Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Sema5b

Gene Name Gene ID Reads Annotation
Sema5b ENSMUSG00000052133 891 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]







Genes with expression patterns similar to Sema5b

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sema5b ENSMUSG00000052133 891 6 1.000 1.000 1.000 1.000 1.000 1.000 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
2. Sox2 ENSMUSG00000074637 8409 3.197 0.778 0.802 - 0.818 - 0.799 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
3. Scube2 ENSMUSG00000007279 406 2.958 0.784 - 0.721 0.708 - 0.745 signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
4. Gpr98 Gpr98 1797 2.938 - 0.703 - 0.759 0.735 0.741
5. C130071C03Rik ENSMUSG00000050334 1582 2.401 0.838 - - 0.805 - 0.758 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
6. Zic1 ENSMUSG00000032368 7734 2.37 - - - 0.820 0.778 0.772 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
7. Rmst ENSMUSG00000112117 594 2.316 0.809 0.765 - - - 0.742 rhabdomyosarcoma 2 associated transcript (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1099806]
8. Phf21b ENSMUSG00000016624 849 2.304 - - 0.756 0.704 0.844 - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
9. Sox3 ENSMUSG00000045179 1137 2.302 - - 0.728 0.788 - 0.786 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
10. Rfx4 ENSMUSG00000020037 455 2.293 0.797 - - 0.787 - 0.709 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
11. Glra1 ENSMUSG00000000263 586 1.63 - - - - 0.867 0.763 glycine receptor, alpha 1 subunit [Source:MGI Symbol;Acc:MGI:95747]
12. Celsr2 ENSMUSG00000068740 2010 1.624 - - - 0.722 0.902 - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
13. Msi1 ENSMUSG00000054256 13785 1.602 - - - 0.805 - 0.797 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
14. Ildr2 ENSMUSG00000040612 1142 1.596 0.820 - - 0.776 - - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
15. Hoxb9 ENSMUSG00000020875 2764 1.573 - - - 0.717 0.856 - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
16. Wscd1 ENSMUSG00000020811 318 1.547 0.756 - - - - 0.791 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
17. Hbb-bh1 ENSMUSG00000052217 55379 1.542 0.747 - - - 0.795 - hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
18. Pou2f2 ENSMUSG00000008496 362 1.538 - - - 0.702 - 0.836 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
19. Fabp7 ENSMUSG00000019874 3183 1.536 0.782 - - 0.754 - - fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
20. Hes5 ENSMUSG00000048001 1640 1.533 0.759 - - - 0.774 - hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
21. Zic3 ENSMUSG00000067860 549 1.532 - 0.709 - 0.823 - - zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
22. Pou3f1 ENSMUSG00000090125 496 1.531 0.779 - - - - 0.752 POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
23. Pax3 ENSMUSG00000004872 3095 1.529 0.722 - - 0.807 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
24. Srgap3 ENSMUSG00000030257 2941 1.526 - 0.749 - - 0.777 - SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
25. Pou3f3 ENSMUSG00000045515 5137 1.525 - 0.726 - 0.799 - - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
26. Sox1 ENSMUSG00000096014 349 1.523 0.767 - - - - 0.756 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
27. Nhlh2 ENSMUSG00000048540 1310 1.513 - - - 0.740 - 0.773 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
28. H2-K1 ENSMUSG00000061232 613 1.506 0.794 - - - - 0.712 histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
29. Pou3f2 ENSMUSG00000095139 2416 1.492 - - - 0.763 - 0.729 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
30. 2610017I09Rik 2610017I09Rik 1595 1.492 - - - 0.710 - 0.782
31. Phyhipl ENSMUSG00000037747 636 1.489 - - - 0.774 - 0.715 phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
32. Slain1 ENSMUSG00000055717 237 1.488 0.776 - - - - 0.712 SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
33. Zic2 ENSMUSG00000061524 472 1.479 0.757 - - 0.722 - - zinc finger protein of the cerebellum 2 [Source:MGI Symbol;Acc:MGI:106679]
34. Tubb2b ENSMUSG00000045136 41060 1.475 - - - 0.732 - 0.743 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
35. 1110004E09Rik 1212 1.474 0.754 - - - 0.720 - RIKEN cDNA 1110004E09 gene
36. Rhbdl3 ENSMUSG00000017692 783 1.472 - - - 0.725 - 0.747 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
37. Spata13 ENSMUSG00000021990 1020 1.441 0.730 0.711 - - - - spermatogenesis associated 13 [Source:MGI Symbol;Acc:MGI:104838]
38. Enc1 ENSMUSG00000041773 2185 1.432 0.710 - - - - 0.722 ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
39. Msx3 ENSMUSG00000025469 236 1.428 0.723 - - - - 0.705 msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
40. Gbx2 ENSMUSG00000034486 478 1.428 0.720 - - 0.708 - - gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
41. AI854517 AI854517 539 1.424 - - - 0.702 - 0.722
42. Grid2 ENSMUSG00000071424 180 0.873 - - - - 0.873 - glutamate receptor, ionotropic, delta 2 [Source:MGI Symbol;Acc:MGI:95813]
43. Brsk2 ENSMUSG00000053046 398 0.872 - - - - 0.872 - BR serine/threonine kinase 2 [Source:MGI Symbol;Acc:MGI:1923020]
44. H2-D1 ENSMUSG00000073411 344 0.86 - - - - 0.860 - histocompatibility 2, D region locus 1 [Source:MGI Symbol;Acc:MGI:95896]
45. Mapk4 ENSMUSG00000024558 228 0.86 - - - - 0.860 - mitogen-activated protein kinase 4 [Source:MGI Symbol;Acc:MGI:2444559]
46. Ccdc177 ENSMUSG00000062961 159 0.859 - - - - 0.859 - coiled-coil domain containing 177 [Source:MGI Symbol;Acc:MGI:2686414]
47. Unc13b ENSMUSG00000028456 543 0.855 - - - - 0.855 - unc-13 homolog B [Source:MGI Symbol;Acc:MGI:1342278]
48. Sgsm3 ENSMUSG00000042303 608 0.853 - - - - 0.853 - small G protein signaling modulator 3 [Source:MGI Symbol;Acc:MGI:1916329]
49. Bcat1 ENSMUSG00000030268 1915 0.853 - - - - 0.853 - branched chain aminotransferase 1, cytosolic [Source:MGI Symbol;Acc:MGI:104861]
50. 5730455P16Rik ENSMUSG00000057181 986 0.846 - - - - 0.846 - RIKEN cDNA 5730455P16 gene [Source:MGI Symbol;Acc:MGI:1917841]
51. Lhx5 ENSMUSG00000029595 102 0.842 0.842 - - - - - LIM homeobox protein 5 [Source:MGI Symbol;Acc:MGI:107792]
52. Nova2 ENSMUSG00000030411 400 0.842 - - - - 0.842 - neuro-oncological ventral antigen 2 [Source:MGI Symbol;Acc:MGI:104296]
53. Ddx27 ENSMUSG00000017999 1798 0.842 - - - - 0.842 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:MGI Symbol;Acc:MGI:2385884]
54. Tmem189 ENSMUSG00000090213 1403 0.84 - - - - 0.840 - transmembrane protein 189 [Source:MGI Symbol;Acc:MGI:2142624]
55. Gm14813 ENSMUSG00000082549 69 0.838 - - - - 0.838 - predicted gene 14813 [Source:MGI Symbol;Acc:MGI:3705714]
56. Snord47 ENSMUSG00000064968 286 0.838 - - - - 0.838 - small nucleolar RNA, C/D box 47 [Source:MGI Symbol;Acc:MGI:3819537]
57. Hap1 ENSMUSG00000006930 613 0.838 0.838 - - - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
58. Sec14l2 ENSMUSG00000003585 109 0.836 - - - - 0.836 - SEC14-like lipid binding 2 [Source:MGI Symbol;Acc:MGI:1915065]
59. Slc22a23 ENSMUSG00000038267 407 0.834 - - - - 0.834 - solute carrier family 22, member 23 [Source:MGI Symbol;Acc:MGI:1920352]
60. Surf2 ENSMUSG00000014873 372 0.834 - - - - 0.834 - surfeit gene 2 [Source:MGI Symbol;Acc:MGI:98444]
61. Acss2 ENSMUSG00000027605 588 0.833 - - - - 0.833 - acyl-CoA synthetase short-chain family member 2 [Source:MGI Symbol;Acc:MGI:1890410]
62. Mcoln1 ENSMUSG00000004567 281 0.833 - - - - 0.833 - mucolipin 1 [Source:MGI Symbol;Acc:MGI:1890498]
63. Ppm1d ENSMUSG00000020525 1303 0.832 - - - - 0.832 - protein phosphatase 1D magnesium-dependent, delta isoform [Source:MGI Symbol;Acc:MGI:1858214]
64. Snph ENSMUSG00000027457 95 0.832 - - - - 0.832 - syntaphilin [Source:MGI Symbol;Acc:MGI:2139270]
65. Coq4 ENSMUSG00000026798 769 0.831 - - - - 0.831 - coenzyme Q4 [Source:MGI Symbol;Acc:MGI:1098826]
66. Gm9083 ENSMUSG00000083033 141 0.829 - - - - 0.829 - predicted gene 9083 [Source:MGI Symbol;Acc:MGI:3644452]
67. Bok ENSMUSG00000026278 242 0.827 - - - - 0.827 - BCL2-related ovarian killer [Source:MGI Symbol;Acc:MGI:1858494]
68. Itih5 ENSMUSG00000025780 374 0.826 - - - - 0.826 - inter-alpha (globulin) inhibitor H5 [Source:MGI Symbol;Acc:MGI:1925751]
69. Recql5 ENSMUSG00000020752 591 0.826 - - - - 0.826 - RecQ protein-like 5 [Source:MGI Symbol;Acc:MGI:2156841]
70. Lmbr1 ENSMUSG00000010721 572 0.824 - - - - 0.824 - limb region 1 [Source:MGI Symbol;Acc:MGI:1861746]
71. Irx2 ENSMUSG00000001504 819 0.824 0.824 - - - - - Iroquois homeobox 2 [Source:MGI Symbol;Acc:MGI:1197526]
72. Pmel ENSMUSG00000025359 54 0.823 - - - - 0.823 - premelanosome protein [Source:MGI Symbol;Acc:MGI:98301]
73. Fbxo8 ENSMUSG00000038206 1079 0.823 - - - - 0.823 - F-box protein 8 [Source:MGI Symbol;Acc:MGI:1354696]
74. 4930480K23Rik ENSMUSG00000097284 105 0.823 - - - - 0.823 - RIKEN cDNA 4930480K23 gene [Source:MGI Symbol;Acc:MGI:1922266]
75. Nol8 ENSMUSG00000021392 1665 0.822 - - - - 0.822 - nucleolar protein 8 [Source:MGI Symbol;Acc:MGI:1918180]
76. Ube2i ENSMUSG00000015120 2950 0.822 - - - - 0.822 - ubiquitin-conjugating enzyme E2I [Source:MGI Symbol;Acc:MGI:107365]
77. Gm11989 ENSMUSG00000083553 73 0.821 - - - - 0.821 - predicted gene 11989 [Source:MGI Symbol;Acc:MGI:3702318]
78. Acsl5 ENSMUSG00000024981 381 0.821 - - - - 0.821 - acyl-CoA synthetase long-chain family member 5 [Source:MGI Symbol;Acc:MGI:1919129]
79. Srxn1 ENSMUSG00000032802 244 0.821 - - - - 0.821 - sulfiredoxin 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104971]
80. Zc3h6 ENSMUSG00000042851 135 0.821 - - - - 0.821 - zinc finger CCCH type containing 6 [Source:MGI Symbol;Acc:MGI:1926001]
81. Rhag ENSMUSG00000023926 119 0.821 - - - - 0.821 - Rhesus blood group-associated A glycoprotein [Source:MGI Symbol;Acc:MGI:1202713]
82. Gm5644 ENSMUSG00000100104 76 0.82 - - - - 0.820 - predicted gene 5644 [Source:MGI Symbol;Acc:MGI:3646381]
83. Nuak2 ENSMUSG00000009772 426 0.82 - - - - 0.820 - NUAK family, SNF1-like kinase, 2 [Source:MGI Symbol;Acc:MGI:1921387]
84. Ddx47 ENSMUSG00000030204 1576 0.82 - - - - 0.820 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]
85. Vmn1r132 ENSMUSG00000074322 39 0.819 - - - - 0.819 - vomeronasal 1 receptor 132 [Source:MGI Symbol;Acc:MGI:3647009]
86. Lrrc28 ENSMUSG00000030556 515 0.819 - - - - 0.819 - leucine rich repeat containing 28 [Source:MGI Symbol;Acc:MGI:1915689]
87. Tmem25 ENSMUSG00000002032 100 0.819 - - - - 0.819 - transmembrane protein 25 [Source:MGI Symbol;Acc:MGI:1918937]
88. Gzmc ENSMUSG00000079186 38 0.818 - - - - 0.818 - granzyme C [Source:MGI Symbol;Acc:MGI:109256]
89. Ttc37 ENSMUSG00000033991 159 0.817 - - - - 0.817 - tetratricopeptide repeat domain 37 [Source:MGI Symbol;Acc:MGI:2679923]
90. Med28 ENSMUSG00000015804 2949 0.817 - - - - 0.817 - mediator complex subunit 28 [Source:MGI Symbol;Acc:MGI:1914249]
91. Jazf1 ENSMUSG00000063568 47 0.817 - - - - 0.817 - JAZF zinc finger 1 [Source:MGI Symbol;Acc:MGI:2141450]
92. Apitd1 412 0.817 - - - - 0.817 - apoptosis-inducing, TAF9-like domain 1
93. 2610307P16Rik ENSMUSG00000085936 253 0.816 - - - - 0.816 - RIKEN cDNA 2610307P16 gene [Source:MGI Symbol;Acc:MGI:1919768]
94. Tbc1d2 ENSMUSG00000039813 51 0.815 - - - - 0.815 - TBC1 domain family, member 2 [Source:MGI Symbol;Acc:MGI:2652885]
95. Ptges2 ENSMUSG00000026820 419 0.815 - - - - 0.815 - prostaglandin E synthase 2 [Source:MGI Symbol;Acc:MGI:1917592]
96. Gm23913 Gm23913 84 0.815 - - - - 0.815 -
97. Kctd10 ENSMUSG00000001098 136 0.815 - - - - 0.815 - potassium channel tetramerisation domain containing 10 [Source:MGI Symbol;Acc:MGI:2141207]
98. Kcnab2 ENSMUSG00000028931 291 0.814 - - - - 0.814 - potassium voltage-gated channel, shaker-related subfamily, beta member 2 [Source:MGI Symbol;Acc:MGI:109239]
99. Frat2 ENSMUSG00000047604 478 0.814 - - - - 0.814 - frequently rearranged in advanced T cell lymphomas 2 [Source:MGI Symbol;Acc:MGI:2673967]
100. Tm9sf4 ENSMUSG00000068040 706 0.813 - - - - 0.813 - transmembrane 9 superfamily protein member 4 [Source:MGI Symbol;Acc:MGI:2139220]

There are 275 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA