Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Sox1

Gene Name Gene ID Reads Annotation
Sox1 ENSMUSG00000096014 349 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]







Genes with expression patterns similar to Sox1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sox1 ENSMUSG00000096014 349 6 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
2. Sox2 ENSMUSG00000074637 8409 4.68 0.816 0.765 0.783 0.738 0.715 0.863 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
3. Sox3 ENSMUSG00000045179 1137 4.149 0.821 0.704 0.853 0.874 - 0.897 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
4. Gbx2 ENSMUSG00000034486 478 3.229 0.823 0.708 - 0.861 - 0.837 gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
5. C130071C03Rik ENSMUSG00000050334 1582 3.222 0.787 0.862 - 0.746 - 0.827 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
6. Sox21 ENSMUSG00000061517 464 2.947 0.727 0.754 - 0.716 - 0.750 SRY (sex determining region Y)-box 21 [Source:MGI Symbol;Acc:MGI:2654070]
7. Scube2 ENSMUSG00000007279 406 2.382 0.832 0.843 - - - 0.707 signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
8. 2610017I09Rik 2610017I09Rik 1595 2.359 - - 0.788 - 0.757 0.814
9. Fabp7 ENSMUSG00000019874 3183 2.351 0.754 - - 0.797 - 0.800 fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
10. Prdm13 ENSMUSG00000040478 193 2.323 - 0.764 - 0.740 - 0.819 PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
11. Ckb ENSMUSG00000001270 8443 2.318 0.744 0.751 0.823 - - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
12. Nrarp ENSMUSG00000078202 1708 2.255 0.738 - 0.782 - 0.735 - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
13. Pou3f2 ENSMUSG00000095139 2416 2.239 0.786 - 0.746 - - 0.707 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
14. Tubb2b ENSMUSG00000045136 41060 2.225 - - 0.733 - 0.788 0.704 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
15. Rmst ENSMUSG00000112117 594 2.203 0.737 - - 0.729 - 0.737 rhabdomyosarcoma 2 associated transcript (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1099806]
16. Zic1 ENSMUSG00000032368 7734 1.592 - - - 0.770 - 0.822 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
17. Neurog2 ENSMUSG00000027967 670 1.584 - - - - 0.815 0.769 neurogenin 2 [Source:MGI Symbol;Acc:MGI:109619]
18. Pax3 ENSMUSG00000004872 3095 1.567 0.799 - - 0.768 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
19. Pou3f1 ENSMUSG00000090125 496 1.532 0.702 - - - - 0.830 POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
20. Myt1 ENSMUSG00000010505 661 1.53 - - - - 0.808 0.722 myelin transcription factor 1 [Source:MGI Symbol;Acc:MGI:1100535]
21. Ildr2 ENSMUSG00000040612 1142 1.529 0.822 - - 0.707 - - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
22. Gldc ENSMUSG00000024827 695 1.525 - 0.718 0.807 - - - glycine decarboxylase [Source:MGI Symbol;Acc:MGI:1341155]
23. Rfx4 ENSMUSG00000020037 455 1.524 0.771 - 0.753 - - - regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
24. Sema5b ENSMUSG00000052133 891 1.523 0.767 - - - - 0.756 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
25. Nedd9 ENSMUSG00000021365 1501 1.514 0.736 0.778 - - - - neural precursor cell expressed, developmentally down-regulated gene 9 [Source:MGI Symbol;Acc:MGI:97302]
26. Pcdh8 ENSMUSG00000036422 452 1.503 0.762 - - - 0.741 - protocadherin 8 [Source:MGI Symbol;Acc:MGI:1306800]
27. Bhlhe23 ENSMUSG00000045493 61 1.493 - - 0.736 0.757 - - basic helix-loop-helix family, member e23 [Source:MGI Symbol;Acc:MGI:2153710]
28. Kif21a ENSMUSG00000022629 1223 1.487 - - - - 0.722 0.765 kinesin family member 21A [Source:MGI Symbol;Acc:MGI:109188]
29. Otp ENSMUSG00000021685 170 1.483 - - - 0.701 - 0.782 orthopedia homeobox [Source:MGI Symbol;Acc:MGI:99835]
30. Trp53i11 ENSMUSG00000068735 15944 1.482 0.700 - 0.782 - - - transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
31. Crabp2 ENSMUSG00000004885 6976 1.482 - 0.741 0.741 - - - cellular retinoic acid binding protein II [Source:MGI Symbol;Acc:MGI:88491]
32. Gpr98 Gpr98 1797 1.474 0.758 - - - - 0.716
33. Frmd5 ENSMUSG00000027238 224 1.474 0.747 - - - 0.727 - FERM domain containing 5 [Source:MGI Symbol;Acc:MGI:2442557]
34. Robo3 ENSMUSG00000032128 389 1.464 - - 0.712 0.752 - - roundabout guidance receptor 3 [Source:MGI Symbol;Acc:MGI:1343102]
35. Phyhipl ENSMUSG00000037747 636 1.462 - - 0.757 - - 0.705 phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
36. A730017C20Rik ENSMUSG00000050875 517 1.46 0.733 0.727 - - - - RIKEN cDNA A730017C20 gene [Source:MGI Symbol;Acc:MGI:2442934]
37. Psat1 ENSMUSG00000024640 15774 1.458 0.708 - - - - 0.750 phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
38. Emid1 ENSMUSG00000034164 456 1.458 0.702 - - 0.756 - - EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:2155091]
39. Pou3f3 ENSMUSG00000045515 5137 1.458 - 0.740 - - - 0.718 POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
40. Mkrn1 ENSMUSG00000029922 1839 1.45 0.716 - - - - 0.734 makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
41. Zic3 ENSMUSG00000067860 549 1.45 - 0.708 - 0.742 - - zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
42. Pou2f2 ENSMUSG00000008496 362 1.415 - - - 0.713 - 0.702 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
43. Fgf15 ENSMUSG00000031073 527 1.408 - - 0.705 - 0.703 - fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
44. Foxb1 ENSMUSG00000059246 293 0.88 - - 0.880 - - - forkhead box B1 [Source:MGI Symbol;Acc:MGI:1927549]
45. Hap1 ENSMUSG00000006930 613 0.823 0.823 - - - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
46. Zic2 ENSMUSG00000061524 472 0.821 - - 0.821 - - - zinc finger protein of the cerebellum 2 [Source:MGI Symbol;Acc:MGI:106679]
47. Pax6 ENSMUSG00000027168 2751 0.801 0.801 - - - - - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
48. Apba2 ENSMUSG00000030519 840 0.798 - - - - 0.798 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
49. Celsr1 ENSMUSG00000016028 500 0.795 0.795 - - - - - cadherin, EGF LAG seven-pass G-type receptor 1 [Source:MGI Symbol;Acc:MGI:1100883]
50. Rhbdl3 ENSMUSG00000017692 783 0.79 - - - - - 0.790 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
51. Nhlh2 ENSMUSG00000048540 1310 0.788 - - - - - 0.788 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
52. Zic4 ENSMUSG00000036972 1968 0.787 - - - 0.787 - - zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
53. Irx2 ENSMUSG00000001504 819 0.786 0.786 - - - - - Iroquois homeobox 2 [Source:MGI Symbol;Acc:MGI:1197526]
54. Lect1 122 0.783 - - 0.783 - - - leukocyte cell derived chemotaxin 1, transcript variant X3
55. Gcnt4 ENSMUSG00000091387 60 0.782 0.782 - - - - - glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) [Source:MGI Symbol;Acc:MGI:2684919]
56. Insm1 ENSMUSG00000068154 480 0.769 - - - - - 0.769 insulinoma-associated 1 [Source:MGI Symbol;Acc:MGI:1859980]
57. St18 ENSMUSG00000033740 408 0.769 - - - - 0.769 - suppression of tumorigenicity 18 [Source:MGI Symbol;Acc:MGI:2446700]
58. Nat8l ENSMUSG00000048142 281 0.769 - - - - - 0.769 N-acetyltransferase 8-like [Source:MGI Symbol;Acc:MGI:2447776]
59. Slain1 ENSMUSG00000055717 237 0.765 0.765 - - - - - SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
60. B3gat1 ENSMUSG00000045994 72 0.763 0.763 - - - - - beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) [Source:MGI Symbol;Acc:MGI:1924148]
61. Pgpep1 ENSMUSG00000056204 2455 0.762 - - - - - 0.762 pyroglutamyl-peptidase I [Source:MGI Symbol;Acc:MGI:1913772]
62. Rnf165 ENSMUSG00000025427 2394 0.762 - - - - 0.762 - ring finger protein 165 [Source:MGI Symbol;Acc:MGI:2444521]
63. Dner ENSMUSG00000036766 209 0.762 - - 0.762 - - - delta/notch-like EGF repeat containing [Source:MGI Symbol;Acc:MGI:2152889]
64. Msi1 ENSMUSG00000054256 13785 0.761 - - - - - 0.761 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
65. Crabp1 ENSMUSG00000032291 40831 0.761 - - - 0.761 - - cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
66. Zswim5 ENSMUSG00000033948 463 0.76 - - 0.760 - - - zinc finger SWIM-type containing 5 [Source:MGI Symbol;Acc:MGI:1921714]
67. Metrn ENSMUSG00000002274 764 0.76 0.760 - - - - - meteorin, glial cell differentiation regulator [Source:MGI Symbol;Acc:MGI:1917333]
68. Ccnd1 ENSMUSG00000070348 5258 0.76 - - - - - 0.760 cyclin D1 [Source:MGI Symbol;Acc:MGI:88313]
69. Greb1 ENSMUSG00000036523 1779 0.758 0.758 - - - - - gene regulated by estrogen in breast cancer protein [Source:MGI Symbol;Acc:MGI:2149712]
70. Fam181a ENSMUSG00000096753 73 0.755 - - 0.755 - - - family with sequence similarity 181, member A [Source:MGI Symbol;Acc:MGI:3647570]
71. Fam131b ENSMUSG00000029861 53 0.753 - - - - - 0.753 family with sequence similarity 131, member B [Source:MGI Symbol;Acc:MGI:1923406]
72. Msx3 ENSMUSG00000025469 236 0.75 0.750 - - - - - msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
73. RP24-312G4.2 RP24-312G4.2 350 0.75 - - 0.750 - - -
74. Dll1 ENSMUSG00000014773 633 0.75 - - - - 0.750 - delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
75. Gm17618 Gm17618 44 0.749 - - - - - 0.749
76. Sst ENSMUSG00000004366 517 0.748 0.748 - - - - - somatostatin [Source:MGI Symbol;Acc:MGI:98326]
77. Neurog1 ENSMUSG00000048904 327 0.747 - - - - - 0.747 neurogenin 1 [Source:MGI Symbol;Acc:MGI:107754]
78. Phf21b ENSMUSG00000016624 849 0.744 - - 0.744 - - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
79. Hba-a2 ENSMUSG00000069917 40461 0.742 0.742 - - - - - hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
80. Ptchd2 190 0.739 - - - - 0.739 - patched domain containing 2, transcript variant X2
81. Ppp1r17 ENSMUSG00000002930 374 0.736 - - 0.736 - - - protein phosphatase 1, regulatory subunit 17 [Source:MGI Symbol;Acc:MGI:1333876]
82. Hoxd3 ENSMUSG00000079277 3066 0.736 - - 0.736 - - - homeobox D3 [Source:MGI Symbol;Acc:MGI:96207]
83. Soga3 ENSMUSG00000038916 3972 0.734 - - - - 0.734 - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
84. Ak4 ENSMUSG00000028527 973 0.734 0.734 - - - - - adenylate kinase 4 [Source:MGI Symbol;Acc:MGI:87979]
85. Glra1 ENSMUSG00000000263 586 0.734 - - - - - 0.734 glycine receptor, alpha 1 subunit [Source:MGI Symbol;Acc:MGI:95747]
86. Srgap3 ENSMUSG00000030257 2941 0.733 0.733 - - - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
87. Enc1 ENSMUSG00000041773 2185 0.733 - - - - - 0.733 ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
88. RP24-113D21.1 RP24-113D21.1 685 0.732 - - - - - 0.732
89. Hes5 ENSMUSG00000048001 1640 0.73 0.730 - - - - - hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
90. Sstr2 ENSMUSG00000047904 80 0.729 - - - - 0.729 - somatostatin receptor 2 [Source:MGI Symbol;Acc:MGI:98328]
91. Dtx4 ENSMUSG00000039982 2901 0.722 - - 0.722 - - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
92. Hoxd1 ENSMUSG00000042448 332 0.722 - - - 0.722 - - homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]
93. Zbtb18 ENSMUSG00000063659 1287 0.721 0.721 - - - - - zinc finger and BTB domain containing 18 [Source:MGI Symbol;Acc:MGI:1353609]
94. Lhx5 ENSMUSG00000029595 102 0.717 - - 0.717 - - - LIM homeobox protein 5 [Source:MGI Symbol;Acc:MGI:107792]
95. Cdk5r2 ENSMUSG00000090071 67 0.717 - - 0.717 - - - cyclin-dependent kinase 5, regulatory subunit 2 (p39) [Source:MGI Symbol;Acc:MGI:1330828]
96. Kcnk10 ENSMUSG00000033854 16 0.717 - - - 0.717 - - potassium channel, subfamily K, member 10 [Source:MGI Symbol;Acc:MGI:1919508]
97. Fzd10 ENSMUSG00000081683 998 0.716 - - 0.716 - - - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
98. Wscd1 ENSMUSG00000020811 318 0.716 - - - - - 0.716 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
99. 2610034M16Rik 2610034M16Rik 71 0.716 0.716 - - - - -
100. Cadps ENSMUSG00000054423 870 0.715 - - - - 0.715 - Ca2+-dependent secretion activator [Source:MGI Symbol;Acc:MGI:1350922]

There are 19 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA