:MGI:1349764]
45. Ttyh1 ENSMUSG00000030428 279 0.873 - - 0.873 - - - tweety family member 1 [Source:MGI Symbol;Acc:MGI:1889007]
46. Ap3b2 ENSMUSG00000062444 565 0.868 - - 0.868 - - - adaptor-related protein complex 3, beta 2 subunit [Source:MGI Symbol;Acc:MGI:1100869]
47. A930011O12Rik A930011O12Rik 359 0.849 - - 0.849 - - -
48. Celsr2 ENSMUSG00000068740 2010 0.848 - - 0.848 - - - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
49. Trp53i11 ENSMUSG00000068735 15944 0.845 - - 0.845 - - - transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
50. Fgfbp3 ENSMUSG00000047632 2036 0.841 - - 0.841 - - - fibroblast growth factor binding protein 3 [Source:MGI Symbol;Acc:MGI:1919764]
51. Phactr3 ENSMUSG00000027525 233 0.838 - - 0.838 - - - phosphatase and actin regulator 3 [Source:MGI Symbol;Acc:MGI:1921439]
52. Mycl ENSMUSG00000028654 904 0.825 - - 0.825 - - - v-myc avian myelocytomatosis viral oncogene lung carcinoma derived [Source:MGI Symbol;Acc:MGI:96799]
53. Cdk5r1 ENSMUSG00000048895 2376 0.824 - - 0.824 - - - cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:MGI Symbol;Acc:MGI:101764]
54. Trim9 ENSMUSG00000021071 870 0.824 - - 0.824 - - - tripartite motif-containing 9 [Source:MGI Symbol;Acc:MGI:2137354]
55. Onecut2 ENSMUSG00000045991 2334 0.818 0.818 - - - - - one cut domain, family member 2 [Source:MGI Symbol;Acc:MGI:1891408]
56. Brsk2 ENSMUSG00000053046 398 0.81 - 0.810 - - - - BR serine/threonine kinase 2 [Source:MGI Symbol;Acc:MGI:1923020]
57. Stmn4 ENSMUSG00000022044 140 0.807 - - 0.807 - - - stathmin-like 4 [Source:MGI Symbol;Acc:MGI:1931224]
58. Trim67 ENSMUSG00000036913 70 0.804 - - 0.804 - - - tripartite motif-containing 67 [Source:MGI Symbol;Acc:MGI:3045323]
59. Dcx ENSMUSG00000031285 1733 0.803 - - 0.803 - - - doublecortin [Source:MGI Symbol;Acc:MGI:1277171]
60. Kbtbd11 ENSMUSG00000055675 1156 0.803 - - 0.803 - - - kelch repeat and BTB (POZ) domain containing 11 [Source:MGI Symbol;Acc:MGI:1922151]
61. Epha5 ENSMUSG00000029245 256 0.801 - - 0.801 - - - Eph receptor A5 [Source:MGI Symbol;Acc:MGI:99654]
62. Rgma ENSMUSG00000070509 1952 0.795 - - 0.795 - - - repulsive guidance molecule family member A [Source:MGI Symbol;Acc:MGI:2679262]
63. Acot7 ENSMUSG00000028937 5139 0.794 - - 0.794 - - - acyl-CoA thioesterase 7 [Source:MGI Symbol;Acc:MGI:1917275]
64. Dll1 ENSMUSG00000014773 633 0.791 - - - - 0.791 - delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
65. Scrt1 ENSMUSG00000048385 155 0.789 - - 0.789 - - - scratch family zinc finger 1 [Source:MGI Symbol;Acc:MGI:2176606]
66. Kcnq2 ENSMUSG00000016346 94 0.789 - - 0.789 - - - potassium voltage-gated channel, subfamily Q, member 2 [Source:MGI Symbol;Acc:MGI:1309503]
67. Grm2 ENSMUSG00000023192 147 0.788 - - 0.788 - - - glutamate receptor, metabotropic 2 [Source:MGI Symbol;Acc:MGI:1351339]
68. Sox3 ENSMUSG00000045179 1137 0.788 - - 0.788 - - - SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
69. Gadd45g ENSMUSG00000021453 1925 0.783 - - 0.783 - - - growth arrest and DNA-damage-inducible 45 gamma [Source:MGI Symbol;Acc:MGI:1346325]
70. Syn1 ENSMUSG00000037217 289 0.783 - - 0.783 - - - synapsin I [Source:MGI Symbol;Acc:MGI:98460]
71. Kif5a ENSMUSG00000074657 425 0.781 - - 0.781 - - - kinesin family member 5A [Source:MGI Symbol;Acc:MGI:109564]
72. Zic1 ENSMUSG00000032368 7734 0.781 - - - 0.781 - - zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
73. Glra1 ENSMUSG00000000263 586 0.779 - - 0.779 - - - glycine receptor, alpha 1 subunit [Source:MGI Symbol;Acc:MGI:95747]
74. Spock2 ENSMUSG00000058297 1096 0.778 - - 0.778 - - - sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 [Source:MGI Symbol;Acc:MGI:1891351]
75. Pax6 ENSMUSG00000027168 2751 0.776 - - - - 0.776 - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
76. Mapk10 ENSMUSG00000046709 113 0.775 - - 0.775 - - - mitogen-activated protein kinase 10 [Source:MGI Symbol;Acc:MGI:1346863]
77. Nrxn2 ENSMUSG00000033768, ENSMUSG00000107104 552 0.775 - - 0.775 - - - neurexin II [Source:MGI Symbol;Acc:MGI:1096362]
78. Uchl1 ENSMUSG00000029223 2803 0.773 - - 0.773 - - - ubiquitin carboxy-terminal hydrolase L1 [Source:MGI Symbol;Acc:MGI:103149]
79. Gm20501 ENSMUSG00000092536 57 0.772 - - 0.772 - - - predicted gene 20501 [Source:MGI Symbol;Acc:MGI:5141966]
80. Syt11 ENSMUSG00000068923 7491 0.771 - - 0.771 - - - synaptotagmin XI [Source:MGI Symbol;Acc:MGI:1859547]
81. Nmnat2 ENSMUSG00000042751 205 0.77 - - 0.770 - - - nicotinamide nucleotide adenylyltransferase 2 [Source:MGI Symbol;Acc:MGI:2444155]
82. Ppp1r17 ENSMUSG00000002930 374 0.768 - - 0.768 - - - protein phosphatase 1, regulatory subunit 17 [Source:MGI Symbol;Acc:MGI:1333876]
83. Ebf1 ENSMUSG00000057098 3112 0.766 - - - 0.766 - - early B cell factor 1 [Source:MGI Symbol;Acc:MGI:95275]
84. Rps6kl1 ENSMUSG00000019235 20 0.764 - - 0.764 - - - ribosomal protein S6 kinase-like 1 [Source:MGI Symbol;Acc:MGI:2443413]
85. Ago1 ENSMUSG00000041530 7703 0.763 - - 0.763 - - - argonaute RISC catalytic subunit 1 [Source:MGI Symbol;Acc:MGI:2446630]
86. D930028M14Rik ENSMUSG00000074274 452 0.762 0.762 - - - - - RIKEN cDNA D930028M14 gene [Source:MGI Symbol;Acc:MGI:3687343]
87. Celsr3 ENSMUSG00000023473, ENSMUSG00000107269 648 0.757 0.757 - - - - - cadherin, EGF LAG seven-pass G-type receptor 3 [Source:MGI Symbol;Acc:MGI:1858236]
88. Foxd3 ENSMUSG00000067261, ENSMUSG00000116152 168 0.757 - - 0.757 - - - forkhead box D3 [Source:MGI Symbol;Acc:MGI:1347473]
89. RP24-113D21.1 RP24-113D21.1 685 0.755 - - - - 0.755 -
90. Elavl2 ENSMUSG00000008489 2109 0.753 0.753 - - - - - ELAV like RNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1100887]
91. Nacad ENSMUSG00000041073 114 0.753 - - 0.753 - - - NAC alpha domain containing [Source:MGI Symbol;Acc:MGI:3603030]
92. Msi1 ENSMUSG00000054256 13785 0.752 - - - 0.752 - - musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
93. Neurod4 ENSMUSG00000048015 764 0.751 0.751 - - - - - neurogenic differentiation 4 [Source:MGI Symbol;Acc:MGI:108055]
94. Cntn2 ENSMUSG00000053024 1798 0.751 - - - 0.751 - - contactin 2 [Source:MGI Symbol;Acc:MGI:104518]
95. Slc1a2 ENSMUSG00000005089 830 0.75 - - - - 0.750 - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
96. Cpne6 ENSMUSG00000022212 33 0.749 - - 0.749 - - - copine VI [Source:MGI Symbol;Acc:MGI:1334445]
97. Fmn2 ENSMUSG00000028354 577 0.749 - - - - 0.749 - formin 2 [Source:MGI Symbol;Acc:MGI:1859252]
98. Enc1 ENSMUSG00000041773 2185 0.749 - - 0.749 - - - ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
99. Acsbg1 ENSMUSG00000032281 33 0.746 - - 0.746 - - - acyl-CoA synthetase bubblegum family member 1 [Source:MGI Symbol;Acc:MGI:2385656]
100. Gng3 ENSMUSG00000071658 2104 0.744 - - 0.744 - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:MGI Symbol;Acc:MGI:102704]

There are 61 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA