Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Sox2

Gene Name Gene ID Reads Annotation
Sox2 ENSMUSG00000074637 8409 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]







Genes with expression patterns similar to Sox2

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sox2 ENSMUSG00000074637 8409 6 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
2. C130071C03Rik ENSMUSG00000050334 1582 5.411 0.917 0.906 0.885 0.965 0.855 0.883 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
3. Pou3f2 ENSMUSG00000095139 2416 5.375 0.934 0.897 0.953 0.950 0.820 0.821 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
4. Ckb ENSMUSG00000001270 8443 5.171 0.836 0.865 0.911 0.955 0.835 0.769 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
5. Sox3 ENSMUSG00000045179 1137 5.015 0.834 0.819 0.898 0.863 0.746 0.855 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
6. Trim2 ENSMUSG00000027993 3587 4.714 0.769 0.824 0.843 0.829 0.749 0.700 tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
7. Sox1 ENSMUSG00000096014 349 4.68 0.816 0.765 0.783 0.738 0.715 0.863 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
8. Trp53i11 ENSMUSG00000068735 15944 4.622 0.757 0.753 0.796 0.859 0.707 0.750 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
9. Pou3f3 ENSMUSG00000045515 5137 4.407 - 0.877 0.860 0.933 0.868 0.869 POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
10. 2610017I09Rik 2610017I09Rik 1595 4.279 0.816 - 0.852 0.870 0.870 0.871
11. Hes5 ENSMUSG00000048001 1640 4.16 0.885 0.853 0.902 0.815 - 0.705 hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
12. Nrarp ENSMUSG00000078202 1708 4.137 0.864 0.777 0.806 0.861 0.829 - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
13. Miat ENSMUSG00000097767 4258 4.109 0.785 - 0.882 0.865 0.734 0.843 myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
14. Rfx4 ENSMUSG00000020037 455 4.075 0.952 0.833 0.806 0.757 - 0.727 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
15. Ildr2 ENSMUSG00000040612 1142 4.073 0.914 0.790 0.778 0.810 0.781 - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
16. Tubb2b ENSMUSG00000045136 41060 4.069 0.752 - 0.874 0.863 0.791 0.789 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
17. Fabp7 ENSMUSG00000019874 3183 4.057 0.804 0.734 - 0.860 0.837 0.822 fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
18. Gpr98 Gpr98 1797 4.006 0.834 0.838 0.725 0.823 - 0.786
19. Gbx2 ENSMUSG00000034486 478 3.921 0.906 0.738 - 0.799 0.713 0.765 gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
20. Msx3 ENSMUSG00000025469 236 3.878 0.874 - 0.734 0.786 0.748 0.736 msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
21. Vim ENSMUSG00000026728 27519 3.852 - 0.718 0.758 0.814 0.830 0.732 vimentin [Source:MGI Symbol;Acc:MGI:98932]
22. Pax3 ENSMUSG00000004872 3095 3.407 0.861 0.847 - 0.889 - 0.810 paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
23. Nhlh2 ENSMUSG00000048540 1310 3.31 - - 0.799 0.870 0.826 0.815 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
24. Phf21b ENSMUSG00000016624 849 3.271 0.742 0.844 0.819 0.866 - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
25. Zic3 ENSMUSG00000067860 549 3.265 0.857 0.797 - 0.905 0.706 - zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
26. Jam2 ENSMUSG00000053062 1020 3.258 0.807 0.797 0.737 0.917 - - junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
27. Hoxb9 ENSMUSG00000020875 2764 3.253 0.794 0.737 0.831 0.891 - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
28. Fzd10 ENSMUSG00000081683 998 3.238 - 0.801 0.805 0.897 0.735 - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
29. Slc1a2 ENSMUSG00000005089 830 3.209 0.797 - 0.703 0.883 0.826 - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
30. Hoxc9 ENSMUSG00000036139 4145 3.209 0.731 0.770 0.853 0.855 - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
31. Rhbdl3 ENSMUSG00000017692 783 3.206 - 0.720 - 0.814 0.842 0.830 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
32. Pea15a ENSMUSG00000013698 6011 3.201 0.703 - 0.799 0.826 - 0.873 phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
33. Wscd1 ENSMUSG00000020811 318 3.197 - - 0.843 0.784 0.766 0.804 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
34. Sema5b ENSMUSG00000052133 891 3.197 0.778 0.802 - 0.818 - 0.799 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
35. AI854517 AI854517 539 3.195 - - 0.782 0.789 0.831 0.793
36. Igfbpl1 ENSMUSG00000035551 856 3.17 0.828 0.727 0.804 0.811 - - insulin-like growth factor binding protein-like 1 [Source:MGI Symbol;Acc:MGI:1933198]
37. Pax6 ENSMUSG00000027168 2751 3.143 0.827 - 0.802 0.723 0.791 - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
38. Dll1 ENSMUSG00000014773 633 3.114 - - 0.766 0.787 0.857 0.704 delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
39. Srgap3 ENSMUSG00000030257 2941 3.101 0.726 0.799 - 0.824 - 0.752 SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
40. Tagln3 ENSMUSG00000022658 6054 3.061 - - 0.770 0.802 0.732 0.757 transgelin 3 [Source:MGI Symbol;Acc:MGI:1926784]
41. Mkrn1 ENSMUSG00000029922 1839 3.032 0.717 - 0.755 0.782 - 0.778 makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
42. Rmst ENSMUSG00000112117 594 3.023 0.721 0.792 - 0.740 - 0.770 rhabdomyosarcoma 2 associated transcript (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1099806]
43. Fgf15 ENSMUSG00000031073 527 3.018 0.743 - 0.797 0.734 0.744 - fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
44. Prdm13 ENSMUSG00000040478 193 2.988 0.732 - - 0.758 0.760 0.738 PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
45. Igsf8 ENSMUSG00000038034 9546 2.971 - 0.707 0.722 0.803 0.739 - immunoglobulin superfamily, member 8 [Source:MGI Symbol;Acc:MGI:2154090]
46. Hoxd3 ENSMUSG00000079277 3066 2.911 - - 0.719 0.775 0.714 0.703 homeobox D3 [Source:MGI Symbol;Acc:MGI:96207]
47. Zic1 ENSMUSG00000032368 7734 2.695 - - - 0.957 0.850 0.888 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
48. Zic4 ENSMUSG00000036972 1968 2.628 - - - 0.930 0.895 0.803 zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
49. Dtx4 ENSMUSG00000039982 2901 2.574 - 0.813 0.841 0.920 - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
50. Msi1 ENSMUSG00000054256 13785 2.552 - - - 0.924 0.812 0.816 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
51. Scube2 ENSMUSG00000007279 406 2.506 0.882 0.861 - - - 0.763 signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
52. Phyhipl ENSMUSG00000037747 636 2.473 - - - 0.896 0.841 0.736 phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
53. Apba2 ENSMUSG00000030519 840 2.422 - - 0.797 0.809 0.816 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
54. Zic2 ENSMUSG00000061524 472 2.412 0.781 0.855 - 0.776 - - zinc finger protein of the cerebellum 2 [Source:MGI Symbol;Acc:MGI:106679]
55. Fam181b ENSMUSG00000051515 734 2.41 0.829 0.777 0.804 - - - family with sequence similarity 181, member B [Source:MGI Symbol;Acc:MGI:1930951]
56. Celsr2 ENSMUSG00000068740 2010 2.345 - - 0.789 0.819 - 0.737 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
57. Slain1 ENSMUSG00000055717 237 2.343 0.861 0.703 - - 0.779 - SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
58. Tuba1a ENSMUSG00000072235 51129 2.342 - - - 0.818 0.823 0.701 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
59. Zic5 ENSMUSG00000041703 1240 2.339 0.824 - 0.756 0.759 - - zinc finger protein of the cerebellum 5 [Source:MGI Symbol;Acc:MGI:1929518]
60. Hoxc6 ENSMUSG00000001661 9818 2.337 - - - 0.798 0.722 0.817 homeobox C6 [Source:MGI Symbol;Acc:MGI:96197]
61. Pcdh8 ENSMUSG00000036422 452 2.334 0.895 0.737 - - 0.702 - protocadherin 8 [Source:MGI Symbol;Acc:MGI:1306800]
62. Pou3f1 ENSMUSG00000090125 496 2.334 0.803 - 0.706 - - 0.825 POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
63. Brsk2 ENSMUSG00000053046 398 2.321 0.738 - 0.875 - - 0.708 BR serine/threonine kinase 2 [Source:MGI Symbol;Acc:MGI:1923020]
64. Draxin ENSMUSG00000029005 726 2.319 0.757 0.731 - 0.831 - - dorsal inhibitory axon guidance protein [Source:MGI Symbol;Acc:MGI:1917683]
65. Pgpep1 ENSMUSG00000056204 2455 2.318 - - - 0.791 0.735 0.792 pyroglutamyl-peptidase I [Source:MGI Symbol;Acc:MGI:1913772]
66. Psat1 ENSMUSG00000024640 15774 2.313 0.728 - - - 0.753 0.832 phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
67. Sox2ot ENSMUSG00000105265 475 2.309 - - 0.786 0.757 0.766 - SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
68. Nes ENSMUSG00000004891 8017 2.307 - - 0.752 0.803 0.752 - nestin [Source:MGI Symbol;Acc:MGI:101784]
69. Gadd45g ENSMUSG00000021453 1925 2.294 0.751 - 0.804 0.739 - - growth arrest and DNA-damage-inducible 45 gamma [Source:MGI Symbol;Acc:MGI:1346325]
70. Enc1 ENSMUSG00000041773 2185 2.283 - - - 0.833 0.716 0.734 ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
71. Zfp536 ENSMUSG00000043456 869 2.278 0.758 - 0.732 0.788 - - zinc finger protein 536 [Source:MGI Symbol;Acc:MGI:1926102]
72. Ago1 ENSMUSG00000041530 7703 2.274 - - - 0.769 0.801 0.704 argonaute RISC catalytic subunit 1 [Source:MGI Symbol;Acc:MGI:2446630]
73. Glra1 ENSMUSG00000000263 586 2.274 - - 0.707 0.746 - 0.821 glycine receptor, alpha 1 subunit [Source:MGI Symbol;Acc:MGI:95747]
74. Pou2f2 ENSMUSG00000008496 362 2.269 - - 0.823 0.705 - 0.741 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
75. Nedd9 ENSMUSG00000021365 1501 2.256 0.756 0.767 - 0.733 - - neural precursor cell expressed, developmentally down-regulated gene 9 [Source:MGI Symbol;Acc:MGI:97302]
76. Soga3 ENSMUSG00000038916 3972 2.249 0.706 - - 0.826 0.717 - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
77. Nhlh1 ENSMUSG00000051251 2017 2.24 - 0.727 0.742 0.771 - - nescient helix loop helix 1 [Source:MGI Symbol;Acc:MGI:98481]
78. Chrna4 ENSMUSG00000027577 941 2.233 - - 0.755 0.748 - 0.730 cholinergic receptor, nicotinic, alpha polypeptide 4 [Source:MGI Symbol;Acc:MGI:87888]
79. RP24-113D21.1 RP24-113D21.1 685 2.222 - - - 0.721 0.783 0.718
80. Tox3 ENSMUSG00000043668 4413 2.213 - 0.742 0.721 - - 0.750 TOX high mobility group box family member 3 [Source:MGI Symbol;Acc:MGI:3039593]
81. Dll3 ENSMUSG00000003436 1086 2.183 - - 0.735 0.731 - 0.717 delta like canonical Notch ligand 3 [Source:MGI Symbol;Acc:MGI:1096877]
82. Myt1 ENSMUSG00000010505 661 2.147 - - - 0.703 0.705 0.739 myelin transcription factor 1 [Source:MGI Symbol;Acc:MGI:1100535]
83. Sall3 ENSMUSG00000024565 449 1.749 - - 0.896 0.853 - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
84. Hap1 ENSMUSG00000006930 613 1.732 0.899 0.833 - - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
85. Spata13 ENSMUSG00000021990 1020 1.609 0.881 - - 0.728 - - spermatogenesis associated 13 [Source:MGI Symbol;Acc:MGI:104838]
86. Pdpn ENSMUSG00000028583, ENSMUSG00000096951 1719 1.601 - - 0.819 0.782 - - podoplanin [Source:MGI Symbol;Acc:MGI:103098]
87. Cercam ENSMUSG00000039787 610 1.577 0.825 0.752 - - - - cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
88. Zbtb18 ENSMUSG00000063659 1287 1.572 0.862 0.710 - - - - zinc finger and BTB domain containing 18 [Source:MGI Symbol;Acc:MGI:1353609]
89. 2510009E07Rik ENSMUSG00000043391 672 1.569 0.797 - - 0.772 - - RIKEN cDNA 2510009E07 gene [Source:MGI Symbol;Acc:MGI:1919440]
90. H2-K1 ENSMUSG00000061232 613 1.568 0.747 - 0.821 - - - histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
91. Hoxd1 ENSMUSG00000042448 332 1.544 - - - 0.830 0.714 - homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]
92. Btg2 ENSMUSG00000020423 1222 1.543 - - 0.774 0.769 - - B cell translocation gene 2, anti-proliferative [Source:MGI Symbol;Acc:MGI:108384]
93. Kif21a ENSMUSG00000022629 1223 1.542 - - - - 0.791 0.751 kinesin family member 21A [Source:MGI Symbol;Acc:MGI:109188]
94. Robo3 ENSMUSG00000032128 389 1.538 - 0.712 - 0.826 - - roundabout guidance receptor 3 [Source:MGI Symbol;Acc:MGI:1343102]
95. Npas3 ENSMUSG00000021010 2049 1.518 0.732 - - 0.786 - - neuronal PAS domain protein 3 [Source:MGI Symbol;Acc:MGI:1351610]
96. Frmd5 ENSMUSG00000027238 224 1.511 0.738 - 0.773 - - - FERM domain containing 5 [Source:MGI Symbol;Acc:MGI:2442557]
97. Itgb8 ENSMUSG00000025321 698 1.51 0.795 - - 0.715 - - integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
98. Gm3764 ENSMUSG00000097156 474 1.5 - - - 0.736 0.764 - predicted gene 3764 [Source:MGI Symbol;Acc:MGI:3781938]
99. Map1b ENSMUSG00000052727 28977 1.49 - - 0.714 0.776 - - microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
100. Mapk8ip2 ENSMUSG00000022619 910 1.487 - - 0.728 0.759 - - mitogen-activated protein kinase 8 interacting protein 2 [Source:MGI Symbol;Acc:MGI:1926555]

There are 110 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA