Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Shh

Gene Name Gene ID Reads Annotation
Shh ENSMUSG00000002633 468 sonic hedgehog [Source:MGI Symbol;Acc:MGI:98297]







Genes with expression patterns similar to Shh

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Shh ENSMUSG00000002633 468 6 1.000 1.000 1.000 1.000 1.000 1.000 sonic hedgehog [Source:MGI Symbol;Acc:MGI:98297]
2. Pax9 ENSMUSG00000001497 255 2.439 0.749 0.836 0.854 - - - paired box 9 [Source:MGI Symbol;Acc:MGI:97493]
3. Foxa2 ENSMUSG00000037025 154 2.434 - 0.778 - - 0.785 0.871 forkhead box A2 [Source:MGI Symbol;Acc:MGI:1347476]
4. Vtn ENSMUSG00000017344 397 2.288 0.807 0.738 - - - 0.743 vitronectin [Source:MGI Symbol;Acc:MGI:98940]
5. Pax1 ENSMUSG00000037034 2297 1.617 - 0.758 0.859 - - - paired box 1 [Source:MGI Symbol;Acc:MGI:97485]
6. Enpp2 ENSMUSG00000022425 354 1.483 - - - 0.707 - 0.776 ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:MGI Symbol;Acc:MGI:1321390]
7. Arx ENSMUSG00000035277 216 1.454 - 0.753 - 0.701 - - aristaless related homeobox [Source:MGI Symbol;Acc:MGI:1097716]
8. Acan ENSMUSG00000030607 13 0.94 - - 0.940 - - - aggrecan [Source:MGI Symbol;Acc:MGI:99602]
9. Gm14635 ENSMUSG00000087591 5 0.843 - - 0.843 - - - predicted gene 14635 [Source:MGI Symbol;Acc:MGI:3705138]
10. Lgi3 ENSMUSG00000033595 15 0.834 - - - - - 0.834 leucine-rich repeat LGI family, member 3 [Source:MGI Symbol;Acc:MGI:2182619]
11. Spon1 ENSMUSG00000038156 1709 0.834 - - - 0.834 - - spondin 1, (f-spondin) extracellular matrix protein [Source:MGI Symbol;Acc:MGI:2385287]
12. T ENSMUSG00000062327 99 0.832 - - 0.832 - - - brachyury, T-box transcription factor T [Source:MGI Symbol;Acc:MGI:98472]
13. Metrnl ENSMUSG00000039208 66 0.827 - - - - - 0.827 meteorin, glial cell differentiation regulator-like [Source:MGI Symbol;Acc:MGI:2384806]
14. Col2a1 ENSMUSG00000022483 6073 0.821 - - 0.821 - - - collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
15. Pltp ENSMUSG00000017754 12 0.817 - - - - - 0.817 phospholipid transfer protein [Source:MGI Symbol;Acc:MGI:103151]
16. Loxl4 ENSMUSG00000025185 21 0.817 - - 0.817 - - - lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]
17. Gm12611 ENSMUSG00000081578 1 0.81 - - 0.810 - - - predicted gene 12611 [Source:MGI Symbol;Acc:MGI:3650135]
18. AU015336 ENSMUSG00000090203 4 0.81 - - 0.810 - - - expressed sequence AU015336 [Source:MGI Symbol;Acc:MGI:2146536]
19. Slc15a5 ENSMUSG00000044378 2 0.81 - - 0.810 - - - solute carrier family 15, member 5 [Source:MGI Symbol;Acc:MGI:3607714]
20. 5530401A14Rik ENSMUSG00000020703 1 0.81 - - 0.810 - - - RIKEN cDNA 5530401A14 gene [Source:MGI Symbol;Acc:MGI:1918638]
21. Gm13152 7 0.81 - - 0.810 - - - predicted gene 13152
22. C230034O21Rik ENSMUSG00000086181 1 0.81 - - 0.810 - - - RIKEN cDNA C230034O21 gene [Source:MGI Symbol;Acc:MGI:2441892]
23. Gm12459 ENSMUSG00000083153 32 0.804 0.804 - - - - - predicted gene 12459 [Source:MGI Symbol;Acc:MGI:3651071]
24. Itgam ENSMUSG00000030786 399 0.802 - - - - - 0.802 integrin alpha M [Source:MGI Symbol;Acc:MGI:96607]
25. Fibin ENSMUSG00000074971 907 0.802 0.802 - - - - - fin bud initiation factor homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:1914856]
26. Col11a2 ENSMUSG00000024330 55 0.795 - - 0.795 - - - collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
27. Samd3 ENSMUSG00000051354 4 0.774 - - 0.774 - - - sterile alpha motif domain containing 3 [Source:MGI Symbol;Acc:MGI:2685469]
28. Iqcd ENSMUSG00000029601 20 0.771 - - - 0.771 - - IQ motif containing D [Source:MGI Symbol;Acc:MGI:1922982]
29. Hrasls ENSMUSG00000022525 23 0.771 - - - 0.771 - - HRAS-like suppressor [Source:MGI Symbol;Acc:MGI:1351473]
30. Batf ENSMUSG00000034266 4 0.763 - - - - - 0.763 basic leucine zipper transcription factor, ATF-like [Source:MGI Symbol;Acc:MGI:1859147]
31. Ttc30a2 ENSMUSG00000075272 1 0.763 - - - - - 0.763 tetratricopeptide repeat domain 30A2 [Source:MGI Symbol;Acc:MGI:3700200]
32. Vmn2r-ps159 ENSMUSG00000057021 1 0.763 - - - - - 0.763 vomeronasal 2, receptor, pseudogene 159 [Source:MGI Symbol;Acc:MGI:1316735]
33. Ftcd ENSMUSG00000001155 16 0.763 - - - - - 0.763 formiminotransferase cyclodeaminase [Source:MGI Symbol;Acc:MGI:1339962]
34. 9330161L09Rik ENSMUSG00000055271 6 0.763 - - - - - 0.763 RIKEN cDNA 9330161L09 gene [Source:MGI Symbol;Acc:MGI:1924475]
35. Aifm3 ENSMUSG00000022763 11 0.763 - - - - - 0.763 apoptosis-inducing factor, mitochondrion-associated 3 [Source:MGI Symbol;Acc:MGI:1919418]
36. Gm11652 ENSMUSG00000083465 13 0.763 - - - - - 0.763 predicted gene 11652 [Source:MGI Symbol;Acc:MGI:3651204]
37. Adnp ENSMUSG00000051149 4 0.763 - - - - - 0.763 activity-dependent neuroprotective protein [Source:MGI Symbol;Acc:MGI:1338758]
38. 1700008I05Rik 1700008I05Rik 1 0.763 - - - - - 0.763
39. Tctn1 ENSMUSG00000038593 6 0.763 - - - - - 0.763 tectonic family member 1 [Source:MGI Symbol;Acc:MGI:3603820]
40. Gm12296 ENSMUSG00000084967 2 0.763 - - - - - 0.763 predicted gene 12296 [Source:MGI Symbol;Acc:MGI:3711946]
41. Gm5456 ENSMUSG00000094242 7 0.763 - - - - - 0.763 predicted gene 5456 [Source:MGI Symbol;Acc:MGI:3643775]
42. Npy6r ENSMUSG00000038071 1 0.763 - - - - - 0.763 neuropeptide Y receptor Y6 [Source:MGI Symbol;Acc:MGI:1098590]
43. Gm26819 ENSMUSG00000097033 3 0.763 - - - - - 0.763 predicted gene, 26819 [Source:MGI Symbol;Acc:MGI:5477313]
44. Gm25723 ENSMUSG00000077718 2 0.763 - - - - - 0.763 predicted gene, 25723 [Source:MGI Symbol;Acc:MGI:5455500]
45. Gm26930 ENSMUSG00000102142 113 0.763 - - - - - 0.763 predicted gene, 26930 [Source:MGI Symbol;Acc:MGI:5504045]
46. Galr1 ENSMUSG00000024553 3 0.763 - - - - - 0.763 galanin receptor 1 [Source:MGI Symbol;Acc:MGI:1096364]
47. Gm9897 Gm9897 7 0.763 - - - - - 0.763
48. Tmc1 ENSMUSG00000024749 7 0.763 - - - - - 0.763 transmembrane channel-like gene family 1 [Source:MGI Symbol;Acc:MGI:2151016]
49. Cckar ENSMUSG00000029193 9 0.763 - - - - - 0.763 cholecystokinin A receptor [Source:MGI Symbol;Acc:MGI:99478]
50. Plscr5 ENSMUSG00000095654 1 0.763 - - - - - 0.763 phospholipid scramblase family, member 5 [Source:MGI Symbol;Acc:MGI:3779462]
51. Rpl31-ps22 ENSMUSG00000081925 2 0.763 - - - - - 0.763 ribosomal protein L31, pseudogene 22 [Source:MGI Symbol;Acc:MGI:3783213]
52. Gm7936 ENSMUSG00000055771 8 0.763 - - - - - 0.763 predicted pseudogene 7936 [Source:MGI Symbol;Acc:MGI:3646364]
53. Ttll9 ENSMUSG00000074673 21 0.763 - - - - - 0.763 tubulin tyrosine ligase-like family, member 9 [Source:MGI Symbol;Acc:MGI:1913589]
54. Gm8935 ENSMUSG00000095661 6 0.763 - - - - - 0.763 predicted pseudogene 8935 [Source:MGI Symbol;Acc:MGI:3643401]
55. Gif ENSMUSG00000024682 1 0.763 - - - - - 0.763 gastric intrinsic factor [Source:MGI Symbol;Acc:MGI:1202394]
56. Pdilt ENSMUSG00000030968 1 0.763 - - - - - 0.763 protein disulfide isomerase-like, testis expressed [Source:MGI Symbol;Acc:MGI:1919080]
57. Ankfn1 ENSMUSG00000047773 2 0.763 - - - - - 0.763 ankyrin-repeat and fibronectin type III domain containing 1 [Source:MGI Symbol;Acc:MGI:2686021]
58. Gm20465 ENSMUSG00000092275 2 0.763 - - - - - 0.763 predicted gene 20465 [Source:MGI Symbol;Acc:MGI:5141930]
59. Gm1527 ENSMUSG00000074655 1 0.763 - - - - - 0.763 predicted gene 1527 [Source:MGI Symbol;Acc:MGI:2686373]
60. AB041803 AB041803 1 0.763 - - - - - 0.763
61. Sstr3 ENSMUSG00000044933 6 0.763 - - - - - 0.763 somatostatin receptor 3 [Source:MGI Symbol;Acc:MGI:98329]
62. Gm10698 ENSMUSG00000079884 1 0.763 - - - - - 0.763 predicted gene 10698 [Source:MGI Symbol;Acc:MGI:3704329]
63. Tacr1 ENSMUSG00000030043 17 0.762 - - - - - 0.762 tachykinin receptor 1 [Source:MGI Symbol;Acc:MGI:98475]
64. Gm10232 ENSMUSG00000068141 4 0.762 - - - - - 0.762 predicted pseudogene 10232 [Source:MGI Symbol;Acc:MGI:3641637]
65. Ppp1r3a ENSMUSG00000042717 10 0.762 - - - - - 0.762 protein phosphatase 1, regulatory subunit 3A [Source:MGI Symbol;Acc:MGI:2153588]
66. Pcp4 ENSMUSG00000090223 384 0.76 - 0.760 - - - - Purkinje cell protein 4 [Source:MGI Symbol;Acc:MGI:97509]
67. Uncx ENSMUSG00000029546 4593 0.759 - - 0.759 - - - UNC homeobox [Source:MGI Symbol;Acc:MGI:108013]
68. Foxa1 ENSMUSG00000035451 548 0.755 0.755 - - - - - forkhead box A1 [Source:MGI Symbol;Acc:MGI:1347472]
69. Cbr2 ENSMUSG00000025150 318 0.75 - 0.750 - - - - carbonyl reductase 2 [Source:MGI Symbol;Acc:MGI:107200]
70. Tbx22 ENSMUSG00000031241 12 0.749 - - 0.749 - - - T-box 22 [Source:MGI Symbol;Acc:MGI:2389465]
71. Itih1 ENSMUSG00000006529 5 0.747 0.747 - - - - - inter-alpha trypsin inhibitor, heavy chain 1 [Source:MGI Symbol;Acc:MGI:96618]
72. Dio2 ENSMUSG00000007682 26 0.747 0.747 - - - - - deiodinase, iodothyronine, type II [Source:MGI Symbol;Acc:MGI:1338833]
73. Stac3 ENSMUSG00000040287 13 0.747 0.747 - - - - - SH3 and cysteine rich domain 3 [Source:MGI Symbol;Acc:MGI:3606571]
74. Vil1 ENSMUSG00000026175 11 0.747 0.747 - - - - - villin 1 [Source:MGI Symbol;Acc:MGI:98930]
75. Nkd2 ENSMUSG00000021567 1510 0.746 - - 0.746 - - - naked cuticle 2 [Source:MGI Symbol;Acc:MGI:1919543]
76. C1qtnf3 ENSMUSG00000058914 1227 0.744 - - 0.744 - - - C1q and tumor necrosis factor related protein 3 [Source:MGI Symbol;Acc:MGI:1932136]
77. Foxl1 ENSMUSG00000097084 30 0.737 - - 0.737 - - - forkhead box L1 [Source:MGI Symbol;Acc:MGI:1347469]
78. Slc14a2 ENSMUSG00000024552 13 0.734 - - - - - 0.734 solute carrier family 14 (urea transporter), member 2 [Source:MGI Symbol;Acc:MGI:1351653]
79. Foxs1 ENSMUSG00000074676 11 0.73 - - - - 0.730 - forkhead box S1 [Source:MGI Symbol;Acc:MGI:95546]
80. Fam183b ENSMUSG00000049154 63 0.724 - - - 0.724 - - family with sequence similarity 183, member B [Source:MGI Symbol;Acc:MGI:1922679]
81. Itgb1bp2 ENSMUSG00000031312 76 0.719 - - 0.719 - - - integrin beta 1 binding protein 2 [Source:MGI Symbol;Acc:MGI:1353420]
82. Gm14636 ENSMUSG00000073274 22 0.713 0.713 - - - - - predicted gene 14636 [Source:MGI Symbol;Acc:MGI:3641976]
83. Meox1 ENSMUSG00000001493 3105 0.711 - - 0.711 - - - mesenchyme homeobox 1 [Source:MGI Symbol;Acc:MGI:103220]
84. Tnnt2 ENSMUSG00000026414 1982 0.709 - - 0.709 - - - troponin T2, cardiac [Source:MGI Symbol;Acc:MGI:104597]
85. Calb2 ENSMUSG00000003657 24 0.705 0.705 - - - - - calbindin 2 [Source:MGI Symbol;Acc:MGI:101914]
86. Gm21994 ENSMUSG00000074735 13 0.703 - - - - - 0.703 predicted gene 21994 [Source:MGI Symbol;Acc:MGI:5439751]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA