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Results for Scn3a

Gene Name Gene ID Reads Annotation
Scn3a ENSMUSG00000057182 420 sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]







Genes with expression patterns similar to Scn3a

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Scn3a ENSMUSG00000057182 420 6 1.000 1.000 1.000 1.000 1.000 1.000 sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
2. Rtn1 ENSMUSG00000021087 2547 2.361 0.732 0.755 - - 0.874 - reticulon 1 [Source:MGI Symbol;Acc:MGI:1933947]
3. Dcx ENSMUSG00000031285 1733 2.329 0.720 0.714 - - 0.895 - doublecortin [Source:MGI Symbol;Acc:MGI:1277171]
4. Nyap2 ENSMUSG00000054976 115 2.22 0.731 - 0.778 - 0.711 - neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 [Source:MGI Symbol;Acc:MGI:2443135]
5. Stmn3 ENSMUSG00000027581 1327 1.664 0.809 - - - 0.855 - stathmin-like 3 [Source:MGI Symbol;Acc:MGI:1277137]
6. Nsg2 ENSMUSG00000020297 1718 1.643 - - 0.871 - 0.772 - neuron specific gene family member 2 [Source:MGI Symbol;Acc:MGI:1202070]
7. Myt1 ENSMUSG00000010505 661 1.587 0.783 - - - 0.804 - myelin transcription factor 1 [Source:MGI Symbol;Acc:MGI:1100535]
8. Cdk5r1 ENSMUSG00000048895 2376 1.573 0.747 - - - 0.826 - cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:MGI Symbol;Acc:MGI:101764]
9. Stmn2 ENSMUSG00000027500 6200 1.57 - - 0.737 - 0.833 - stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
10. Mllt11 ENSMUSG00000053192 1776 1.565 - - 0.713 - 0.852 - myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 [Source:MGI Symbol;Acc:MGI:1929671]
11. Rab6b ENSMUSG00000032549 1005 1.54 - - - 0.718 0.822 - RAB6B, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:107283]
12. Dpysl5 ENSMUSG00000029168 2096 1.536 0.703 - - - 0.833 - dihydropyrimidinase-like 5 [Source:MGI Symbol;Acc:MGI:1929772]
13. Nefm ENSMUSG00000022054 2534 1.534 0.725 - - - 0.809 - neurofilament, medium polypeptide [Source:MGI Symbol;Acc:MGI:97314]
14. Ina ENSMUSG00000034336 3835 1.53 - 0.710 - - 0.820 - internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
15. Sncg ENSMUSG00000023064 1702 1.525 - - 0.731 - 0.794 - synuclein, gamma [Source:MGI Symbol;Acc:MGI:1298397]
16. Crmp1 ENSMUSG00000029121 3165 1.523 - 0.719 - - 0.804 - collapsin response mediator protein 1 [Source:MGI Symbol;Acc:MGI:107793]
17. Ap3b2 ENSMUSG00000062444 565 1.519 0.748 - - - 0.771 - adaptor-related protein complex 3, beta 2 subunit [Source:MGI Symbol;Acc:MGI:1100869]
18. Trim67 ENSMUSG00000036913 70 1.512 - 0.732 - - 0.780 - tripartite motif-containing 67 [Source:MGI Symbol;Acc:MGI:3045323]
19. Tubb3 ENSMUSG00000062380 9211 1.508 - 0.726 - - 0.782 - tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
20. Elavl4 ENSMUSG00000028546 6084 1.497 - 0.714 - - 0.783 - ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427]
21. Sptbn2 ENSMUSG00000067889 4571 1.494 - - - 0.746 0.748 - spectrin beta, non-erythrocytic 2 [Source:MGI Symbol;Acc:MGI:1313261]
22. Fam57b ENSMUSG00000058966 243 1.479 - - - - 0.730 0.749 family with sequence similarity 57, member B [Source:MGI Symbol;Acc:MGI:1916202]
23. Elavl2 ENSMUSG00000008489 2109 1.463 - 0.707 - - 0.756 - ELAV like RNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1100887]
24. Lhx3 ENSMUSG00000026934 117 1.458 0.724 - - - 0.734 - LIM homeobox protein 3 [Source:MGI Symbol;Acc:MGI:102673]
25. Pcsk1n ENSMUSG00000039278 245 1.445 - - 0.731 - 0.714 - proprotein convertase subtilisin/kexin type 1 inhibitor [Source:MGI Symbol;Acc:MGI:1353431]
26. Cadps ENSMUSG00000054423 870 0.876 - - - - 0.876 - Ca2+-dependent secretion activator [Source:MGI Symbol;Acc:MGI:1350922]
27. Fez1 ENSMUSG00000032118 2537 0.873 - - - - 0.873 - fasciculation and elongation protein zeta 1 (zygin I) [Source:MGI Symbol;Acc:MGI:2670976]
28. Chodl ENSMUSG00000022860 172 0.862 - - 0.862 - - - chondrolectin [Source:MGI Symbol;Acc:MGI:2179069]
29. Nefl ENSMUSG00000022055 4031 0.86 - - - - 0.860 - neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
30. 9330159F19Rik ENSMUSG00000004360 464 0.858 - - - - 0.858 - RIKEN cDNA 9330159F19 gene [Source:MGI Symbol;Acc:MGI:3036239]
31. Rab3a ENSMUSG00000031840, ENSMUSG00000111277 252 0.849 - - - - 0.849 - RAB3A, member RAS onco family [Source:NCBI gene;Acc:19339]
32. Rundc3a ENSMUSG00000006575 421 0.845 - - - - 0.845 - RUN domain containing 3A [Source:MGI Symbol;Acc:MGI:1858752]
33. Gap43 ENSMUSG00000047261 5946 0.84 - - - - 0.840 - growth associated protein 43 [Source:MGI Symbol;Acc:MGI:95639]
34. Snhg11 ENSMUSG00000044349 1353 0.84 - - - - 0.840 - small nucleolar RNA host gene 11 [Source:MGI Symbol;Acc:MGI:2441845]
35. Dpysl3 ENSMUSG00000024501 7004 0.834 - - - - 0.834 - dihydropyrimidinase-like 3 [Source:MGI Symbol;Acc:MGI:1349762]
36. L1cam ENSMUSG00000031391 813 0.834 - - - - 0.834 - L1 cell adhesion molecule [Source:MGI Symbol;Acc:MGI:96721]
37. Nmnat2 ENSMUSG00000042751 205 0.826 - - - - 0.826 - nicotinamide nucleotide adenylyltransferase 2 [Source:MGI Symbol;Acc:MGI:2444155]
38. Soga3 ENSMUSG00000038916 3972 0.825 - - - - 0.825 - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
39. Basp1 ENSMUSG00000045763 22946 0.822 - - - - 0.822 - brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
40. Dusp8 ENSMUSG00000037887 348 0.82 - - - - 0.820 - dual specificity phosphatase 8 [Source:MGI Symbol;Acc:MGI:106626]
41. Snap25 ENSMUSG00000027273 427 0.82 - - - - 0.820 - synaptosomal-associated protein 25 [Source:MGI Symbol;Acc:MGI:98331]
42. Actl6b ENSMUSG00000029712 203 0.816 - - - - 0.816 - actin-like 6B [Source:MGI Symbol;Acc:MGI:1933548]
43. Fam155a ENSMUSG00000079157 182 0.811 - - - - 0.811 - family with sequence similarity 155, member A [Source:MGI Symbol;Acc:MGI:2142765]
44. Scrt2 ENSMUSG00000060257 121 0.808 - - 0.808 - - - scratch family zinc finger 2 [Source:MGI Symbol;Acc:MGI:2139287]
45. Spock2 ENSMUSG00000058297 1096 0.807 - - - - 0.807 - sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 [Source:MGI Symbol;Acc:MGI:1891351]
46. Rufy3 ENSMUSG00000029291 695 0.805 - - - - 0.805 - RUN and FYVE domain containing 3 [Source:MGI Symbol;Acc:MGI:106484]
47. Uchl1 ENSMUSG00000029223 2803 0.803 - - - - 0.803 - ubiquitin carboxy-terminal hydrolase L1 [Source:MGI Symbol;Acc:MGI:103149]
48. Mapt ENSMUSG00000018411 1834 0.802 - - - - 0.802 - microtubule-associated protein tau [Source:MGI Symbol;Acc:MGI:97180]
49. Syn1 ENSMUSG00000037217 289 0.801 - - - - 0.801 - synapsin I [Source:MGI Symbol;Acc:MGI:98460]
50. Ndrg4 ENSMUSG00000036564 629 0.801 - - - - 0.801 - N-myc downstream regulated gene 4 [Source:MGI Symbol;Acc:MGI:2384590]
51. Sp8 ENSMUSG00000048562 219 0.8 - - - - 0.800 - trans-acting transcription factor 8 [Source:MGI Symbol;Acc:MGI:2443471]
52. Sln ENSMUSG00000042045 405 0.793 - - 0.793 - - - sarcolipin [Source:MGI Symbol;Acc:MGI:1913652]
53. Cntn1 ENSMUSG00000055022 89 0.793 - - 0.793 - - - contactin 1 [Source:MGI Symbol;Acc:MGI:105980]
54. Akap6 ENSMUSG00000061603 420 0.792 - - - - 0.792 - A kinase (PRKA) anchor protein 6 [Source:MGI Symbol;Acc:MGI:3050566]
55. Fgfbp3 ENSMUSG00000047632 2036 0.787 - - - - 0.787 - fibroblast growth factor binding protein 3 [Source:MGI Symbol;Acc:MGI:1919764]
56. Dner ENSMUSG00000036766 209 0.785 - - 0.785 - - - delta/notch-like EGF repeat containing [Source:MGI Symbol;Acc:MGI:2152889]
57. Zswim5 ENSMUSG00000033948 463 0.784 - - 0.784 - - - zinc finger SWIM-type containing 5 [Source:MGI Symbol;Acc:MGI:1921714]
58. Kif5c ENSMUSG00000026764 1283 0.775 - - - - 0.775 - kinesin family member 5C [Source:MGI Symbol;Acc:MGI:1098269]
59. Ube2ql1 ENSMUSG00000052981 312 0.773 - - - - 0.773 - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:MGI Symbol;Acc:MGI:1924230]
60. Vstm2l ENSMUSG00000037843 86 0.771 - - - - 0.771 - V-set and transmembrane domain containing 2-like [Source:MGI Symbol;Acc:MGI:2685537]
61. Cacng4 ENSMUSG00000020723 1024 0.771 - - - 0.771 - - calcium channel, voltage-dependent, gamma subunit 4 [Source:MGI Symbol;Acc:MGI:1859167]
62. Ank3 ENSMUSG00000069601 3116 0.77 - - - - 0.770 - ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
63. Snrpn ENSMUSG00000102252 2727 0.769 - - - - 0.769 - small nuclear ribonucleoprotein N [Source:MGI Symbol;Acc:MGI:98347]
64. Snap91 ENSMUSG00000033419 286 0.768 - - - - 0.768 - synaptosomal-associated protein 91 [Source:MGI Symbol;Acc:MGI:109132]
65. Ankrd1 ENSMUSG00000024803 49 0.765 - - 0.765 - - - ankyrin repeat domain 1 (cardiac muscle) [Source:MGI Symbol;Acc:MGI:1097717]
66. Apc2 ENSMUSG00000020135 328 0.765 - 0.765 - - - - adenomatosis polyposis coli 2 [Source:MGI Symbol;Acc:MGI:1346052]
67. Elavl3 ENSMUSG00000003410 2830 0.765 - - - - 0.765 - ELAV like RNA binding protein 3 [Source:MGI Symbol;Acc:MGI:109157]
68. Aplp1 ENSMUSG00000006651 2792 0.759 - - - - 0.759 - amyloid beta (A4) precursor-like protein 1 [Source:MGI Symbol;Acc:MGI:88046]
69. Nrcam ENSMUSG00000020598 266 0.758 - - - - 0.758 - neuronal cell adhesion molecule [Source:MGI Symbol;Acc:MGI:104750]
70. RP24-312B12.1 RP24-312B12.1 347 0.757 - - 0.757 - - -
71. Hecw1 ENSMUSG00000021301 236 0.756 - - - - 0.756 - HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 [Source:MGI Symbol;Acc:MGI:2444115]
72. Mapk8ip2 ENSMUSG00000022619 910 0.755 - - - - 0.755 - mitogen-activated protein kinase 8 interacting protein 2 [Source:MGI Symbol;Acc:MGI:1926555]
73. Nnat ENSMUSG00000067786 17900 0.755 - - 0.755 - - - neuronatin [Source:MGI Symbol;Acc:MGI:104716]
74. Slc45a1 ENSMUSG00000039838 52 0.755 - 0.755 - - - - solute carrier family 45, member 1 [Source:MGI Symbol;Acc:MGI:2653235]
75. D930028M14Rik ENSMUSG00000074274 452 0.755 - - 0.755 - - - RIKEN cDNA D930028M14 gene [Source:MGI Symbol;Acc:MGI:3687343]
76. Nrxn1 ENSMUSG00000024109 197 0.752 - - 0.752 - - - neurexin I [Source:MGI Symbol;Acc:MGI:1096391]
77. Tagln3 ENSMUSG00000022658 6054 0.752 - - - - 0.752 - transgelin 3 [Source:MGI Symbol;Acc:MGI:1926784]
78. Nhlh2 ENSMUSG00000048540 1310 0.751 0.751 - - - - - nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
79. Trim46 ENSMUSG00000042766 393 0.75 - - - - 0.750 - tripartite motif-containing 46 [Source:MGI Symbol;Acc:MGI:2673000]
80. Epha5 ENSMUSG00000029245 256 0.749 - - - - 0.749 - Eph receptor A5 [Source:MGI Symbol;Acc:MGI:99654]
81. Klc1 ENSMUSG00000021288 4135 0.748 - - - - 0.748 - kinesin light chain 1 [Source:MGI Symbol;Acc:MGI:107978]
82. Nrxn2 ENSMUSG00000033768, ENSMUSG00000107104 552 0.746 - - - - 0.746 - neurexin II [Source:MGI Symbol;Acc:MGI:1096362]
83. Gm26871 ENSMUSG00000097311 68 0.745 - - - - 0.745 - predicted gene, 26871 [Source:MGI Symbol;Acc:MGI:5477365]
84. Ncan ENSMUSG00000002341 521 0.744 - - - - 0.744 - neurocan [Source:MGI Symbol;Acc:MGI:104694]
85. St8sia3 ENSMUSG00000056812 268 0.744 0.744 - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:MGI Symbol;Acc:MGI:106019]
86. St18 ENSMUSG00000033740 408 0.743 0.743 - - - - - suppression of tumorigenicity 18 [Source:MGI Symbol;Acc:MGI:2446700]
87. Kif5a ENSMUSG00000074657 425 0.741 - - - - 0.741 - kinesin family member 5A [Source:MGI Symbol;Acc:MGI:109564]
88. Scg3 ENSMUSG00000032181 445 0.741 - - - - 0.741 - secretogranin III [Source:MGI Symbol;Acc:MGI:103032]
89. Prdm8 ENSMUSG00000035456 310 0.739 - - - - 0.739 - PR domain containing 8 [Source:MGI Symbol;Acc:MGI:1924880]
90. Rab3c ENSMUSG00000021700 370 0.739 - - - - - 0.739 RAB3C, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1914545]
91. Slc29a4 ENSMUSG00000050822 399 0.739 - - - - 0.739 - solute carrier family 29 (nucleoside transporters), member 4 [Source:MGI Symbol;Acc:MGI:2385330]
92. Celsr3 ENSMUSG00000023473, ENSMUSG00000107269 648 0.738 - 0.738 - - - - cadherin, EGF LAG seven-pass G-type receptor 3 [Source:MGI Symbol;Acc:MGI:1858236]
93. Aak1 ENSMUSG00000057230 108 0.736 - - - - 0.736 - AP2 associated kinase 1 [Source:MGI Symbol;Acc:MGI:1098687]
94. Disp2 ENSMUSG00000040035 230 0.733 - - - - 0.733 - dispatched RND tramsporter family member 2 [Source:MGI Symbol;Acc:MGI:2388733]
95. Fam219a ENSMUSG00000028439 1622 0.732 - - - - 0.732 - family with sequence similarity 219, member A [Source:MGI Symbol;Acc:MGI:1919151]
96. Ttyh1 ENSMUSG00000030428 279 0.731 - - - - 0.731 - tweety family member 1 [Source:MGI Symbol;Acc:MGI:1889007]
97. Gm2694 ENSMUSG00000097248 322 0.731 - - - 0.731 - - predicted gene 2694 [Source:MGI Symbol;Acc:MGI:3780864]
98. Tmem8b ENSMUSG00000078716 428 0.731 - - 0.731 - - - transmembrane protein 8B [Source:MGI Symbol;Acc:MGI:2441680]
99. Adra1a ENSMUSG00000045875 36 0.729 - - 0.729 - - - adrenergic receptor, alpha 1a [Source:MGI Symbol;Acc:MGI:104773]
100. Fam19a5 ENSMUSG00000054863 859 0.728 - - 0.728 - - - family with sequence similarity 19, member A5 [Source:MGI Symbol;Acc:MGI:2146182]

There are 46 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA