Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SYNE3

Gene Name Gene ID Reads Annotation
SYNE3 ENSGALG00000011076 22 spectrin repeat containing nuclear envelope family member 3 [Source:HGNC Symbol;Acc:HGNC:19861]











Genes with expression patterns similar to SYNE3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SYNE3 ENSGALG00000011076 22 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 spectrin repeat containing nuclear envelope family member 3 [Source:HGNC Symbol;Acc:HGNC:19861]
2. CYP39A1 ENSGALG00000016710 16 1.621 - - - - 0.744 - - 0.877 - - cytochrome P450 family 39 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:17449]
3. EPAS1 ENSGALG00000010005 14 1.615 - - - - - 0.825 - 0.790 - - endothelial PAS domain protein 1 [Source:NCBI gene;Acc:395596]
4. NSD1 ENSGALG00000002971 268 1.596 - - - - 0.744 - - 0.852 - - nuclear receptor binding SET domain protein 1 [Source:HGNC Symbol;Acc:HGNC:14234]
5. MYH7B ENSGALG00000030985 199 1.42 - - - - - 0.711 - - - 0.709 Gallus gallus myosin, heavy chain 7B, cardiac muscle, beta (MYH7B), mRNA. [Source:RefSeq mRNA;Acc:NM_204587]
6. PCDHA11 58 1 - - - - - 1.000 - - - - protocadherin alpha 11
7. PDE8A ENSGALG00000005992 10 0.963 - - - - - 0.963 - - - - phosphodiesterase 8A [Source:HGNC Symbol;Acc:HGNC:8793]
8. PTPN13 ENSGALG00000011078 62 0.962 - - - - - 0.962 - - - - protein tyrosine phosphatase, non-receptor type 13, transcript variant X7
9. NMUR1 ENSGALG00000007714 32 0.951 - - - - - - - - - 0.951 Gallus gallus neuromedin U receptor 1 (NMUR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001318436]
10. DET1 ENSGALG00000006750 1 0.951 - - - - - - - - - 0.951 de-etiolated homolog 1 (Arabidopsis), transcript variant X6
11. uc_2 uc_2 3 0.951 - - - - - - - - - 0.951
12. MTMR9LP ENSGALG00000003313 64 0.946 - - - - - 0.946 - - - - myotubularin related protein 9-like, pseudogene, transcript variant X3
13. NOX4 ENSGALG00000017235 67 0.94 - - - - - - 0.940 - - - NADPH oxidase 4 [Source:NCBI gene;Acc:419012]
14. SEPN1 SEPN1 58 0.92 - - - - - 0.920 - - - -
15. PABPC4 ENSGALG00000003800 199 0.92 - - - - - - - 0.920 - - poly(A) binding protein cytoplasmic 4 [Source:HGNC Symbol;Acc:HGNC:8557]
16. INHBA ENSGALG00000034616 49 0.916 - - - - - - 0.916 - - - inhibin subunit beta A [Source:NCBI gene;Acc:396361]
17. DD1 DD1 4 0.914 - - - - - - - - - 0.914
18. MUSK ENSGALG00000015728 7 0.914 - - - - - - - - - 0.914 muscle associated receptor tyrosine kinase [Source:NCBI gene;Acc:373897]
19. SNX19 ENSGALG00000001425 2 0.914 - - - - - - - - - 0.914 sorting nexin 19 [Source:HGNC Symbol;Acc:HGNC:21532]
20. CTLA4 ENSGALG00000008666 5 0.914 - - - - - - - - - 0.914 cytotoxic T-lymphocyte associated protein 4 [Source:NCBI gene;Acc:424106]
21. CTRB2 ENSGALG00000000038 6 0.914 - - - - - - - - - 0.914 chymotrypsinogen B2 [Source:NCBI gene;Acc:431235]
22. B3GALNT1 1 0.914 - - - - - - - - - 0.914 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group), transcript variant X14
23. ZFYVE21 ENSGALG00000011534 7 0.914 - - - - - - - - - 0.914 zinc finger FYVE-type containing 21 [Source:NCBI gene;Acc:423486]
24. RASGEF1C ENSGALG00000006076 1 0.914 - - - - - - - - - 0.914 RasGEF domain family member 1C [Source:NCBI gene;Acc:416296]
25. SNORD98 SNORD98 1 0.914 - - - - - - - - - 0.914
26. SPEG ENSGALG00000043198 2 0.914 - - - - - - - - - 0.914 SPEG complex locus, transcript variant X12
27. MTMR3 ENSGALG00000008051 9 0.914 - - - - - - - - - 0.914 myotubularin related protein 3 [Source:NCBI gene;Acc:417015]
28. RBP3 ENSGALG00000005978 1 0.914 - - - - - - - - - 0.914 retinol binding protein 3 [Source:NCBI gene;Acc:395553]
29. TEKT3 ENSGALG00000001348 13 0.914 - - - - - - - - - 0.914 tektin 3 [Source:HGNC Symbol;Acc:HGNC:14293]
30. NR0B2 ENSGALG00000000887 2 0.914 - - - - - - - - - 0.914 nuclear receptor subfamily 0 group B member 2 [Source:NCBI gene;Acc:768353]
31. MTMR11 ENSGALG00000035923 1 0.914 - - - - - - - - - 0.914 myotubularin related protein 11 [Source:HGNC Symbol;Acc:HGNC:24307]
32. NR3C1 ENSGALG00000032992 4 0.914 - - - - - - - - - 0.914 nuclear receptor subfamily 3 group C member 1 [Source:NCBI gene;Acc:416343]
33. AGTR2 ENSGALG00000005936 3 0.914 - - - - - - - - - 0.914 angiotensin II receptor type 2 [Source:HGNC Symbol;Acc:HGNC:338]
34. MFSD4 MFSD4 1 0.914 - - - - - - - - - 0.914
35. CREB3L3 ENSGALG00000001252 1 0.914 - - - - - - - - - 0.914 cAMP responsive element binding protein 3 like 3 [Source:HGNC Symbol;Acc:HGNC:18855]
36. ATP6V1A ENSGALG00000014800 4 0.914 - - - - - - - - - 0.914 ATPase H+ transporting V1 subunit A [Source:NCBI gene;Acc:395821]
37. GPRIN2 ENSGALG00000002048 17 0.914 - - - - - - - - - 0.914 G protein regulated inducer of neurite outgrowth 2 [Source:NCBI gene;Acc:395648]
38. ENSGALG00000023054 ENSGALG00000023054 1 0.914 - - - - - - - - - 0.914
39. B9D1 ENSGALG00000005096 760 0.914 - - - - - - - - - 0.914 B9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24123]
40. SCMH1 ENSGALG00000000672 3 0.914 - - - - - - - - - 0.914 Scm polycomb group protein homolog 1 [Source:HGNC Symbol;Acc:HGNC:19003]
41. ENSGALG00000028269 ENSGALG00000028269 1 0.914 - - - - - - - - - 0.914
42. CDK5R2 ENSGALG00000025729 1 0.914 - - - - - - - - - 0.914 cyclin dependent kinase 5 regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:1776]
43. ENSGALG00000027704 ENSGALG00000027704 2 0.914 - - - - - - - - - 0.914
44. SS4R SS4R 19 0.914 - - - - - - - - - 0.914
45. IL1R2 ENSGALG00000046326 1 0.914 - - - - - - - - - 0.914 interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]
46. ENSGALG00000029052 ENSGALG00000029052 1 0.914 - - - - - - - - - 0.914
47. LOC769668 ENSGALG00000021450 31 0.914 - - - - - - - - - 0.914 estradiol 17-beta-dehydrogenase 2-like
48. FEV ENSGALG00000026698 216 0.914 - - - - - - - - - 0.914 FEV, ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:18562]
49. HEPHL1 ENSGALG00000043027 14 0.914 - - - - - - - - - 0.914 hephaestin like 1 [Source:HGNC Symbol;Acc:HGNC:30477]
50. EVI2A ENSGALG00000039084 13 0.905 - - - - 0.905 - - - - - ecotropic viral integration site 2A [Source:NCBI gene;Acc:776037]
51. KIF7 ENSGALG00000006611 33 0.902 - - - - - - - 0.902 - - kinesin family member 7 [Source:HGNC Symbol;Acc:HGNC:30497]
52. MEIG1 ENSGALG00000000451 12 0.89 - - - - - - - 0.890 - - meiosis/spermiogenesis associated 1 [Source:NCBI gene;Acc:769589]
53. PRIMA1 ENSGALG00000020392 13 0.89 - - - - - - - 0.890 - - proline rich membrane anchor 1 [Source:NCBI gene;Acc:772317]
54. ST6GALNAC2L ENSGALG00000006900 85 0.888 - - - - - 0.888 - - - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like, transcript variant X3
55. MTMR1 ENSGALG00000009085 9 0.879 - - - - - - - - - 0.879 myotubularin related protein 1 [Source:HGNC Symbol;Acc:HGNC:7449]
56. Y Y 51 0.877 - - - - - - - 0.877 - -
57. KCNJ9 ENSGALG00000009935 69 0.865 - - - - - - - - - 0.865 potassium inwardly-rectifying channel, subfamily J, member 9
58. AP4S1 ENSGALG00000009936 55 0.847 - - - - - - - - - 0.847 adaptor related protein complex 4 subunit sigma 1 [Source:HGNC Symbol;Acc:HGNC:575]
59. SNX25 ENSGALG00000010610 31 0.84 - - - - 0.840 - - - - - sorting nexin 25 [Source:HGNC Symbol;Acc:HGNC:21883]
60. CALB2 ENSGALG00000026903 32 0.839 - - - - - - - - - 0.839 calbindin 2 [Source:NCBI gene;Acc:396255]
61. C9orf171 C9orf171 35 0.832 - - - - - - - 0.832 - -
62. USP31 ENSGALG00000006286 28 0.831 - - - 0.831 - - - - - - ubiquitin specific peptidase 31 [Source:HGNC Symbol;Acc:HGNC:20060]
63. CRYGS ENSGALG00000006574 9 0.831 - - - - 0.831 - - - - - crystallin gamma S [Source:NCBI gene;Acc:429134]
64. COL17A1 ENSGALG00000029617 167 0.826 - - - - - - - 0.826 - - collagen type XVII alpha 1 chain [Source:NCBI gene;Acc:396503]
65. ZDHHC18 ENSGALG00000034910 16 0.825 - - - - - 0.825 - - - - zinc finger, DHHC-type containing 18 [Source:NCBI gene;Acc:419575]
66. LOC771066 ENSGALG00000026964 1 0.825 - - - - - 0.825 - - - - claw keratin-like, transcript variant X1
67. C4A ENSGALG00000017040 5 0.825 - - - - - 0.825 - - - - complement C4A (Rodgers blood group), transcript variant X2
68. TDRD6 48 0.825 - - - - - 0.825 - - - - tudor domain containing 6
69. SPTSSBL ENSGALG00000026131 70 0.825 - - - - - 0.825 - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
70. SGSM1 ENSGALG00000005379 10 0.825 - - - - - 0.825 - - - - small G protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:29410]
71. FAM53B ENSGALG00000009718 1 0.825 - - - - - 0.825 - - - - family with sequence similarity 53 member B [Source:HGNC Symbol;Acc:HGNC:28968]
72. RBP7 ENSGALG00000002637 11 0.825 - - - - - 0.825 - - - - retinol binding protein 7 [Source:HGNC Symbol;Acc:HGNC:30316]
73. SRSF2 ENSGALG00000017357 180 0.825 - - - - - 0.825 - - - - serine and arginine rich splicing factor 2 [Source:NCBI gene;Acc:396195]
74. UGP2 ENSGALG00000008855 20 0.825 - - - - - 0.825 - - - - UDP-glucose pyrophosphorylase 2 [Source:NCBI gene;Acc:373900]
75. IGFBP1 ENSGALG00000043493 68 0.825 - - - - - 0.825 - - - - insulin like growth factor binding protein 1 [Source:NCBI gene;Acc:408027]
76. C1R ENSGALG00000014659 9 0.825 - - - - - 0.825 - - - - complement C1r [Source:HGNC Symbol;Acc:HGNC:1246]
77. TBC1D13 ENSGALG00000004645 1 0.825 - - - - - 0.825 - - - - TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
78. RRP8 109 0.825 - - - - - 0.825 - - - - ribosomal RNA processing 8, methyltransferase, homolog (yeast), transcript variant X2
79. ZNF366 ENSGALG00000015008 189 0.825 - - - - - 0.825 - - - - zinc finger protein 366 [Source:HGNC Symbol;Acc:HGNC:18316]
80. SULT1C SULT1C 118 0.825 - - - - - 0.825 - - - -
81. ENSGALG00000022792 ENSGALG00000022792 2 0.825 - - - - - 0.825 - - - -
82. ESPN ENSGALG00000000645 2 0.825 - - - - - 0.825 - - - - espin [Source:HGNC Symbol;Acc:HGNC:13281]
83. ENSGALG00000004119 ENSGALG00000004119 1 0.825 - - - - - 0.825 - - - -
84. OLAH ENSGALG00000043833 3 0.825 - - - - - 0.825 - - - - oleoyl-ACP hydrolase [Source:HGNC Symbol;Acc:HGNC:25625]
85. PKP3 ENSGALG00000004260 3 0.825 - - - - - 0.825 - - - - plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
86. OTC ENSGALG00000016254 6 0.825 - - - - - 0.825 - - - - ornithine carbamoyltransferase [Source:NCBI gene;Acc:395735]
87. LOXL4 ENSGALG00000013090 9 0.825 - - - - - 0.825 - - - - lysyl oxidase like 4 [Source:HGNC Symbol;Acc:HGNC:17171]
88. FRY ENSGALG00000017075 8 0.825 - - - - - 0.825 - - - - FRY microtubule binding protein [Source:HGNC Symbol;Acc:HGNC:20367]
89. CD200L ENSGALG00000015395 14 0.825 - - - - - 0.825 - - - - CD200 molecule-like [Source:NCBI gene;Acc:418424]
90. VSTM2L ENSGALG00000006792 11 0.825 - - - - - 0.825 - - - - V-set and transmembrane domain containing 2 like [Source:HGNC Symbol;Acc:HGNC:16096]
91. SGPP2 ENSGALG00000005245 20 0.825 - - - - - 0.825 - - - - sphingosine-1-phosphate phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:19953]
92. RAB11FIP1 41 0.825 - - - - - - - 0.825 - - RAB11 family interacting protein 1, transcript variant X2
93. TREM-B1 ENSGALG00000003361 8 0.825 - - - - - 0.825 - - - - triggering receptor expressed on myeloid cells B1 [Source:NCBI gene;Acc:768535]
94. CLDN4 2 0.825 - - - - - 0.825 - - - - claudin 4
95. SLC26A2 ENSGALG00000001239 3 0.825 - - - - - 0.825 - - - - solute carrier family 26 member 2 [Source:HGNC Symbol;Acc:HGNC:10994]
96. CLCNKB ENSGALG00000003713 27 0.825 - - - - - 0.825 - - - - chloride voltage-gated channel Kb, transcript variant X3
97. C1orf131 C1orf131 141 0.818 - - - - - - - 0.818 - -
98. CCR7 ENSGALG00000035733 37 0.817 - - - - - - - 0.817 - - C-C motif chemokine receptor 7 [Source:NCBI gene;Acc:428315]
99. ENSGALG00000025727 ENSGALG00000025727 26 0.817 - - - - - 0.817 - - - -
100. SIAH3 ENSGALG00000026849 384 0.814 - - - - - - 0.814 - - - siah E3 ubiquitin protein ligase family member 3 [Source:HGNC Symbol;Acc:HGNC:30553]

There are 119 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA