Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SSR3

Gene Name Gene ID Reads Annotation
SSR3 ENSGALG00000028683 24334 signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]











Genes with expression patterns similar to SSR3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SSR3 ENSGALG00000028683 24334 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
2. RBM17 ENSGALG00000006332 12656 1.754 - - - - 0.949 - 0.805 - - - RNA binding motif protein 17 [Source:HGNC Symbol;Acc:HGNC:16944]
3. UBE2D1 ENSGALG00000021213 5876 1.73 - - - - 0.924 - 0.806 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
4. CDC45 ENSGALG00000001616 8432 1.684 - - - - - - 0.789 0.895 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
5. MCTS1 ENSGALG00000008517 27514 1.678 - - - - - - 0.895 0.783 - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
6. HMGB2 ENSGALG00000010745 89235 1.671 - - - - 0.757 - 0.914 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
7. RRP9 ENSGALG00000043359 9747 1.639 - - - - - - 0.824 0.815 - - ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
8. MZT1 ENSGALG00000016932 9269 1.636 - - - - - - 0.794 0.842 - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
9. MYO1B ENSGALG00000007712 8755 1.633 - - - - - - 0.768 0.865 - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
10. AATF ENSGALG00000005420 6501 1.632 - - - - - - 0.774 0.858 - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
11. YWHAZ ENSGALG00000031387 84985 1.628 - - - - 0.728 - 0.900 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
12. STRN ENSGALG00000010580 7561 1.626 - - - - - - 0.763 0.863 - - striatin [Source:HGNC Symbol;Acc:HGNC:11424]
13. RSL1D1 ENSGALG00000033690 13638 1.623 - - 0.772 - - - 0.851 - - - ribosomal L1 domain containing 1 [Source:NCBI gene;Acc:416416]
14. WDR61 ENSGALG00000003221 11352 1.612 - - 0.752 - - - 0.860 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
15. VPS35 ENSGALG00000004375 8059 1.604 - - - - - - 0.773 0.831 - - VPS35, retromer complex component [Source:NCBI gene;Acc:415750]
16. CPSF6 ENSGALG00000019355 7634 1.604 - - - - - - 0.814 0.790 - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
17. MRPS18A ENSGALG00000010296 11039 1.601 - - - - - - 0.729 0.872 - - mitochondrial ribosomal protein S18A [Source:NCBI gene;Acc:421445]
18. MAP3K7 ENSGALG00000015596 15164 1.597 - - 0.750 - - - 0.847 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
19. TCTN3 ENSGALG00000010517 3985 1.589 - - - - - - 0.743 0.846 - - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
20. URB1 ENSGALG00000015887 5854 1.581 - - - - - - 0.739 0.842 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
21. PRKRIP1 ENSGALG00000001833 5092 1.578 - - - - - - 0.738 0.840 - - PRKR interacting protein 1 [Source:NCBI gene;Acc:417508]
22. VATB VATB 13756 1.576 - - - - - - 0.719 0.857 - -
23. TMEM30A ENSGALG00000015904 8533 1.572 - - - - - - 0.834 0.738 - - transmembrane protein 30A [Source:NCBI gene;Acc:421861]
24. ENSGALG00000004132 ENSGALG00000004132 9287 1.558 - - - - - - 0.708 0.850 - -
25. VIMENTIN VIMENTIN 33105 1.553 - - - - - - 0.708 0.845 - -
26. TLK2 ENSGALG00000000410 4690 1.551 - - 0.706 - - - - 0.845 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
27. AMOTL2 5217 1.551 - - - - - - 0.703 0.848 - - angiomotin like 2, transcript variant X3
28. KPNA3 ENSGALG00000017009 17330 1.546 - - - - - - 0.767 0.779 - - karyopherin subunit alpha 3 [Source:NCBI gene;Acc:418870]
29. SLC35E1 ENSGALG00000003794 2563 1.542 - - - - - - 0.707 0.835 - - solute carrier family 35 member E1 [Source:HGNC Symbol;Acc:HGNC:20803]
30. WBSCR22 6082 1.506 - - - - - 0.751 0.755 - - - Williams-Beuren syndrome chromosome region 22
31. PPIC ENSGALG00000005346 5002 1.501 - - - - - - 0.767 0.734 - - peptidylprolyl isomerase C [Source:HGNC Symbol;Acc:HGNC:9256]
32. FAM110A ENSGALG00000046425 5558 1.487 - - - - - - 0.725 0.762 - - family with sequence similarity 110 member A [Source:HGNC Symbol;Acc:HGNC:16188]
33. CYB5A ENSGALG00000013708 8287 1.485 - - - - - - 0.722 0.763 - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
34. TXNDC12 ENSGALG00000010569 13822 1.477 - - 0.721 - - - 0.756 - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
35. PIGA ENSGALG00000016559 5010 1.456 - - - - - - 0.749 0.707 - - phosphatidylinositol glycan anchor biosynthesis class A [Source:NCBI gene;Acc:418624]
36. ISCU ENSGALG00000004869 6852 1.444 - - 0.728 - - - 0.716 - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
37. MRPL46 ENSGALG00000006782 5033 1.434 - - 0.708 - - - 0.726 - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
38. TACC3 ENSGALG00000015709 17336 1.428 - - - - - - 0.709 0.719 - - transforming acidic coiled-coil containing protein 3 [Source:NCBI gene;Acc:422899]
39. PSMB7 ENSGALG00000001103 42683 0.934 - - - - - - 0.934 - - - proteasome subunit beta 7 [Source:NCBI gene;Acc:378915]
40. FKBP12 FKBP12 64317 0.931 - - - - - - 0.931 - - -
41. EIF4A2 ENSGALG00000008684 58507 0.929 - - - - - - 0.929 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
42. SNRNP40 ENSGALG00000000615 32298 0.918 - - - - - - 0.918 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
43. NDUFAB1 ENSGALG00000006073 40467 0.913 - - - - - - 0.913 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
44. KDELR2 ENSGALG00000040793 29669 0.911 - - - - - - 0.911 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
45. PPP4R2 ENSGALG00000007810 15127 0.909 - - - - 0.909 - - - - - protein phosphatase 4 regulatory subunit 2 [Source:NCBI gene;Acc:416098]
46. PSMB2 ENSGALG00000026421 51885 0.904 - - - - - - 0.904 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
47. ENSGALG00000017396 ENSGALG00000017396 9028 0.904 - - - - - - 0.904 - - -
48. CSE1L ENSGALG00000004707 20653 0.901 - - - - - - 0.901 - - - chromosome segregation 1 like [Source:HGNC Symbol;Acc:HGNC:2431]
49. RANBP1 ENSGALG00000002107 17715 0.9 - - - - - - 0.900 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
50. SIKE1 ENSGALG00000002147 20836 0.9 - - - - - - 0.900 - - - suppressor of IKBKE 1 [Source:NCBI gene;Acc:419887]
51. GLO1 ENSGALG00000010127 31662 0.899 - - - - - - 0.899 - - - glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
52. MTHFD1 ENSGALG00000011797 11001 0.899 - - - - - - - 0.899 - - methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:NCBI gene;Acc:423508]
53. CASP3 ENSGALG00000010638 11572 0.896 - - - - - - 0.896 - - - caspase 3 [Source:NCBI gene;Acc:395476]
54. ORC5 ENSGALG00000008175 3426 0.896 - - - - - - - 0.896 - - origin recognition complex subunit 5 [Source:NCBI gene;Acc:417714]
55. STRN3 ENSGALG00000040464 9045 0.894 - - - - - - 0.894 - - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
56. GLRX3 ENSGALG00000010464 22578 0.893 - - - - - - 0.893 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
57. RAD21 ENSGALG00000029523 25658 0.892 - - - - - - 0.892 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
58. RUVBL1 ENSGALG00000005931 9379 0.891 - - - - - - 0.891 - - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
59. PARP1 ENSGALG00000009228 39433 0.889 - - - - - - 0.889 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
60. BIRC5 ENSGALG00000008713 46856 0.889 - - - - - - - 0.889 - - baculoviral IAP repeat containing 5 [Source:NCBI gene;Acc:374078]
61. PPP1R2 ENSGALG00000029789 11594 0.888 - - - - - - 0.888 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
62. DKC1 ENSGALG00000005054 30350 0.887 - - - - - - 0.887 - - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
63. TMEM184C ENSGALG00000010019 7856 0.886 - - - - - - 0.886 - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
64. EIF2S1 ENSGALG00000009565 63906 0.885 - - - - - - 0.885 - - - eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
65. ITGB1 ENSGALG00000007145 19551 0.884 - - - - - - 0.884 - - - integrin subunit beta 1 [Source:NCBI gene;Acc:374058]
66. PTP4A2 ENSGALG00000003265 24826 0.884 - - - - - - 0.884 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
67. PPIH ENSGALG00000004874 25558 0.884 - - - - - - 0.884 - - - peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
68. EHD3 ENSGALG00000009086 14407 0.882 - - - - - - 0.882 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
69. SPCS3 ENSGALG00000010839 19106 0.881 - - - - - - 0.881 - - - signal peptidase complex subunit 3 [Source:NCBI gene;Acc:396234]
70. SKP2 ENSGALG00000003547 14637 0.88 - - - - - - 0.880 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
71. UTP11L UTP11L 11927 0.879 - - - - - - 0.879 - - -
72. PSMD12 ENSGALG00000026225 17473 0.879 - - - - - - 0.879 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
73. GSPT1 15580 0.877 - - - - - - 0.877 - - - G1 to S phase transition 1, transcript variant X1
74. SLC25A3 ENSGALG00000011514 62606 0.876 - - - - - - 0.876 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
75. METAP2 ENSGALG00000011377 16311 0.874 - - - - - - 0.874 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
76. TOMM20 ENSGALG00000035299 23431 0.873 - - - - - - 0.873 - - - translocase of outer mitochondrial membrane 20 [Source:HGNC Symbol;Acc:HGNC:20947]
77. PRELID1 ENSGALG00000002990 55592 0.873 - - - - - - 0.873 - - - PRELI domain containing 1 [Source:NCBI gene;Acc:395819]
78. TXNDC17 ENSGALG00000027950 45004 0.873 - - - - - - 0.873 - - - thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:HGNC:28218]
79. DPYSL2 ENSGALG00000000227 9668 0.871 - - - - - - 0.871 - - - dihydropyrimidinase like 2 [Source:NCBI gene;Acc:395155]
80. UCHL3 ENSGALG00000016921 16208 0.87 - - - - - - 0.870 - - - ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
81. SMC4 ENSGALG00000009553 15715 0.87 - - - - - - 0.870 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
82. MORF4L1 ENSGALG00000008146 29940 0.87 - - - - - - 0.870 - - - mortality factor 4 like 1 [Source:NCBI gene;Acc:554283]
83. BLMH ENSGALG00000004259 36907 0.87 - - - - - - 0.870 - - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
84. PCNP ENSGALG00000015330 15750 0.87 - - - - - - 0.870 - - - PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
85. ENSGALG00000009044 ENSGALG00000009044 14492 0.869 - - - - - - 0.869 - - -
86. CLINT1 ENSGALG00000003702 11269 0.867 - - - - - - 0.867 - - - clathrin interactor 1 [Source:NCBI gene;Acc:416240]
87. BRP44 BRP44 17093 0.866 - - - - - - 0.866 - - -
88. ILF2 ENSGALG00000011570 23050 0.866 - - - - - - 0.866 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
89. EIF3B ENSGALG00000040999 49971 0.866 - - - - - - 0.866 - - - eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
90. PPP2CA ENSGALG00000006462 26306 0.865 - - - - 0.865 - - - - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
91. MRPL20 ENSGALG00000001542 28764 0.865 - - - - - - 0.865 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
92. HSPA4 ENSGALG00000040882 20966 0.865 - - - - - - 0.865 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
93. RBBP4 ENSGALG00000003522 72455 0.864 - - - - - - 0.864 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
94. HADH ENSGALG00000016124 18216 0.864 - - - - - - - 0.864 - - hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:420290]
95. RAE1 ENSGALG00000007653 8930 0.863 - - - - - - - 0.863 - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
96. TMEM167A ENSGALG00000027332 13862 0.862 - - - - - - 0.862 - - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
97. SSBP1 ENSGALG00000012876 34256 0.861 - - - - - - 0.861 - - - single stranded DNA binding protein 1 [Source:NCBI gene;Acc:418122]
98. ATP2B1 ENSGALG00000030550 15123 0.859 - - - - - - 0.859 - - - ATPase plasma membrane Ca2+ transporting 1 [Source:NCBI gene;Acc:374244]
99. LMAN1 ENSGALG00000034821 12788 0.858 - - - - - - 0.858 - - - lectin, mannose binding 1 [Source:NCBI gene;Acc:426849]
100. SF3A2 ENSGALG00000021679 12580 0.857 - - - - - - 0.857 - - - splicing factor 3a subunit 2 [Source:NCBI gene;Acc:420077]

There are 1073 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA