Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Scn2a1

Gene Name Gene ID Reads Annotation
Scn2a1 92 sodium channel, voltage-gated, type II, alpha 1, transcript variant X4







Genes with expression patterns similar to Scn2a1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Scn2a1 92 6 1.000 1.000 1.000 1.000 1.000 1.000 sodium channel, voltage-gated, type II, alpha 1, transcript variant X4
2. Mylk3 ENSMUSG00000031698 33 0.906 - - 0.906 - - - myosin light chain kinase 3 [Source:MGI Symbol;Acc:MGI:2443063]
3. Gm23346 ENSMUSG00000065750 54 0.894 - - 0.894 - - - predicted gene, 23346 [Source:MGI Symbol;Acc:MGI:5453123]
4. Sp9 ENSMUSG00000068859 60 0.89 - - - - - 0.890 trans-acting transcription factor 9 [Source:MGI Symbol;Acc:MGI:3574660]
5. Mfsd9 ENSMUSG00000041945 63 0.877 - - 0.877 - - - major facilitator superfamily domain containing 9 [Source:MGI Symbol;Acc:MGI:2443548]
6. Csf3r ENSMUSG00000028859 278 0.855 - - 0.855 - - - colony stimulating factor 3 receptor (granulocyte) [Source:MGI Symbol;Acc:MGI:1339755]
7. Morc4 ENSMUSG00000031434 283 0.853 - - 0.853 - - - microrchidia 4 [Source:MGI Symbol;Acc:MGI:1922996]
8. Hs3st4 ENSMUSG00000078591 144 0.851 - - - - - 0.851 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 [Source:MGI Symbol;Acc:MGI:1333792]
9. Duoxa1 ENSMUSG00000027224 4 0.85 - - - - - 0.850 dual oxidase maturation factor 1 [Source:MGI Symbol;Acc:MGI:2384861]
10. Gm12307 ENSMUSG00000081333 3 0.85 - - - - - 0.850 predicted gene 12307 [Source:MGI Symbol;Acc:MGI:3651667]
11. Rasl10a ENSMUSG00000034209 9 0.85 - - - - - 0.850 RAS-like, family 10, member A [Source:MGI Symbol;Acc:MGI:1922918]
12. Gm3164 ENSMUSG00000091418 5 0.85 - - - - - 0.850 predicted gene 3164 [Source:MGI Symbol;Acc:MGI:3781343]
13. Prr23a Prr23a 4 0.85 - - - - - 0.850
14. Gm6767 ENSMUSG00000081453 10 0.85 - - - - - 0.850 predicted gene 6767 [Source:MGI Symbol;Acc:MGI:3645053]
15. Gm13629 ENSMUSG00000087301 4 0.85 - - - - - 0.850 predicted gene 13629 [Source:MGI Symbol;Acc:MGI:3650683]
16. Gm12728 ENSMUSG00000083780 6 0.847 - - - - - 0.847 predicted gene 12728 [Source:MGI Symbol;Acc:MGI:3649486]
17. Gpr22 ENSMUSG00000044067 21 0.845 - - - - - 0.845 G protein-coupled receptor 22 [Source:MGI Symbol;Acc:MGI:1920260]
18. Gm10605 ENSMUSG00000097974 10 0.838 - - - - - 0.838 predicted gene 10605 [Source:MGI Symbol;Acc:MGI:3642596]
19. Glns-ps1 ENSMUSG00000082100 5 0.836 - - - - - 0.836 glutamine synthetase pseudogene 1 [Source:MGI Symbol;Acc:MGI:95740]
20. Ripk1 ENSMUSG00000021408 95 0.833 - - - - - 0.833 receptor (TNFRSF)-interacting serine-threonine kinase 1 [Source:MGI Symbol;Acc:MGI:108212]
21. 4930425F17Rik 4930425F17Rik 11 0.831 - - - - - 0.831
22. 1700001G11Rik ENSMUSG00000085984 31 0.824 - - - - - 0.824 RIKEN cDNA 1700001G11 gene [Source:MGI Symbol;Acc:MGI:1916553]
23. Gm10837 ENSMUSG00000075465 36 0.82 - - 0.820 - - - predicted gene 10837 [Source:MGI Symbol;Acc:MGI:3642026]
24. Gm17210 ENSMUSG00000090459 18 0.819 - - - - - 0.819 predicted gene 17210 [Source:MGI Symbol;Acc:MGI:4938037]
25. 3110001I22Rik ENSMUSG00000079737 329 0.819 - - - - - 0.819 RIKEN cDNA 3110001I22 gene [Source:MGI Symbol;Acc:MGI:1913848]
26. Nyap1 ENSMUSG00000045348 31 0.819 - - - - - 0.819 neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1 [Source:MGI Symbol;Acc:MGI:2443880]
27. Perp ENSMUSG00000019851 198 0.818 - - 0.818 - - - PERP, TP53 apoptosis effector [Source:MGI Symbol;Acc:MGI:1929938]
28. Psmb10 ENSMUSG00000031897 319 0.816 - - 0.816 - - - proteasome (prosome, macropain) subunit, beta type 10 [Source:MGI Symbol;Acc:MGI:1096380]
29. Mmp12 ENSMUSG00000049723 18 0.815 - - - - - 0.815 matrix metallopeptidase 12 [Source:MGI Symbol;Acc:MGI:97005]
30. Gm19980 Gm19980 33 0.813 - - - - - 0.813
31. Gm8787 7 0.813 - - 0.813 - - - predicted gene 8787
32. Clec4g ENSMUSG00000074491 17 0.813 - - 0.813 - - - C-type lectin domain family 4, member g [Source:MGI Symbol;Acc:MGI:1923113]
33. Gm15982 ENSMUSG00000084132 5 0.813 - - 0.813 - - - predicted gene 15982 [Source:MGI Symbol;Acc:MGI:3801722]
34. Chml ENSMUSG00000078185 7 0.813 - - 0.813 - - - choroideremia-like [Source:MGI Symbol;Acc:MGI:101913]
35. Khdrbs2 ENSMUSG00000026058 8 0.813 - - 0.813 - - - KH domain containing, RNA binding, signal transduction associated 2 [Source:MGI Symbol;Acc:MGI:2159649]
36. Trpm2 ENSMUSG00000009292 9 0.811 - - 0.811 - - - transient receptor potential cation channel, subfamily M, member 2 [Source:MGI Symbol;Acc:MGI:1351901]
37. Gm13034 ENSMUSG00000082195 11 0.811 - - 0.811 - - - predicted gene 13034 [Source:MGI Symbol;Acc:MGI:3650252]
38. Dmrta2 ENSMUSG00000047143 123 0.811 - - - - - 0.811 doublesex and mab-3 related transcription factor like family A2 [Source:MGI Symbol;Acc:MGI:2653629]
39. Vmn1r-ps128 ENSMUSG00000084315 7 0.81 - - 0.810 - - - vomeronasal 1 receptor, pseudogene 128 [Source:MGI Symbol;Acc:MGI:3651039]
40. Vmn2r18 ENSMUSG00000091794 10 0.81 - - 0.810 - - - vomeronasal 2, receptor 18 [Source:MGI Symbol;Acc:MGI:3645314]
41. Zfp804b ENSMUSG00000092094 8 0.81 - - 0.810 - - - zinc finger protein 804B [Source:MGI Symbol;Acc:MGI:2685287]
42. Gm26772 ENSMUSG00000097136 28 0.809 - - - - - 0.809 predicted gene, 26772 [Source:MGI Symbol;Acc:MGI:5477266]
43. Gm14167 ENSMUSG00000087433 40 0.809 - - - - - 0.809 predicted gene 14167 [Source:MGI Symbol;Acc:MGI:3651481]
44. RP24-288C12.6 RP24-288C12.6 17 0.808 - - 0.808 - - -
45. 2900005J15Rik ENSMUSG00000043833 31 0.808 - - 0.808 - - - RIKEN cDNA 2900005J15 gene [Source:MGI Symbol;Acc:MGI:1914511]
46. Cpxm2 ENSMUSG00000030862 19 0.808 - - - - - 0.808 carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
47. Gm10785 ENSMUSG00000085169 14 0.807 - - - 0.807 - - predicted gene 10785 [Source:MGI Symbol;Acc:MGI:3642149]
48. Gm4723 Gm4723 18 0.807 - - 0.807 - - -
49. Gm11675 ENSMUSG00000082272 10 0.804 - - 0.804 - - - predicted gene 11675 [Source:MGI Symbol;Acc:MGI:3650970]
50. Gm24421 Gm24421 38 0.804 - - 0.804 - - -
51. Gm5611 ENSMUSG00000090602 8 0.804 - - 0.804 - - - predicted gene 5611 [Source:MGI Symbol;Acc:MGI:3647121]
52. Ccdc79 Ccdc79 24 0.803 0.803 - - - - -
53. Icos ENSMUSG00000026009 50 0.801 - - 0.801 - - - inducible T cell co-stimulator [Source:MGI Symbol;Acc:MGI:1858745]
54. Jakmip1 ENSMUSG00000063646, ENSMUSG00000113373 41 0.801 - - - - - 0.801 novel protein
55. Nr2e3 ENSMUSG00000032292 10 0.8 - - - - - 0.800 nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
56. 1300002E11Rik ENSMUSG00000097290 149 0.796 0.796 - - - - - RIKEN cDNA 1300002E11 gene [Source:MGI Symbol;Acc:MGI:1919001]
57. Ccdc89 ENSMUSG00000044362 82 0.794 - - 0.794 - - - coiled-coil domain containing 89 [Source:MGI Symbol;Acc:MGI:1917304]
58. Gabrb2 ENSMUSG00000007653 18 0.792 0.792 - - - - - gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 [Source:MGI Symbol;Acc:MGI:95620]
59. Trp73 ENSMUSG00000029026 14 0.791 0.791 - - - - - transformation related protein 73 [Source:MGI Symbol;Acc:MGI:1336991]
60. Spata33 ENSMUSG00000048478 37 0.79 - - 0.790 - - - spermatogenesis associated 33 [Source:MGI Symbol;Acc:MGI:2444920]
61. Gm10268 ENSMUSG00000066475 14 0.789 0.789 - - - - - predicted gene 10268 [Source:MGI Symbol;Acc:MGI:3642637]
62. Kdm8 ENSMUSG00000030752 110 0.789 - - 0.789 - - - lysine (K)-specific demethylase 8 [Source:MGI Symbol;Acc:MGI:1924285]
63. Gm15513 ENSMUSG00000086291 43 0.789 - - - - - 0.789 predicted gene 15513 [Source:MGI Symbol;Acc:MGI:3782961]
64. Rbfox1 ENSMUSG00000008658 758 0.788 - - - 0.788 - - RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224]
65. Esrp2 ENSMUSG00000084128 40 0.786 - - 0.786 - - - epithelial splicing regulatory protein 2 [Source:MGI Symbol;Acc:MGI:1924661]
66. Gm12892 ENSMUSG00000083679, ENSMUSG00000116060 11 0.785 0.785 - - - - - predicted gene 12892 [Source:MGI Symbol;Acc:MGI:3649649]
67. Per2 ENSMUSG00000055866 255 0.785 0.785 - - - - - period circadian clock 2 [Source:MGI Symbol;Acc:MGI:1195265]
68. Gm15566 ENSMUSG00000083772 81 0.784 - - 0.784 - - - predicted gene 15566 [Source:MGI Symbol;Acc:MGI:3783015]
69. 4931428F04Rik ENSMUSG00000014837 16 0.784 - - 0.784 - - - RIKEN cDNA 4931428F04 gene [Source:MGI Symbol;Acc:MGI:1921606]
70. Pappa2 ENSMUSG00000073530 104 0.784 - - - - - 0.784 pappalysin 2 [Source:MGI Symbol;Acc:MGI:3051647]
71. Gm13007 ENSMUSG00000083852 5 0.783 0.783 - - - - - predicted gene 13007 [Source:MGI Symbol;Acc:MGI:3649722]
72. Gm26690 ENSMUSG00000097751 7 0.783 0.783 - - - - - predicted gene, 26690 [Source:MGI Symbol;Acc:MGI:5477184]
73. Gm15596 ENSMUSG00000082289 95 0.783 - - - - - 0.783 predicted gene 15596 [Source:MGI Symbol;Acc:MGI:3783043]
74. Gm12278 ENSMUSG00000086310 5 0.783 0.783 - - - - - predicted gene 12278 [Source:MGI Symbol;Acc:MGI:3650383]
75. Pou4f3 ENSMUSG00000024497 58 0.783 - - - - - 0.783 POU domain, class 4, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102523]
76. Gm16305 ENSMUSG00000085361 7 0.783 0.783 - - - - - predicted gene 16305 [Source:MGI Symbol;Acc:MGI:3826519]
77. 4930577N17Rik ENSMUSG00000087440 9 0.783 0.783 - - - - - RIKEN cDNA 4930577N17 gene [Source:MGI Symbol;Acc:MGI:1914996]
78. Hist1h2bh ENSMUSG00000114456 25 0.783 0.783 - - - - - histone cluster 1, H2bh [Source:MGI Symbol;Acc:MGI:2448387]
79. Pabpn1l ENSMUSG00000069867 6 0.783 0.783 - - - - - poly(A)binding protein nuclear 1-like [Source:MGI Symbol;Acc:MGI:2685954]
80. Procr ENSMUSG00000027611 30 0.782 - - - - - 0.782 protein C receptor, endothelial [Source:MGI Symbol;Acc:MGI:104596]
81. Gm15682 ENSMUSG00000095524 18 0.782 - - - - - 0.782 predicted gene 15682 [Source:MGI Symbol;Acc:MGI:3783124]
82. Samd13 ENSMUSG00000048652 14 0.781 - - - - - 0.781 sterile alpha motif domain containing 13 [Source:MGI Symbol;Acc:MGI:2686498]
83. Hist4h4 ENSMUSG00000096010 62 0.78 - - 0.780 - - - histone cluster 4, H4 [Source:MGI Symbol;Acc:MGI:2448443]
84. Nefh ENSMUSG00000020396 31 0.779 0.779 - - - - - neurofilament, heavy polypeptide [Source:MGI Symbol;Acc:MGI:97309]
85. Hbq1b ENSMUSG00000073063 63 0.779 - - - - - 0.779 hemoglobin, theta 1B [Source:MGI Symbol;Acc:MGI:3613460]
86. Srsf4 ENSMUSG00000028911 20 0.778 0.778 - - - - - serine/arginine-rich splicing factor 4 [Source:MGI Symbol;Acc:MGI:1890577]
87. C1qtnf2 ENSMUSG00000046491 14 0.777 0.777 - - - - - C1q and tumor necrosis factor related protein 2 [Source:MGI Symbol;Acc:MGI:1916433]
88. Ebi3 ENSMUSG00000003206 34 0.776 0.776 - - - - - Epstein-Barr virus induced gene 3 [Source:MGI Symbol;Acc:MGI:1354171]
89. Srcin1 ENSMUSG00000038453 86 0.775 - - - - - 0.775 SRC kinase signaling inhibitor 1 [Source:MGI Symbol;Acc:MGI:1933179]
90. RP24-225I21.1 RP24-225I21.1 8 0.774 - - - 0.774 - -
91. Gm14121 ENSMUSG00000083325 4 0.774 - - - 0.774 - - predicted gene 14121 [Source:MGI Symbol;Acc:MGI:3651769]
92. Gm15727 ENSMUSG00000081274 6 0.774 - - - 0.774 - - predicted gene 15727 [Source:MGI Symbol;Acc:MGI:3783170]
93. Gm11787 ENSMUSG00000081660 1 0.774 - - - 0.774 - - predicted gene 11787 [Source:MGI Symbol;Acc:MGI:3702103]
94. 2900041M22Rik ENSMUSG00000054418 6 0.774 - - - 0.774 - - RIKEN cDNA 2900041M22 gene [Source:MGI Symbol;Acc:MGI:1925653]
95. Gm5083 ENSMUSG00000089815 11 0.774 0.774 - - - - - predicted gene 5083 [Source:MGI Symbol;Acc:MGI:3779454]
96. Sspo ENSMUSG00000029797 15 0.774 - - - 0.774 - - SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
97. Gm14080 Gm14080 7 0.774 - - - 0.774 - -
98. Gm9801 ENSMUSG00000045813 1 0.774 - - - 0.774 - - predicted gene 9801 [Source:MGI Symbol;Acc:MGI:3647139]
99. Gm23297 ENSMUSG00000065118 3 0.774 - - - 0.774 - - predicted gene, 23297 [Source:MGI Symbol;Acc:MGI:5453074]
100. Gm15719 ENSMUSG00000081242 2 0.774 - - - 0.774 - - predicted gene 15719 [Source:MGI Symbol;Acc:MGI:3783161]

There are 142 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA