Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SSR1

Gene Name Gene ID Reads Annotation
SSR1 ENSGALG00000012798 62626 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]











Genes with expression patterns similar to SSR1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SSR1 ENSGALG00000012798 62626 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
2. EIF5B ENSGALG00000016764 30681 1.806 - - - - - - 0.998 0.808 - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
3. GTF2I ENSGALG00000021665 6812 1.749 - - - - - - 0.994 0.755 - - general transcription factor IIi [Source:HGNC Symbol;Acc:HGNC:4659]
4. LARS ENSGALG00000007494 13966 1.745 - - - - - - 0.979 0.766 - - leucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:6512]
5. VPS41 ENSGALG00000031635 4391 1.741 - - - - - - 0.996 0.745 - - VPS41, HOPS complex subunit [Source:NCBI gene;Acc:420762]
6. GAS41 GAS41 9941 1.723 - - - - - - 0.996 0.727 - -
7. TMEM9B ENSGALG00000005908 14074 0.998 - - - - - - 0.998 - - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
8. STT3B ENSGALG00000011465 11939 0.997 - - - - - - 0.997 - - - STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:NCBI gene;Acc:428444]
9. PCNA ENSGALG00000029292 19163 0.997 - - - - - - 0.997 - - - proliferating cell nuclear antigen [Source:NCBI gene;Acc:373984]
10. SF3A1 ENSGALG00000007937 11716 0.997 - - - - - - 0.997 - - - splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]
11. SH2D3C ENSGALG00000005036 5101 0.997 - - - - - - 0.997 - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
12. USP34 ENSGALG00000004455 6667 0.997 - - - - - - 0.997 - - - ubiquitin specific peptidase 34 [Source:NCBI gene;Acc:421193]
13. SAMM50 ENSGALG00000014194 20437 0.997 - - - - - - 0.997 - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
14. FAM206A ENSGALG00000019524 7170 0.997 - - - - - - 0.997 - - - family with sequence similarity 206 member A [Source:NCBI gene;Acc:420983]
15. CASC4 ENSGALG00000008208 8338 0.997 - - - - - - 0.997 - - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
16. CCDC47 ENSGALG00000000564 6584 0.996 - - - - - - 0.996 - - - coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:HGNC:24856]
17. TLE4 TLE4 7278 0.996 - - - - - - 0.996 - - -
18. POGZ ENSGALG00000036365 4056 0.996 - - - - - - 0.996 - - - pogo transposable element with ZNF domain, transcript variant X2
19. WDR33 ENSGALG00000002043 6340 0.996 - - - - - - 0.996 - - - WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
20. RARRES2 ENSGALG00000042642 3043 0.995 - - - - - - 0.995 - - - retinoic acid receptor responder (tazarotene induced) 2 [Source:NCBI gene;Acc:420366]
21. MTF2 ENSGALG00000043087 15225 0.995 - - - - - - 0.995 - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
22. FKBP9 ENSGALG00000037669 12079 0.995 - - - - - - 0.995 - - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
23. TRIM37 ENSGALG00000005084 4036 0.995 - - - - - - 0.995 - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
24. ZCCHC17 ENSGALG00000000618 5163 0.995 - - - - - - 0.995 - - - zinc finger CCHC-type containing 17 [Source:NCBI gene;Acc:404295]
25. BTG1 ENSGALG00000011276 17496 0.995 - - - - - - 0.995 - - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
26. HOXB3 ENSGALG00000043219 5198 0.995 - - - - - - 0.995 - - - homeobox B3 [Source:NCBI gene;Acc:395502]
27. SLC9A3R2 ENSGALG00000005608 4220 0.995 - - - - - - 0.995 - - - SLC9A3 regulator 2 [Source:HGNC Symbol;Acc:HGNC:11076]
28. FAAH ENSGALG00000010433 3309 0.994 - - - - - - 0.994 - - - fatty acid amide hydrolase [Source:HGNC Symbol;Acc:HGNC:3553]
29. NAA15 ENSGALG00000009782 18563 0.994 - - - - - - 0.994 - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
30. C-MET C-MET 1650 0.994 - - - - - - 0.994 - - -
31. PPP1CB ENSGALG00000010026 6909 0.994 - - - - - - 0.994 - - - protein phosphatase 1 catalytic subunit beta [Source:NCBI gene;Acc:396019]
32. NSF ENSGALG00000001055 7399 0.993 - - - - - - 0.993 - - - N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:NCBI gene;Acc:419972]
33. GFPT1 ENSGALG00000036391 14025 0.992 - - - - - - 0.992 - - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
34. BID ENSGALG00000013039 12427 0.992 - - - - - - 0.992 - - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
35. PPP1R8 ENSGALG00000000729 11797 0.992 - - - - - - 0.992 - - - protein phosphatase 1 regulatory subunit 8 [Source:NCBI gene;Acc:419564]
36. OLFML3 ENSGALG00000001956 28633 0.985 - - - - - - 0.985 - - - olfactomedin like 3 [Source:NCBI gene;Acc:419882]
37. FANCC ENSGALG00000012618 7002 0.983 - - - - - - 0.983 - - - FA complementation group C [Source:NCBI gene;Acc:427468]
38. LPHN2 LPHN2 16507 0.98 - - - - - - 0.980 - - -
39. NOL9 ENSGALG00000028958 23978 0.979 - - - - - - 0.979 - - - nucleolar protein 9 [Source:HGNC Symbol;Acc:HGNC:26265]
40. STK3 ENSGALG00000032850 6339 0.979 - - - - - - 0.979 - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
41. SRSF7 ENSGALG00000033120 43444 0.974 - - - - - - 0.974 - - - serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:426265]
42. PKM ENSGALG00000001992 93960 0.945 - - - - - - 0.945 - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
43. ACTG1 ENSGALG00000001381 63905 0.933 - - - - - - 0.933 - - - Actin, gamma 1 [Source:NCBI gene;Acc:415296]
44. SYNCRIP ENSGALG00000015830 30555 0.932 - - - - - - 0.932 - - - synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
45. GNB2L1 ENSGALG00000000122 194871 0.91 - - - - - - 0.910 - - - receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. C11H16ORF80 C11H16ORF80 18673 0.899 - - - - - - - 0.899 - -
47. ADRM1 ENSGALG00000005200 5417 0.889 - - - - - - - 0.889 - - adhesion regulating molecule 1 [Source:NCBI gene;Acc:395365]
48. ENSGALG00000001861 ENSGALG00000001861 10150 0.888 - - - - - - - 0.888 - -
49. UTP15 ENSGALG00000013510 13122 0.884 - - - - - - - 0.884 - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
50. DAD1 ENSGALG00000035626 32604 0.883 - - - - - - - 0.883 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
51. SLMO2 SLMO2 9207 0.883 - - - - - - - 0.883 - -
52. TMEM258 ENSGALG00000038292 31116 0.876 - - - - - - - 0.876 - - transmembrane protein 258 [Source:NCBI gene;Acc:422964]
53. SFSWAP ENSGALG00000002487 9977 0.875 - - - - - - 0.875 - - - splicing factor SWAP [Source:HGNC Symbol;Acc:HGNC:10790]
54. NDUFS4 ENSGALG00000028026 25876 0.873 - - - - - - 0.873 - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
55. ADI1 ENSGALG00000025796 8636 0.869 - - - - - - - 0.869 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
56. NANS ENSGALG00000015320 10552 0.868 - - - - - - - 0.868 - - N-acetylneuraminate synthase [Source:NCBI gene;Acc:427283]
57. RIOK2 ENSGALG00000015288 6280 0.867 - - - - - - - 0.867 - - RIO kinase 2 [Source:NCBI gene;Acc:427278]
58. NUP85 ENSGALG00000007974 21249 0.866 - - - - - - - 0.866 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
59. ARG2 ENSGALG00000009519 19523 0.859 - - - - - - - 0.859 - - arginase 2 [Source:NCBI gene;Acc:423272]
60. RRP1B ENSGALG00000035696 12309 0.858 - - - - - - - 0.858 - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
61. RPA3 ENSGALG00000010700 6212 0.857 - - - - - - - 0.857 - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
62. ANAPC16 ENSGALG00000004410 18001 0.857 - - - - - - - 0.857 - - anaphase promoting complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:26976]
63. ATL2 ENSGALG00000037289 7926 0.856 - - - - - - - 0.856 - - atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
64. RBM45 ENSGALG00000009202 6057 0.855 - - - - - - - 0.855 - - RNA binding motif protein 45 [Source:NCBI gene;Acc:424132]
65. MORN4 ENSGALG00000006149 7772 0.854 - - - - - - - 0.854 - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
66. EEF1D 153795 0.854 - - - - - - 0.854 - - - eukaryotic translation elongation factor 1 delta, transcript variant X13
67. PLEKHA5 ENSGALG00000013134 3656 0.854 - - - - - - - 0.854 - - pleckstrin homology domain containing A5 [Source:HGNC Symbol;Acc:HGNC:30036]
68. TRAPPC6B ENSGALG00000010157 7567 0.853 - - - - - - - 0.853 - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
69. SPCS1 ENSGALG00000001655 7718 0.851 - - - - - - - 0.851 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
70. MSH6 ENSGALG00000008957 6396 0.85 - - - - - - - 0.850 - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
71. PHPT1 ENSGALG00000039061 17343 0.85 - - - - - - - 0.850 - - phosphohistidine phosphatase 1 [Source:NCBI gene;Acc:770750]
72. NDUFA12 ENSGALG00000011325 19807 0.85 - - - - - - - 0.850 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
73. CSRP2BP CSRP2BP 4679 0.85 - - - - - - - 0.850 - -
74. POLR3F ENSGALG00000008749 5645 0.849 - - - - - - - 0.849 - - RNA polymerase III subunit F [Source:NCBI gene;Acc:416723]
75. BPNT1 ENSGALG00000009576 7445 0.845 - - - - - - - 0.845 - - 3'(2'), 5'-bisphosphate nucleotidase 1 [Source:NCBI gene;Acc:421347]
76. MED21 ENSGALG00000027435 5766 0.845 - - - - - - - 0.845 - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
77. ATG16L1 ENSGALG00000001619 3562 0.844 - - - - - - - 0.844 - - autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
78. GCSH ENSGALG00000032679 29231 0.842 - - - - - - - 0.842 - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
79. MFAP1 ENSGALG00000028295 6043 0.842 - - - - - - - 0.842 - - microfibrillar associated protein 1 [Source:NCBI gene;Acc:415586]
80. PLK1 ENSGALG00000006110 12892 0.841 - - - - - - - 0.841 - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
81. MTAP ENSGALG00000008174 10976 0.838 - - - - - - - 0.838 - - methylthioadenosine phosphorylase [Source:NCBI gene;Acc:431261]
82. SF3B3 ENSGALG00000002531 19397 0.838 - - - - - - - 0.838 - - splicing factor 3b subunit 3, transcript variant X2
83. DSCR3 3583 0.832 - - - - - - - 0.832 - - DSCR3 arrestin fold containing, transcript variant X1
84. BLMH ENSGALG00000004259 36907 0.832 - - - - - - - 0.832 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
85. URM1 ENSGALG00000004971 17880 0.831 - - - - - - - 0.831 - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
86. VPS11 ENSGALG00000029536 3421 0.831 - - - - - - - 0.831 - - VPS11, CORVET/HOPS core subunit [Source:HGNC Symbol;Acc:HGNC:14583]
87. MRPS22 ENSGALG00000005367 8307 0.83 - - - - - - - 0.830 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
88. IARS ENSGALG00000004813 12936 0.828 - - - - - - - 0.828 - - isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:5330]
89. FADS1 ENSGALG00000007127 5231 0.828 - - - - - - - 0.828 - - fatty acid desaturase 1
90. SASS6 ENSGALG00000005302 4029 0.827 - - - - - - - 0.827 - - SAS-6 centriolar assembly protein [Source:NCBI gene;Acc:424471]
91. NSG1 ENSGALG00000015010 5829 0.827 - - - - - - - 0.827 - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
92. ACP1 ENSGALG00000016363 10636 0.826 - - - - - - - 0.826 - - acid phosphatase 1 [Source:NCBI gene;Acc:421909]
93. CASP6 ENSGALG00000012186 6639 0.826 - - - - - - - 0.826 - - caspase 6 [Source:NCBI gene;Acc:395477]
94. HINT3 ENSGALG00000044342 5674 0.825 - - - - - - - 0.825 - - histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
95. CCNDBP1 ENSGALG00000004837 11520 0.824 - - - - - - - 0.824 - - cyclin D1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:1587]
96. GPR162 ENSGALG00000022926 7181 0.823 - - - - - - - 0.823 - - G protein-coupled receptor 162 [Source:HGNC Symbol;Acc:HGNC:16693]
97. MED7 ENSGALG00000003870 4244 0.823 - - - - - - - 0.823 - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
98. LSG1 ENSGALG00000007058 4591 0.823 - - - - - - - 0.823 - - large 60S subunit nuclear export GTPase 1 [Source:NCBI gene;Acc:424897]
99. MRPL2 ENSGALG00000008597 16500 0.822 - - - - - - - 0.822 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
100. PRKACB ENSGALG00000028530 12506 0.822 - - - - - - - 0.822 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2

There are 435 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA