Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SYNE1

Gene Name Gene ID Reads Annotation
SYNE1 ENSGALG00000013505 2324 spectrin repeat containing, nuclear envelope 1, transcript variant X3











Genes with expression patterns similar to SYNE1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SYNE1 ENSGALG00000013505 2324 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 spectrin repeat containing, nuclear envelope 1, transcript variant X3
2. BRF1 ENSGALG00000011705 3406 1.878 - - 0.883 - 0.995 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
3. RALGDS ENSGALG00000003412 4478 1.833 - - 0.847 - 0.986 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
4. SNX14 ENSGALG00000015831 2554 1.79 - - 0.800 - 0.990 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
5. PITHD1 ENSGALG00000003986 11470 1.786 - - - - 0.994 - - 0.792 - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
6. WDR92 ENSGALG00000008760 3934 1.752 - - 0.766 - 0.986 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
7. SEPHS1 ENSGALG00000014575 10701 1.748 - - 0.792 - 0.956 - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
8. TIMMDC1 ENSGALG00000024480 9337 1.709 - - 0.725 - 0.984 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
9. STARD3NL ENSGALG00000033038 4851 1.696 - - 0.707 - 0.989 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
10. PTDSS2 ENSGALG00000004300 682 1.675 - - 0.814 - - - - 0.861 - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
11. GLB1L2 ENSGALG00000001604 4057 1.672 - - 0.857 - - - - 0.815 - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
12. MAPRE3 ENSGALG00000031726 191 1.615 - - 0.838 - - - - - 0.777 - microtubule associated protein RP/EB family member 3 [Source:HGNC Symbol;Acc:HGNC:6892]
13. SLK ENSGALG00000008318 2220 1.601 - - 0.826 - - - 0.775 - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
14. SLC3A1 ENSGALG00000009973 608 1.583 - - 0.820 - - - - 0.763 - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
15. ZNF335 ENSGALG00000041370 4740 1.566 - - 0.765 - - - - 0.801 - - zinc finger protein 335 [Source:NCBI gene;Acc:396131]
16. BTG2 ENSGALG00000026858 6716 1.559 - - - - - - 0.744 0.815 - - BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]
17. ELOVL5 ENSGALG00000016314 18163 1.552 - - 0.739 - 0.813 - - - - - ELOVL fatty acid elongase 5 [Source:NCBI gene;Acc:428646]
18. ENSGALG00000026913 ENSGALG00000026913 12 1.548 - - - - - 0.702 - 0.846 - -
19. ERCC3 ENSGALG00000011515 3133 1.509 - - 0.795 - - - 0.714 - - - ERCC excision repair 3, TFIIH core complex helicase subunit [Source:NCBI gene;Acc:424226]
20. ANKRD9 ENSGALG00000011376 525 0.996 - - - - 0.996 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
21. PREP2 PREP2 238 0.996 - - - - 0.996 - - - - -
22. PRDM4 ENSGALG00000012619 876 0.996 - - - - 0.996 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
23. SMG7 ENSGALG00000004667 707 0.996 - - - - 0.996 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
24. RAMP3 ENSGALG00000037246 1187 0.996 - - - - 0.996 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
25. GTF2H1 ENSGALG00000042340 1553 0.995 - - - - 0.995 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
26. PTK2B ENSGALG00000016564 406 0.995 - - - - 0.995 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
27. NDUFV1 ENSGALG00000042809 6222 0.995 - - - - 0.995 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
28. MED8 ENSGALG00000009993 3095 0.995 - - - - 0.995 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
29. RBM6 ENSGALG00000035578 1690 0.995 - - - - 0.995 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
30. SDCBP ENSGALG00000015436 1228 0.995 - - - - 0.995 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
31. LZIC ENSGALG00000002616 9052 0.995 - - - - 0.995 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
32. ETS1 ENSGALG00000001143 7284 0.994 - - - - 0.994 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
33. SAP30 ENSGALG00000036252 2032 0.994 - - - - 0.994 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
34. YARS ENSGALG00000003563 11093 0.994 - - - - 0.994 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
35. BAHD1 ENSGALG00000033675 1779 0.993 - - - - 0.993 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
36. ASAP2 ENSGALG00000016419 1393 0.993 - - - - 0.993 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
37. MRPL16 ENSGALG00000029419 8033 0.992 - - - - 0.992 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
38. ENSGALG00000006569 ENSGALG00000006569 2169 0.992 - - - - 0.992 - - - - -
39. FNDC5 ENSGALG00000003567 3328 0.991 - - - - 0.991 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
40. PHTF1 ENSGALG00000001845 3276 0.991 - - - - 0.991 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
41. TMF1 ENSGALG00000013408 3344 0.991 - - - - 0.991 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
42. IARS2 ENSGALG00000009566 4599 0.991 - - - - 0.991 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
43. RBM34 ENSGALG00000029915 5618 0.991 - - - - 0.991 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
44. DGKZ ENSGALG00000008380 5389 0.99 - - - - 0.990 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
45. RAD54B ENSGALG00000043597 1699 0.99 - - - - 0.990 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
46. EDNRA ENSGALG00000010013 2472 0.99 - - - - 0.990 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
47. HSF2 ENSGALG00000038420 5259 0.99 - - - - 0.990 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
48. C9orf85 ENSGALG00000026001 4110 0.989 - - - - 0.989 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
49. DLL1 ENSGALG00000011182 1613 0.989 - - - - 0.989 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
50. CDKN1B ENSGALG00000022980 4606 0.988 - - - - 0.988 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
51. KIF11 ENSGALG00000030597 5528 0.988 - - - - 0.988 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
52. COQ5 ENSGALG00000007185 5614 0.988 - - - - 0.988 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
53. MED21 ENSGALG00000027435 5766 0.987 - - - - 0.987 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
54. ENSGALG00000027854 ENSGALG00000027854 5007 0.986 - - - - 0.986 - - - - -
55. LMAN2 ENSGALG00000033232 11740 0.985 - - - - 0.985 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
56. MEF2BNB MEF2BNB 5578 0.984 - - - - 0.984 - - - - -
57. LOC426385 ENSGALG00000026301 2703 0.984 - - - - 0.984 - - - - - serine/threonine kinase 35-like, transcript variant X2
58. SFXN5 ENSGALG00000016094 2678 0.983 - - - - 0.983 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
59. TSPO2 ENSGALG00000003212 5141 0.982 - - - - 0.982 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
60. PBRM1 ENSGALG00000037455 6450 0.982 - - - - 0.982 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
61. MARC1 ENSGALG00000009453 5675 0.981 - - - - 0.981 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
62. FUNDC2 ENSGALG00000029585 9334 0.98 - - - - 0.980 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
63. SH3BGR ENSGALG00000016127 2561 0.98 - - - - 0.980 - - - - - SH3 domain binding glutamate rich protein
64. UTP6 ENSGALG00000003260 4909 0.979 - - - - 0.979 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
65. HARS ENSGALG00000035080 11602 0.979 - - - - 0.979 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
66. PSMG3 ENSGALG00000004203 11240 0.979 - - - - 0.979 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
67. CDH3 5050 0.977 - - - - 0.977 - - - - - cadherin 3
68. LGMN ENSGALG00000010811 7401 0.976 - - - - 0.976 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
69. RHOT1 ENSGALG00000003397 5149 0.976 - - - - 0.976 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
70. CCDC132 CCDC132 2632 0.975 - - - - 0.975 - - - - -
71. WNK2 ENSGALG00000038850 4712 0.974 - - - - 0.974 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
72. MYBL2 ENSGALG00000003503 15875 0.974 - - - - 0.974 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
73. CDCA7 ENSGALG00000040833 7484 0.974 - - - - 0.974 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
74. UPF3B ENSGALG00000008618 12350 0.973 - - - - 0.973 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
75. DLD ENSGALG00000007931 11011 0.973 - - - - 0.973 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
76. PSMD3 ENSGALG00000033162 25615 0.973 - - - - 0.973 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
77. MYO9A ENSGALG00000033618 4505 0.971 - - - - 0.971 - - - - - myosin IXA, transcript variant X10
78. ACAT2 ENSGALG00000011659 12825 0.97 - - - - 0.970 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
79. NEK6 ENSGALG00000001118 20333 0.97 - - - - 0.970 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
80. LGALS1 ENSGALG00000012420 13993 0.968 - - - - 0.968 - - - - - galectin 1 [Source:NCBI gene;Acc:396491]
81. TAF3 ENSGALG00000006731 15569 0.968 - - - - 0.968 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
82. GATC ENSGALG00000007195 8610 0.967 - - - - 0.967 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
83. SLMO2 SLMO2 9207 0.967 - - - - 0.967 - - - - -
84. ZC3H6 ENSGALG00000008269 10353 0.967 - - - - 0.967 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
85. SLC30A4 ENSGALG00000005703 5696 0.967 - - - - 0.967 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
86. NUP88 ENSGALG00000032280 9847 0.966 - - - - 0.966 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
87. DENR ENSGALG00000003795 30805 0.966 - - - - 0.966 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
88. PRCC ENSGALG00000040696 9346 0.966 - - - - 0.966 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
89. SPRED1 ENSGALG00000028203 6520 0.965 - - - - 0.965 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
90. SPEN ENSGALG00000036932 9688 0.964 - - - - 0.964 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
91. SRGAP1 ENSGALG00000009825 6753 0.96 - - - - 0.960 - - - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
92. ZYX ENSGALG00000014688 8686 0.96 - - - - 0.960 - - - - - zyxin [Source:NCBI gene;Acc:418300]
93. TM9SF3 ENSGALG00000005534 15290 0.959 - - - - 0.959 - - - - - transmembrane 9 superfamily member 3
94. SRP19 ENSGALG00000000218 14207 0.958 - - - - 0.958 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
95. Mar-05 Mar-05 6330 0.956 - - - - 0.956 - - - - -
96. BHMT ENSGALG00000004518 4700 0.956 - - - - 0.956 - - - - - betaine--homocysteine S-methyltransferase
97. HDAC8 ENSGALG00000004825 12066 0.955 - - - - 0.955 - - - - - histone deacetylase 8, transcript variant X2
98. PRKCI ENSGALG00000009364 11574 0.954 - - - - 0.954 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
99. VMA21 ENSGALG00000009065 6432 0.952 - - - - 0.952 - - - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
100. PSMC1 ENSGALG00000010675 20633 0.949 - - - - 0.949 - - - - - proteasome 26S subunit, ATPase 1 [Source:NCBI gene;Acc:395804]

There are 636 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA