Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SYNCRIP

Gene Name Gene ID Reads Annotation
SYNCRIP ENSGALG00000015830 30555 synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]











Genes with expression patterns similar to SYNCRIP

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SYNCRIP ENSGALG00000015830 30555 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
2. RHOT1 ENSGALG00000003397 5149 2.3 - - 0.744 - 0.718 - - - - 0.838 ras homolog family member T1 [Source:NCBI gene;Acc:417410]
3. C-MET C-MET 1650 1.801 - - 0.886 - - - 0.915 - - -
4. LARS ENSGALG00000007494 13966 1.771 - - 0.805 - - - 0.966 - - - leucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:6512]
5. TRIM37 ENSGALG00000005084 4036 1.766 - - 0.849 - - - 0.917 - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
6. NLGN1 ENSGALG00000040938 651 1.761 - - 0.887 - - - - - - 0.874 neuroligin 1 [Source:NCBI gene;Acc:424980]
7. ZNF395 ENSGALG00000034140 1868 1.745 - - 0.863 - - - - - - 0.882 zinc finger protein 395 [Source:HGNC Symbol;Acc:HGNC:18737]
8. TMEM9B ENSGALG00000005908 14074 1.712 - - - - - - 0.930 - - 0.782 TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
9. ERI1 ENSGALG00000011448 3236 1.695 - - 0.849 - - - - - - 0.846 exoribonuclease 1 [Source:NCBI gene;Acc:422629]
10. FRMD3 ENSGALG00000012577 999 1.686 - - 0.867 - - - - - - 0.819 FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
11. TMEM128 ENSGALG00000014992 6567 1.678 - - 0.841 - - - - - - 0.837 transmembrane protein 128 [Source:NCBI gene;Acc:422845]
12. CCT8 ENSGALG00000015821 12161 1.659 - - 0.863 - - - - - - 0.796 chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
13. RBM5 30998 1.645 - - 0.825 - - - - - - 0.820 RNA binding motif protein 5, transcript variant X1
14. CLTA ENSGALG00000015326 26867 1.642 - - 0.724 - 0.918 - - - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
15. SDCBP ENSGALG00000015436 1228 1.641 - - 0.906 - 0.735 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
16. RPL22 ENSGALG00000000719 74238 1.63 - - 0.797 - - - - - - 0.833 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
17. KIAA1551 ENSGALG00000045168 3435 1.623 - - 0.780 - - - - - - 0.843 KIAA1551, transcript variant X1
18. LZIC ENSGALG00000002616 9052 1.602 - - 0.870 - 0.732 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
19. B3GALTL B3GALTL 4128 1.594 - - 0.793 - - - - - - 0.801
20. CTSO ENSGALG00000009373 4186 1.556 - - 0.809 - - - - - - 0.747 cathepsin O [Source:NCBI gene;Acc:422410]
21. KIF11 ENSGALG00000030597 5528 1.556 - - - - 0.730 - - - - 0.826 kinesin family member 11 [Source:NCBI gene;Acc:423809]
22. NARS ENSGALG00000040506 9506 1.555 - - - - 0.700 - - - - 0.855 asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
23. PRDM4 ENSGALG00000012619 876 1.549 - - - - 0.731 - - - - 0.818 PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
24. ASAP2 ENSGALG00000016419 1393 1.544 - - - - 0.735 - - - - 0.809 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
25. SEC14L1 ENSGALG00000001684 2776 1.542 - - 0.733 - - - - - - 0.809 SEC14 like lipid binding 1 [Source:HGNC Symbol;Acc:HGNC:10698]
26. ALDH7A1 ENSGALG00000008229 5891 1.507 - - 0.778 - - - - - - 0.729 aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
27. LOC426385 ENSGALG00000026301 2703 1.505 - - - - 0.734 - - - - 0.771 serine/threonine kinase 35-like, transcript variant X2
28. YAF2 ENSGALG00000009540 8452 1.498 - - 0.715 - - - - - - 0.783 YY1 associated factor 2 [Source:NCBI gene;Acc:417790]
29. PBRM1 ENSGALG00000037455 6450 1.465 - - - - 0.730 - - - - 0.735 polybromo 1 [Source:NCBI gene;Acc:396074]
30. ARL13B ENSGALG00000015412 2968 1.454 - - 0.713 - - - - - - 0.741 ADP ribosylation factor like GTPase 13B [Source:HGNC Symbol;Acc:HGNC:25419]
31. LGALS1 ENSGALG00000012420 13993 1.451 - - - - 0.703 - - - - 0.748 galectin 1 [Source:NCBI gene;Acc:396491]
32. RDX ENSGALG00000017153 6734 1.437 - - 0.717 - - - - - - 0.720 radixin [Source:NCBI gene;Acc:395511]
33. STK3 ENSGALG00000032850 6339 0.952 - - - - - - 0.952 - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
34. GNB2L1 ENSGALG00000000122 194871 0.946 - - - - - - 0.946 - - - receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
35. NOL9 ENSGALG00000028958 23978 0.937 - - - - - - 0.937 - - - nucleolar protein 9 [Source:HGNC Symbol;Acc:HGNC:26265]
36. NAA15 ENSGALG00000009782 18563 0.937 - - - - - - 0.937 - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
37. MTF2 ENSGALG00000043087 15225 0.935 - - - - - - 0.935 - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
38. SRSF7 ENSGALG00000033120 43444 0.933 - - - - - - 0.933 - - - serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:426265]
39. BTG1 ENSGALG00000011276 17496 0.933 - - - - - - 0.933 - - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
40. SSR1 ENSGALG00000012798 62626 0.932 - - - - - - 0.932 - - - signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
41. PPP1R8 ENSGALG00000000729 11797 0.931 - - - - - - 0.931 - - - protein phosphatase 1 regulatory subunit 8 [Source:NCBI gene;Acc:419564]
42. GFPT1 ENSGALG00000036391 14025 0.931 - - - - - - 0.931 - - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
43. PCNA ENSGALG00000029292 19163 0.931 - - - - - - 0.931 - - - proliferating cell nuclear antigen [Source:NCBI gene;Acc:373984]
44. EIF5B ENSGALG00000016764 30681 0.929 - - - - - - 0.929 - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
45. LSM5 ENSGALG00000041625 22307 0.928 - - - - 0.928 - - - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
46. STT3B ENSGALG00000011465 11939 0.928 - - - - - - 0.928 - - - STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:NCBI gene;Acc:428444]
47. GAS41 GAS41 9941 0.927 - - - - - - 0.927 - - -
48. WBSCR17 581 0.927 - - 0.927 - - - - - - - Williams-Beuren syndrome chromosome region 17, transcript variant X1
49. SF3A1 ENSGALG00000007937 11716 0.927 - - - - - - 0.927 - - - splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]
50. PLEKHG5 ENSGALG00000027476 42 0.926 - - 0.926 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
51. LPHN2 LPHN2 16507 0.926 - - - - - - 0.926 - - -
52. GRIK3 ENSGALG00000002098 111 0.926 - - 0.926 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
53. POMC ENSGALG00000016600 99 0.926 - - 0.926 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
54. RHOC ENSGALG00000001569 53 0.926 - - 0.926 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
55. SAMM50 ENSGALG00000014194 20437 0.925 - - - - - - 0.925 - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
56. MGMT ENSGALG00000042949 53 0.924 - - 0.924 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
57. DLX5 ENSGALG00000009129 1395 0.924 - - 0.924 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
58. USP34 ENSGALG00000004455 6667 0.924 - - - - - - 0.924 - - - ubiquitin specific peptidase 34 [Source:NCBI gene;Acc:421193]
59. TLE4 TLE4 7278 0.923 - - - - - - 0.923 - - -
60. RAB3B ENSGALG00000010567 894 0.923 - - 0.923 - - - - - - - RAB3B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9778]
61. KIAA0195 KIAA0195 48 0.923 - - 0.923 - - - - - - -
62. FKBP9 ENSGALG00000037669 12079 0.923 - - - - - - 0.923 - - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
63. FAM206A ENSGALG00000019524 7170 0.923 - - - - - - 0.923 - - - family with sequence similarity 206 member A [Source:NCBI gene;Acc:420983]
64. WDR33 ENSGALG00000002043 6340 0.922 - - - - - - 0.922 - - - WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
65. CASC4 ENSGALG00000008208 8338 0.922 - - - - - - 0.922 - - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
66. ENSGALG00000023180 ENSGALG00000023180 83 0.922 - - 0.922 - - - - - - -
67. FBXO34 ENSGALG00000032563 656 0.921 - - 0.921 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
68. NSF ENSGALG00000001055 7399 0.921 - - - - - - 0.921 - - - N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:NCBI gene;Acc:419972]
69. CCDC47 ENSGALG00000000564 6584 0.921 - - - - - - 0.921 - - - coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:HGNC:24856]
70. LYPD6B ENSGALG00000028759 831 0.921 - - 0.921 - - - - - - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
71. SH2D3C ENSGALG00000005036 5101 0.921 - - - - - - 0.921 - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
72. PPP1CB ENSGALG00000010026 6909 0.92 - - - - - - 0.920 - - - protein phosphatase 1 catalytic subunit beta [Source:NCBI gene;Acc:396019]
73. BID ENSGALG00000013039 12427 0.92 - - - - - - 0.920 - - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
74. MT1 MT1 218 0.92 - - 0.920 - - - - - - -
75. VPS41 ENSGALG00000031635 4391 0.919 - - - - - - 0.919 - - - VPS41, HOPS complex subunit [Source:NCBI gene;Acc:420762]
76. ODZ3 ODZ3 2213 0.918 - - - - - - - - - 0.918
77. POGZ ENSGALG00000036365 4056 0.918 - - - - - - 0.918 - - - pogo transposable element with ZNF domain, transcript variant X2
78. TSEN2 ENSGALG00000004981 1929 0.918 - - 0.918 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
79. INTS9 ENSGALG00000016631 742 0.918 - - 0.918 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
80. ZCCHC17 ENSGALG00000000618 5163 0.918 - - - - - - 0.918 - - - zinc finger CCHC-type containing 17 [Source:NCBI gene;Acc:404295]
81. HOXB3 ENSGALG00000043219 5198 0.917 - - - - - - 0.917 - - - homeobox B3 [Source:NCBI gene;Acc:395502]
82. ADAMTS2 ENSGALG00000032974 141 0.917 - - 0.917 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
83. LGALS3 ENSGALG00000012173 3306 0.917 - - 0.917 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
84. TMEM200C ENSGALG00000030210 1434 0.916 - - 0.916 - - - - - - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
85. GTF2I ENSGALG00000021665 6812 0.916 - - - - - - 0.916 - - - general transcription factor IIi [Source:HGNC Symbol;Acc:HGNC:4659]
86. RARRES2 ENSGALG00000042642 3043 0.916 - - - - - - 0.916 - - - retinoic acid receptor responder (tazarotene induced) 2 [Source:NCBI gene;Acc:420366]
87. SLC9A3R2 ENSGALG00000005608 4220 0.915 - - - - - - 0.915 - - - SLC9A3 regulator 2 [Source:HGNC Symbol;Acc:HGNC:11076]
88. ZNF423 ENSGALG00000003891 103 0.915 - - 0.915 - - - - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
89. SORCS1 ENSGALG00000008465 468 0.915 - - 0.915 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
90. C5H14ORF166 C5H14ORF166 24176 0.915 - - 0.915 - - - - - - -
91. FAAH ENSGALG00000010433 3309 0.915 - - - - - - 0.915 - - - fatty acid amide hydrolase [Source:HGNC Symbol;Acc:HGNC:3553]
92. GOLGA2 ENSGALG00000004881 677 0.914 - - 0.914 - - - - - - - golgin A2, transcript variant X7
93. PTPN5 ENSGALG00000006368 440 0.913 - - 0.913 - - - - - - - protein tyrosine phosphatase, non-receptor type 5 [Source:HGNC Symbol;Acc:HGNC:9657]
94. YLPM1 671 0.913 - - 0.913 - - - - - - - YLP motif containing 1
95. CASP1 ENSGALG00000001049 1067 0.913 - - 0.913 - - - - - - - caspase 1, transcript variant X2
96. PDCD4 ENSGALG00000008700 574 0.912 - - 0.912 - - - - - - - programmed cell death 4 [Source:NCBI gene;Acc:374191]
97. PVALB1 PVALB1 267 0.912 - - 0.912 - - - - - - -
98. FANCC ENSGALG00000012618 7002 0.912 - - - - - - 0.912 - - - FA complementation group C [Source:NCBI gene;Acc:427468]
99. OLFML3 ENSGALG00000001956 28633 0.912 - - - - - - 0.912 - - - olfactomedin like 3 [Source:NCBI gene;Acc:419882]
100. ACOT9 ENSGALG00000016351 330 0.911 - - 0.911 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]

There are 763 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA