Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SUDS3

Gene Name Gene ID Reads Annotation
SUDS3 ENSGALG00000007393 8322 SDS3 homolog, SIN3A corepressor complex component [Source:NCBI gene;Acc:427713]











Genes with expression patterns similar to SUDS3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SUDS3 ENSGALG00000007393 8322 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SDS3 homolog, SIN3A corepressor complex component [Source:NCBI gene;Acc:427713]
2. MRPL37 ENSGALG00000010761 10596 1.661 - - - - - - 0.807 0.854 - - mitochondrial ribosomal protein L37 [Source:NCBI gene;Acc:772313]
3. TMX3 ENSGALG00000013757 6387 1.578 - - - - - - 0.741 0.837 - - Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
4. COMMD4 ENSGALG00000001572 31664 1.56 - - - - - - 0.850 - - 0.710 COMM domain containing 4 [Source:NCBI gene;Acc:770048]
5. HOXA9 ENSGALG00000028983 9298 1.541 - - - - - - 0.783 - - 0.758 homeobox A9 [Source:NCBI gene;Acc:396096]
6. ANKRA2 ENSGALG00000013511 3460 1.533 - - - - - - 0.786 - - 0.747 ankyrin repeat family A member 2 [Source:NCBI gene;Acc:426153]
7. MRPL15 ENSGALG00000041086 16820 1.528 - - - - - - 0.817 - - 0.711 mitochondrial ribosomal protein L15 [Source:NCBI gene;Acc:421121]
8. CTCF 10811 1.454 - - - - - - 0.711 - - 0.743 CCCTC-binding factor, transcript variant X2
9. WDR33 ENSGALG00000002043 6340 1.449 - - - - - - - 0.702 - 0.747 WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
10. CSTF2 ENSGALG00000006760 8820 1.445 - - - - - - 0.716 - - 0.729 cleavage stimulation factor subunit 2 [Source:NCBI gene;Acc:422258]
11. CWF19L2 ENSGALG00000017171 4590 0.907 - - - - - - - 0.907 - - CWF19 like cell cycle control factor 2 [Source:HGNC Symbol;Acc:HGNC:26508]
12. CLTCL1 ENSGALG00000041760 9351 0.905 - - - - - - 0.905 - - - clathrin, heavy chain-like 1, transcript variant X6
13. AHSA1 ENSGALG00000010463 15252 0.905 - - - - - - - 0.905 - - activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]
14. ENSGALG00000020510 ENSGALG00000020510 4037 0.884 - - - - - - 0.884 - - -
15. THAP5 ENSGALG00000009494 6540 0.882 - - - - - - 0.882 - - - THAP domain containing 5 [Source:NCBI gene;Acc:417784]
16. HES1 ENSGALG00000028015 6818 0.875 - - - - - - - 0.875 - - hes family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:5192]
17. TTC27 ENSGALG00000010538 9685 0.875 - - - - - - 0.875 - - - tetratricopeptide repeat domain 27 [Source:NCBI gene;Acc:421462]
18. MAP3K7 ENSGALG00000015596 15164 0.861 - - - - - - 0.861 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
19. BRP44L BRP44L 30452 0.857 - - - - - - 0.857 - - -
20. RPF2 ENSGALG00000037087 12788 0.857 - - - - - - 0.857 - - - ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
21. PDHB ENSGALG00000029576 12254 0.854 - - - - - - 0.854 - - - pyruvate dehydrogenase (lipoamide) beta [Source:NCBI gene;Acc:416066]
22. TCERG1 ENSGALG00000007528 6346 0.852 - - - - - - - 0.852 - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
23. POLE2 ENSGALG00000012237 9023 0.85 - - - - - - 0.850 - - - DNA polymerase epsilon 2, accessory subunit [Source:NCBI gene;Acc:423567]
24. GLIPR2 ENSGALG00000028821 5791 0.85 - - - - - - 0.850 - - - GLI pathogenesis related 2, transcript variant X2
25. ACTR2 ENSGALG00000008779 17812 0.847 - - - - - - 0.847 - - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
26. NDUFS1 ENSGALG00000008606 7898 0.843 - - - - - - 0.843 - - - NADH:ubiquinone oxidoreductase core subunit S1 [Source:NCBI gene;Acc:424102]
27. PLAA ENSGALG00000001782 5459 0.841 - - - - - - 0.841 - - - phospholipase A2 activating protein [Source:HGNC Symbol;Acc:HGNC:9043]
28. YWHAZ ENSGALG00000031387 84985 0.837 - - - - - - 0.837 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
29. RANGAP1 ENSGALG00000011966 20170 0.836 - - - - - - 0.836 - - - Ran GTPase activating protein 1 [Source:NCBI gene;Acc:417997]
30. ATP5L ENSGALG00000006899 69561 0.835 - - - - - - 0.835 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
31. TMEM70 ENSGALG00000033568 10720 0.835 - - - - - - 0.835 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
32. STRADA ENSGALG00000000550 6912 0.834 - - - - - - 0.834 - - - STE20-related kinase adaptor alpha [Source:NCBI gene;Acc:419957]
33. BAG5 ENSGALG00000031062 4498 0.833 - - - - - - 0.833 - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
34. ATG5 ENSGALG00000015387 7752 0.833 - - - - - - 0.833 - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
35. PPFIA1 ENSGALG00000035774 5258 0.833 - - - - - - 0.833 - - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
36. CYB5A ENSGALG00000013708 8287 0.832 - - - - - - 0.832 - - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
37. PSMG3 ENSGALG00000004203 11240 0.832 - - - - - - - - - 0.832 proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
38. ZC3H13 ENSGALG00000016984 21043 0.83 - - - - - - 0.830 - - - zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:HGNC:20368]
39. HERC2 ENSGALG00000016739 9900 0.83 - - - - - - 0.830 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
40. CZH9ORF80 CZH9ORF80 12760 0.829 - - - - - - 0.829 - - -
41. UBE2D1 ENSGALG00000021213 5876 0.829 - - - - - - 0.829 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
42. ESD ENSGALG00000016991 11289 0.828 - - - - - - 0.828 - - - esterase D [Source:NCBI gene;Acc:418856]
43. ENSGALG00000002903 ENSGALG00000002903 18304 0.827 - - - - - - 0.827 - - -
44. IARS ENSGALG00000004813 12936 0.826 - - - - - - 0.826 - - - isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:5330]
45. RPS17 ENSGALG00000002157 142120 0.825 - - - - - - 0.825 - - - ribosomal protein S17 [Source:NCBI gene;Acc:374053]
46. METAP2 ENSGALG00000011377 16311 0.825 - - - - - - 0.825 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
47. RFWD3 2315 0.823 - - - - - - 0.823 - - - ring finger and WD repeat domain 3
48. TMEM185A ENSGALG00000009139 4424 0.822 - - - - - - 0.822 - - - transmembrane protein 185A [Source:HGNC Symbol;Acc:HGNC:17125]
49. RAP1A ENSGALG00000001476 5287 0.821 - - - - - - 0.821 - - - RAP1A, member of RAS oncogene family
50. CDC45 ENSGALG00000001616 8432 0.819 - - - - - - 0.819 - - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
51. FADS1 ENSGALG00000007127 5231 0.819 - - - - - - 0.819 - - - fatty acid desaturase 1
52. POLDIP2 ENSGALG00000003211 11664 0.818 - - - - - - 0.818 - - - DNA polymerase delta interacting protein 2 [Source:NCBI gene;Acc:417565]
53. KIF2C ENSGALG00000010120 8999 0.818 - - - - - - 0.818 - - - kinesin family member 2C, transcript variant X1
54. RBBP4 ENSGALG00000003522 72455 0.818 - - - - - - 0.818 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
55. PDCD6 ENSGALG00000013400 7611 0.817 - - - - - - 0.817 - - - programmed cell death 6 [Source:HGNC Symbol;Acc:HGNC:8765]
56. LY6E ENSGALG00000041621 16227 0.817 - - - - - - 0.817 - - - lymphocyte antigen 6 family member E [Source:NCBI gene;Acc:395550]
57. SMC4 ENSGALG00000009553 15715 0.816 - - - - - - 0.816 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
58. C1QBP ENSGALG00000001654 34814 0.816 - - - - - - 0.816 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
59. MLST8 ENSGALG00000005878 8116 0.816 - - - - - - 0.816 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
60. TOMM22 ENSGALG00000019316 27323 0.816 - - - - - - - - - 0.816 translocase of outer mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:18002]
61. ATPAF1 ENSGALG00000010444 3677 0.814 - - - - - - - - - 0.814 ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
62. MED27 ENSGALG00000003683 6808 0.814 - - - - - - 0.814 - - - mediator complex subunit 27 [Source:NCBI gene;Acc:417172]
63. GLB1L2 ENSGALG00000001604 4057 0.814 - - - - - - 0.814 - - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
64. LSM6 ENSGALG00000009985 18582 0.812 - - - - - - 0.812 - - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:422466]
65. EBNA1BP2 ENSGALG00000009045 17453 0.812 - - - - - - 0.812 - - - EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
66. BRP44 BRP44 17093 0.812 - - - - - - 0.812 - - -
67. PTK2 ENSGALG00000031741 13103 0.811 - - - - - - 0.811 - - - protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
68. PRMT7 ENSGALG00000038865 2666 0.811 - - - - - - 0.811 - - - protein arginine methyltransferase 7 [Source:NCBI gene;Acc:415620]
69. PSAT1 ENSGALG00000015180 4752 0.811 - - - - - - 0.811 - - - phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]
70. AMDHD2 ENSGALG00000009234 1730 0.81 - - - - - - - - - 0.810 Gallus gallus amidohydrolase domain containing 2 (AMDHD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001345995]
71. NUPL1 NUPL1 8197 0.81 - - - - - - 0.810 - - -
72. CSRP2BP CSRP2BP 4679 0.808 - - - - - - 0.808 - - -
73. UQCRH ENSGALG00000017380 55734 0.807 - - - - - - 0.807 - - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
74. ERGIC2 ENSGALG00000007183 12870 0.807 - - - - - - 0.807 - - - ERGIC and golgi 2 [Source:NCBI gene;Acc:417697]
75. TMEM194B TMEM194B 3815 0.806 - - - - - - 0.806 - - -
76. EXOSC2 ENSGALG00000040373 24275 0.806 - - - - - - - 0.806 - - exosome component 2 [Source:NCBI gene;Acc:417182]
77. CDK5RAP1 ENSGALG00000006738 2628 0.805 - - - - - - 0.805 - - - CDK5 regulatory subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:15880]
78. ORC1 ENSGALG00000010623 2859 0.805 - - - - - - 0.805 - - - origin recognition complex subunit 1 [Source:NCBI gene;Acc:424640]
79. NDUFAF2 ENSGALG00000027564 7302 0.804 - - - - - - 0.804 - - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
80. MRPL20 ENSGALG00000001542 28764 0.804 - - - - - - 0.804 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
81. ABL ABL 9532 0.803 - - - - - - 0.803 - - -
82. CRCP ENSGALG00000002587 8809 0.803 - - - - - - 0.803 - - - CGRP receptor component [Source:NCBI gene;Acc:396022]
83. GATD3A ENSGALG00000016918 24760 0.803 - - - - - - 0.803 - - - glutamine amidotransferase like class 1 domain containing 3A [Source:NCBI gene;Acc:418811]
84. CCDC126 ENSGALG00000010976 1892 0.802 - - - - - - 0.802 - - - coiled-coil domain containing 126 [Source:HGNC Symbol;Acc:HGNC:22398]
85. CHP1 ENSGALG00000008569 6876 0.802 - - - - - - 0.802 - - - calcineurin like EF-hand protein 1 [Source:NCBI gene;Acc:423211]
86. SENP6 ENSGALG00000015901 8013 0.801 - - - - - - 0.801 - - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
87. PDRG1 ENSGALG00000035111 9863 0.801 - - - - - - 0.801 - - - p53 and DNA damage regulated 1 [Source:HGNC Symbol;Acc:HGNC:16119]
88. PSMC3 ENSGALG00000008108 22922 0.799 - - - - - - 0.799 - - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
89. RRP7A ENSGALG00000011866 7718 0.799 - - - - - - 0.799 - - - ribosomal RNA processing 7 homolog A [Source:NCBI gene;Acc:417975]
90. GPC4 ENSGALG00000006080 56498 0.799 - - - - - - 0.799 - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
91. SETD9 ENSGALG00000014719 5081 0.799 - - - - - - 0.799 - - - SET domain containing 9, transcript variant X2
92. CCDC75 CCDC75 4865 0.799 - - - - - - 0.799 - - -
93. FAM160B1 ENSGALG00000031404 3153 0.798 - - - - - - 0.798 - - - family with sequence similarity 160 member B1 [Source:HGNC Symbol;Acc:HGNC:29320]
94. BLOC1S5 ENSGALG00000012782 5885 0.798 - - - - - - 0.798 - - - biogenesis of lysosomal organelles complex 1 subunit 5 [Source:NCBI gene;Acc:420866]
95. NHP2L1 NHP2L1 12124 0.798 - - - - - - 0.798 - - -
96. WDR43 ENSGALG00000032529 12235 0.798 - - - - - - 0.798 - - - WD repeat domain 43 [Source:NCBI gene;Acc:421295]
97. XRN2 ENSGALG00000008372 22164 0.798 - - - - - - 0.798 - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
98. SAFB2 ENSGALG00000001948 10238 0.797 - - - - - - 0.797 - - - scaffold attachment factor B2, transcript variant X6
99. API5 ENSGALG00000037968 18265 0.796 - - - - - - 0.796 - - - apoptosis inhibitor 5 [Source:NCBI gene;Acc:423168]
100. RAB24 ENSGALG00000002984 6264 0.794 - - - - - - 0.794 - - - RAB24, member RAS oncogene family [Source:NCBI gene;Acc:427627]

There are 531 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA