Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Smarca1

Gene Name Gene ID Reads Annotation
Smarca1 ENSMUSG00000031099 1868 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:MGI Symbol;Acc:MGI:1935127]







Genes with expression patterns similar to Smarca1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Smarca1 ENSMUSG00000031099 1868 6 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:MGI Symbol;Acc:MGI:1935127]
2. Gm15396 ENSMUSG00000109491 112 1.534 - - - - 0.779 0.755 predicted gene 15396 [Source:MGI Symbol;Acc:MGI:3705202]
3. Zfp493 ENSMUSG00000090659 91 1.5 - - 0.750 - - 0.750 zinc finger protein 493 [Source:MGI Symbol;Acc:MGI:1920208]
4. Akr1c12 ENSMUSG00000021211 55 1.498 - - 0.706 - 0.792 - aldo-keto reductase family 1, member C12 [Source:MGI Symbol;Acc:MGI:1351661]
5. Cdc42ep2 ENSMUSG00000045664 212 0.837 - - - - 0.837 - CDC42 effector protein (Rho GTPase binding) 2 [Source:MGI Symbol;Acc:MGI:1929744]
6. Steap2 ENSMUSG00000015653 632 0.823 - - - - 0.823 - six transmembrane epithelial antigen of prostate 2 [Source:MGI Symbol;Acc:MGI:1921301]
7. Gm20204 Gm20204 2410 0.809 - - - - 0.809 -
8. Galt ENSMUSG00000036073 471 0.807 - - - - 0.807 - galactose-1-phosphate uridyl transferase [Source:MGI Symbol;Acc:MGI:95638]
9. Serpinf2 ENSMUSG00000038224 452 0.804 - - - - 0.804 - serine (or cysteine) peptidase inhibitor, clade F, member 2 [Source:MGI Symbol;Acc:MGI:107173]
10. Fn1 ENSMUSG00000026193 12066 0.804 - - - - 0.804 - fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
11. Tmem159 ENSMUSG00000030917 409 0.798 - - - - 0.798 - transmembrane protein 159 [Source:MGI Symbol;Acc:MGI:1925752]
12. Spopl ENSMUSG00000026771 1172 0.791 - - - - 0.791 - speckle-type POZ protein-like [Source:MGI Symbol;Acc:MGI:1924107]
13. Tgfbr3 ENSMUSG00000029287 1818 0.787 - - - - 0.787 - transforming growth factor, beta receptor III [Source:MGI Symbol;Acc:MGI:104637]
14. Tmed2 ENSMUSG00000029390 7156 0.783 - - - - 0.783 - transmembrane p24 trafficking protein 2 [Source:MGI Symbol;Acc:MGI:1929269]
15. Kcnq5 ENSMUSG00000028033 573 0.783 - - - - 0.783 - potassium voltage-gated channel, subfamily Q, member 5 [Source:MGI Symbol;Acc:MGI:1924937]
16. Gyg ENSMUSG00000019528 1230 0.781 - - - - 0.781 - glycogenin [Source:MGI Symbol;Acc:MGI:1351614]
17. Med18 ENSMUSG00000066042 841 0.78 - - - - 0.780 - mediator complex subunit 18 [Source:MGI Symbol;Acc:MGI:1914469]
18. Ddx51 ENSMUSG00000029504 760 0.78 - - - - - 0.780 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Source:MGI Symbol;Acc:MGI:1916913]
19. Tle6 ENSMUSG00000034758 116 0.779 - - - - 0.779 - transducin-like enhancer of split 6 [Source:MGI Symbol;Acc:MGI:2149593]
20. Pced1a ENSMUSG00000037773 574 0.779 - - - - 0.779 - PC-esterase domain containing 1A [Source:MGI Symbol;Acc:MGI:2442177]
21. Zcchc3 ENSMUSG00000074682 8539 0.778 0.778 - - - - - zinc finger, CCHC domain containing 3 [Source:MGI Symbol;Acc:MGI:1915167]
22. Fermt3 ENSMUSG00000024965 174 0.778 - - - - 0.778 - fermitin family member 3 [Source:MGI Symbol;Acc:MGI:2147790]
23. Pex26 ENSMUSG00000067825 293 0.777 - - - - 0.777 - peroxisomal biogenesis factor 26 [Source:MGI Symbol;Acc:MGI:1921293]
24. Fam46a 329 0.777 - - 0.777 - - - family with sequence similarity 46, member A, transcript variant 2
25. Ptcd3 ENSMUSG00000063884 4633 0.776 - - - - - 0.776 pentatricopeptide repeat domain 3 [Source:MGI Symbol;Acc:MGI:1917206]
26. Hmga1-rs1 178 0.776 - - - - 0.776 - high mobility group AT-hook I, related sequence 1, transcript variant 2
27. Bmpr1a ENSMUSG00000021796 5021 0.775 - - - - - 0.775 bone morphogenetic protein receptor, type 1A [Source:MGI Symbol;Acc:MGI:1338938]
28. 4632419I22Rik 4632419I22Rik 1839 0.774 - - - - - 0.774
29. Tha1 ENSMUSG00000017713 54 0.771 - - - - 0.771 - threonine aldolase 1 [Source:MGI Symbol;Acc:MGI:1919026]
30. Gdf2 ENSMUSG00000072625 45 0.771 - - - - 0.771 - growth differentiation factor 2 [Source:MGI Symbol;Acc:MGI:1321394]
31. Reg3a ENSMUSG00000079516 24 0.769 - - - - 0.769 - regenerating islet-derived 3 alpha [Source:MGI Symbol;Acc:MGI:109408]
32. Saa4 ENSMUSG00000040017 48 0.769 - - - - 0.769 - serum amyloid A 4 [Source:MGI Symbol;Acc:MGI:98224]
33. Gm26945 ENSMUSG00000098061, ENSMUSG00000106716 59 0.769 - - - - 0.769 - predicted gene, 26945 [Source:MGI Symbol;Acc:MGI:5504060]
34. Anapc1 ENSMUSG00000014355 5670 0.769 - - - - - 0.769 anaphase promoting complex subunit 1 [Source:MGI Symbol;Acc:MGI:103097]
35. Fga ENSMUSG00000028001 637 0.768 - - - - 0.768 - fibrinogen alpha chain [Source:MGI Symbol;Acc:MGI:1316726]
36. Zfp112 ENSMUSG00000052675 56 0.768 - - - - 0.768 - zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
37. Zfp239 ENSMUSG00000042097 1245 0.767 - - - - 0.767 - zinc finger protein 239 [Source:MGI Symbol;Acc:MGI:1306812]
38. Ctss ENSMUSG00000038642 159 0.767 - - - - 0.767 - cathepsin S [Source:MGI Symbol;Acc:MGI:107341]
39. Tbpl2 ENSMUSG00000061809 24 0.767 - - - - 0.767 - TATA box binding protein like 2 [Source:MGI Symbol;Acc:MGI:2684058]
40. Hist1h4f ENSMUSG00000069274 52 0.766 - - - - - 0.766 histone cluster 1, H4f [Source:MGI Symbol;Acc:MGI:2448425]
41. Camk2a ENSMUSG00000024617 134 0.766 - - - - 0.766 - calcium/calmodulin-dependent protein kinase II alpha [Source:MGI Symbol;Acc:MGI:88256]
42. Gm10040 ENSMUSG00000058360 476 0.766 - - - - 0.766 - predicted gene 10040 [Source:MGI Symbol;Acc:MGI:3708676]
43. Papss2 ENSMUSG00000024899 76 0.766 - - - - 0.766 - 3'-phosphoadenosine 5'-phosphosulfate synthase 2 [Source:MGI Symbol;Acc:MGI:1330223]
44. Chchd5 ENSMUSG00000037938 980 0.766 - - - - 0.766 - coiled-coil-helix-coiled-coil-helix domain containing 5 [Source:MGI Symbol;Acc:MGI:1913420]
45. Acot8 ENSMUSG00000017307 64 0.765 - - - - 0.765 - acyl-CoA thioesterase 8 [Source:MGI Symbol;Acc:MGI:2158201]
46. Rnft1 ENSMUSG00000020521 340 0.764 - - - - 0.764 - ring finger protein, transmembrane 1 [Source:MGI Symbol;Acc:MGI:1924142]
47. Lamp2 ENSMUSG00000016534 3440 0.764 - - 0.764 - - - lysosomal-associated membrane protein 2 [Source:MGI Symbol;Acc:MGI:96748]
48. Apoa2 ENSMUSG00000005681 228 0.764 - - - - 0.764 - apolipoprotein A-II [Source:MGI Symbol;Acc:MGI:88050]
49. Dcaf8 ENSMUSG00000026554 1818 0.764 - - 0.764 - - - DDB1 and CUL4 associated factor 8 [Source:MGI Symbol;Acc:MGI:91860]
50. Rpl27-ps2 ENSMUSG00000082171 89 0.764 - - - - 0.764 - ribosomal protein L27, pseudogene 2 [Source:MGI Symbol;Acc:MGI:3649792]
51. Hsbp1l1 ENSMUSG00000078963 61 0.764 - - - - 0.764 - heat shock factor binding protein 1-like 1 [Source:MGI Symbol;Acc:MGI:1913505]
52. Anxa1 ENSMUSG00000024659 60 0.764 - - - - 0.764 - annexin A1 [Source:MGI Symbol;Acc:MGI:96819]
53. Tmem178 ENSMUSG00000024245 594 0.763 - - - - 0.763 - transmembrane protein 178 [Source:MGI Symbol;Acc:MGI:1915277]
54. Scml2 ENSMUSG00000000037 154 0.762 - - - - 0.762 - Scm polycomb group protein like 2 [Source:MGI Symbol;Acc:MGI:1340042]
55. Pde11a ENSMUSG00000075270 109 0.762 - - - - 0.762 - phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
56. Parp12 ENSMUSG00000038507 133 0.761 - - - - 0.761 - poly (ADP-ribose) polymerase family, member 12 [Source:MGI Symbol;Acc:MGI:2143990]
57. Syt6 ENSMUSG00000027849 95 0.761 - - - - 0.761 - synaptotagmin VI [Source:MGI Symbol;Acc:MGI:1859544]
58. Tbx5 ENSMUSG00000018263 655 0.761 - - - - 0.761 - T-box 5 [Source:MGI Symbol;Acc:MGI:102541]
59. Syde2 ENSMUSG00000036863 364 0.76 - - 0.760 - - - synapse defective 1, Rho GTPase, homolog 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:3036264]
60. Slitrk4 ENSMUSG00000046699 163 0.76 - - - - 0.760 - SLIT and NTRK-like family, member 4 [Source:MGI Symbol;Acc:MGI:2442509]
61. Elovl1 ENSMUSG00000006390 1606 0.76 - - - - - 0.760 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 [Source:MGI Symbol;Acc:MGI:1858959]
62. Zfp637 ENSMUSG00000059689 866 0.759 - - - - 0.759 - zinc finger protein 637 [Source:MGI Symbol;Acc:MGI:2448537]
63. Runx2 ENSMUSG00000039153 319 0.759 - - - - 0.759 - runt related transcription factor 2 [Source:MGI Symbol;Acc:MGI:99829]
64. Slc45a3 ENSMUSG00000026435 85 0.759 - - - - 0.759 - solute carrier family 45, member 3 [Source:MGI Symbol;Acc:MGI:1922082]
65. Hist1h1b ENSMUSG00000058773 461 0.758 - - - - 0.758 - histone cluster 1, H1b [Source:MGI Symbol;Acc:MGI:1861461]
66. Ddx50 ENSMUSG00000020076 3606 0.757 - - - - 0.757 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Source:MGI Symbol;Acc:MGI:2182303]
67. Dpf3 ENSMUSG00000021221 210 0.756 - - - - 0.756 - D4, zinc and double PHD fingers, family 3 [Source:MGI Symbol;Acc:MGI:1917377]
68. Myb ENSMUSG00000019982 350 0.756 - - - - 0.756 - myeloblastosis oncogene [Source:MGI Symbol;Acc:MGI:97249]
69. 1700029F12Rik ENSMUSG00000052075 13 0.756 - - - - - 0.756 RIKEN cDNA 1700029F12 gene [Source:MGI Symbol;Acc:MGI:1913729]
70. Klk13 ENSMUSG00000054046 16 0.756 - - - - - 0.756 kallikrein related-peptidase 13 [Source:MGI Symbol;Acc:MGI:3615275]
71. Slfn2 ENSMUSG00000072620, ENSMUSG00000115954, ENSMUSG00000115991, ENSMUSG00000116022 38 0.755 - - - - - 0.755 schlafen 2 [Source:NCBI gene;Acc:20556]
72. Zfp13 ENSMUSG00000062012 261 0.754 - - - - 0.754 - zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
73. Zfp879 ENSMUSG00000044296 77 0.754 - - - - 0.754 - zinc finger protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
74. B830012L14Rik ENSMUSG00000098202 2865 0.754 - - - - 0.754 - RIKEN cDNA B830012L14 gene [Source:MGI Symbol;Acc:MGI:2443332]
75. Gm25492 ENSMUSG00000088008 28 0.754 - - 0.754 - - - predicted gene, 25492 [Source:MGI Symbol;Acc:MGI:5455269]
76. Fstl4 ENSMUSG00000036264 74 0.754 - - - - 0.754 - follistatin-like 4 [Source:MGI Symbol;Acc:MGI:2443199]
77. Kat2b ENSMUSG00000000708 252 0.754 - - - - 0.754 - K(lysine) acetyltransferase 2B [Source:MGI Symbol;Acc:MGI:1343094]
78. Hdhd3 ENSMUSG00000038422 78 0.754 - - - - 0.754 - haloacid dehalogenase-like hydrolase domain containing 3 [Source:MGI Symbol;Acc:MGI:1919998]
79. Zc3hc1 ENSMUSG00000039130 2638 0.753 - - - - 0.753 - zinc finger, C3HC type 1 [Source:MGI Symbol;Acc:MGI:1916023]
80. BC003331 1581 0.753 - - - - 0.753 - cDNA sequence BC003331, transcript variant X1
81. Kctd12b ENSMUSG00000041633 126 0.753 - - 0.753 - - - potassium channel tetramerisation domain containing 12b [Source:MGI Symbol;Acc:MGI:2444667]
82. Gm22620 ENSMUSG00000064634 44 0.753 - - - - - 0.753 predicted gene, 22620 [Source:MGI Symbol;Acc:MGI:5452397]
83. Gm10248 ENSMUSG00000068680 65 0.753 - - - - 0.753 - predicted gene 10248 [Source:MGI Symbol;Acc:MGI:3641931]
84. Cdk3-ps ENSMUSG00000092300 149 0.752 - - - - 0.752 - cyclin-dependent kinase 3, pseudogene [Source:MGI Symbol;Acc:MGI:1916931]
85. Arhgap6 ENSMUSG00000031355 260 0.752 - - - - - 0.752 Rho GTPase activating protein 6 [Source:MGI Symbol;Acc:MGI:1196332]
86. Ifitm10 ENSMUSG00000045777 59 0.75 - - - - - 0.750 interferon induced transmembrane protein 10 [Source:MGI Symbol;Acc:MGI:2444776]
87. BC026590 BC026590 1204 0.75 - - - - 0.750 -
88. Gm6712 ENSMUSG00000072761 246 0.749 - - - - 0.749 - predicted gene 6712 [Source:MGI Symbol;Acc:MGI:3645888]
89. Lyve1 ENSMUSG00000030787 184 0.749 - - - - - 0.749 lymphatic vessel endothelial hyaluronan receptor 1 [Source:MGI Symbol;Acc:MGI:2136348]
90. 1700042O10Rik ENSMUSG00000086391 36 0.749 - - - - - 0.749 RIKEN cDNA 1700042O10 gene [Source:MGI Symbol;Acc:MGI:1920571]
91. Gm5116 ENSMUSG00000100751 16 0.749 - - - - - 0.749 predicted gene 5116 [Source:MGI Symbol;Acc:MGI:3649164]
92. Ccbe1 ENSMUSG00000046318 722 0.748 - - - - 0.748 - collagen and calcium binding EGF domains 1 [Source:MGI Symbol;Acc:MGI:2445053]
93. Pianp ENSMUSG00000030329 98 0.748 - - - - 0.748 - PILR alpha associated neural protein [Source:MGI Symbol;Acc:MGI:2441908]
94. Tfip11 ENSMUSG00000029345 399 0.748 - - - - 0.748 - tuftelin interacting protein 11 [Source:MGI Symbol;Acc:MGI:1930075]
95. Egfem1 ENSMUSG00000063600 71 0.748 - - - - 0.748 - EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
96. Fbln2 ENSMUSG00000064080 1953 0.748 - - - - 0.748 - fibulin 2 [Source:MGI Symbol;Acc:MGI:95488]
97. Ly75 ENSMUSG00000026980 766 0.747 - - - - 0.747 - lymphocyte antigen 75 [Source:MGI Symbol;Acc:MGI:106662]
98. Rnf182 ENSMUSG00000044164 523 0.747 - - 0.747 - - - ring finger protein 182 [Source:MGI Symbol;Acc:MGI:3045355]
99. Prkd1 ENSMUSG00000002688 463 0.746 - - - - 0.746 - protein kinase D1 [Source:MGI Symbol;Acc:MGI:99879]
100. Serpinb6a ENSMUSG00000060147 2361 0.746 - - 0.746 - - - serine (or cysteine) peptidase inhibitor, clade B, member 6a [Source:MGI Symbol;Acc:MGI:103123]

There are 150 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA