Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SSBP3

Gene Name Gene ID Reads Annotation
SSBP3 ENSGALG00000010774 3141 single stranded DNA binding protein 3 [Source:NCBI gene;Acc:395250]











Genes with expression patterns similar to SSBP3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SSBP3 ENSGALG00000010774 3141 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 single stranded DNA binding protein 3 [Source:NCBI gene;Acc:395250]
2. ITGB3BP ENSGALG00000010995 3754 0.834 - - 0.834 - - - - - - - integrin subunit beta 3 binding protein [Source:NCBI gene;Acc:424689]
3. MAPKAPK2 ENSGALG00000000883 6174 0.831 - - 0.831 - - - - - - - mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
4. TEX264 ENSGALG00000003832 3053 0.813 - - 0.813 - - - - - - - testis expressed 264 [Source:NCBI gene;Acc:415938]
5. VPRBP VPRBP 4037 0.799 - - - - - - 0.799 - - -
6. ATG2B ENSGALG00000042088 918 0.799 - - 0.799 - - - - - - - autophagy related 2B [Source:HGNC Symbol;Acc:HGNC:20187]
7. ABCC1 ENSGALG00000006646 2596 0.796 - - 0.796 - - - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
8. SH3KBP1 ENSGALG00000016420 1739 0.793 - - 0.793 - - - - - - - SH3 domain containing kinase binding protein 1 [Source:NCBI gene;Acc:418608]
9. MOK ENSGALG00000011366 85 0.78 - - 0.780 - - - - - - - MOK protein kinase [Source:HGNC Symbol;Acc:HGNC:9833]
10. ESCO1 ENSGALG00000014936 739 0.774 - - 0.774 - - - - - - - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24645]
11. KIDINS220 ENSGALG00000016409 854 0.772 - - 0.772 - - - - - - - kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
12. DNAJB5 ENSGALG00000001918 81 0.771 - - 0.771 - - - - - - - DnaJ heat shock protein family (Hsp40) member B5 [Source:HGNC Symbol;Acc:HGNC:14887]
13. MPP1 ENSGALG00000005071 3865 0.769 - - - - - - - 0.769 - - membrane palmitoylated protein 1 [Source:NCBI gene;Acc:422197]
14. ANKRD9 ENSGALG00000011376 525 0.766 - - 0.766 - - - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
15. ARHGAP11A ENSGALG00000009731 6817 0.763 - - - - - - 0.763 - - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
16. DNAJB14 ENSGALG00000014026 598 0.762 - - 0.762 - - - - - - - DnaJ heat shock protein family (Hsp40) member B14 [Source:NCBI gene;Acc:426362]
17. CCDC135 CCDC135 220 0.755 - - 0.755 - - - - - - -
18. MAGI2 1111 0.754 - - 0.754 - - - - - - - membrane associated guanylate kinase, WW and PDZ domain containing 2, transcript variant X12
19. CCNE2 ENSGALG00000040794 1229 0.752 - - - - - - - - 0.752 - cyclin E2 [Source:NCBI gene;Acc:420231]
20. FITM2 ENSGALG00000026285 1855 0.75 - - 0.750 - - - - - - - fat storage inducing transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:16135]
21. DLX6 ENSGALG00000023195 29 0.749 - - 0.749 - - - - - - - distal-less homeobox 6 [Source:NCBI gene;Acc:772070]
22. NNT ENSGALG00000014869 8496 0.749 - - 0.749 - - - - - - - nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
23. EPHA1 ENSGALG00000014687 174 0.747 - - 0.747 - - - - - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
24. ZADH2 ENSGALG00000022882 11790 0.746 - - - - - - - 0.746 - - zinc binding alcohol dehydrogenase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28697]
25. CDC73 ENSGALG00000002469 4586 0.743 - - 0.743 - - - - - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
26. DFFB ENSGALG00000036295 88 0.742 - - 0.742 - - - - - - - DNA fragmentation factor subunit beta [Source:NCBI gene;Acc:374158]
27. KPNA5 ENSGALG00000014937 28 0.741 - - 0.741 - - - - - - - karyopherin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6398]
28. DUSP1 ENSGALG00000040360 2129 0.738 - - 0.738 - - - - - - - dual specificity phosphatase 1 [Source:NCBI gene;Acc:374192]
29. RGS12 ENSGALG00000015626 280 0.738 - - 0.738 - - - - - - - regulator of G protein signaling 12 [Source:HGNC Symbol;Acc:HGNC:9994]
30. C1H11ORF70 ENSGALG00000017189 395 0.737 - - 0.737 - - - - - - - chromosome 1 open reading frame, human C11orf70 [Source:NCBI gene;Acc:418985]
31. CD300A CD300A 173 0.736 - - 0.736 - - - - - - -
32. FN3KRP ENSGALG00000028979 4160 0.736 - - - - - - - 0.736 - - fructosamine 3 kinase related protein [Source:NCBI gene;Acc:417336]
33. TFB2M ENSGALG00000010651 4374 0.734 - - - - - - - 0.734 - - transcription factor B2, mitochondrial
34. PRKCE ENSGALG00000010000 99 0.734 - - 0.734 - - - - - - - protein kinase C epsilon, transcript variant X1
35. EML5 ENSGALG00000010639 25 0.734 - - 0.734 - - - - - - - echinoderm microtubule associated protein like 5, transcript variant X1
36. gga-mir-6642 ENSGALG00000028521 370 0.734 - - 0.734 - - - - - - - gga-mir-6642 [Source:miRBase;Acc:MI0022461]
37. AHR2 ENSGALG00000023742 21 0.733 - - 0.733 - - - - - - - Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
38. C15orf60 C15orf60 16 0.732 - - 0.732 - - - - - - -
39. HTATSF1 ENSGALG00000006410 3526 0.732 - - 0.732 - - - - - - - HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:HGNC:5276]
40. DCAF4 ENSGALG00000009345 2604 0.732 - - - - - - - - 0.732 - DDB1 and CUL4 associated factor 4
41. ATXN3 ENSGALG00000010766 48 0.731 - - 0.731 - - - - - - - ataxin 3 [Source:NCBI gene;Acc:378424]
42. PDZK1IP1 ENSGALG00000010473 551 0.73 - - 0.730 - - - - - - - PDZK1 interacting protein 1 [Source:NCBI gene;Acc:424619]
43. MSL1 ENSGALG00000030739 1290 0.729 - - 0.729 - - - - - - - male specific lethal 1 homolog
44. DDX17 ENSGALG00000037360 2670 0.729 - - - - - - 0.729 - - - DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
45. PBRM1 ENSGALG00000037455 6450 0.728 - - - - - - - 0.728 - - polybromo 1 [Source:NCBI gene;Acc:396074]
46. TMEM192 ENSGALG00000009528 2428 0.727 - - 0.727 - - - - - - - transmembrane protein 192 [Source:HGNC Symbol;Acc:HGNC:26775]
47. OTOA ENSGALG00000007070 94 0.727 - - 0.727 - - - - - - - otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
48. DNAJB6 ENSGALG00000006477 3804 0.727 - - 0.727 - - - - - - - DnaJ heat shock protein family (Hsp40) member B6 [Source:NCBI gene;Acc:420448]
49. MRPL48 ENSGALG00000017319 9773 0.726 - - 0.726 - - - - - - - mitochondrial ribosomal protein L48 [Source:NCBI gene;Acc:419062]
50. ZZEF1 ENSGALG00000001546 767 0.726 - - 0.726 - - - - - - - zinc finger ZZ-type and EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29027]
51. TRIT1 ENSGALG00000003851 1518 0.725 - - - - - - - - 0.725 - tRNA isopentenyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20286]
52. DNALI1 ENSGALG00000001996 64 0.725 - - 0.725 - - - - - - - dynein axonemal light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
53. BMP2K ENSGALG00000010885 37 0.724 - - 0.724 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
54. FSCN2 ENSGALG00000023354 13 0.724 - - 0.724 - - - - - - - fascin actin-bundling protein 2, retinal [Source:NCBI gene;Acc:429198]
55. BEAN1 ENSGALG00000005266 1359 0.724 - - - - - - - 0.724 - - brain expressed, associated with NEDD4, 1 [Source:NCBI gene;Acc:415796]
56. DIXDC1 ENSGALG00000007929 67 0.724 - - 0.724 - - - - - - - DIX domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23695]
57. ENSGALG00000028778 ENSGALG00000028778 47 0.722 - - 0.722 - - - - - - -
58. ENSGALG00000026925 ENSGALG00000026925 119 0.722 - - 0.722 - - - - - - -
59. EXD2 ENSGALG00000009456 1677 0.722 - - - - - - 0.722 - - - exonuclease 3'-5' domain containing 2 [Source:NCBI gene;Acc:423264]
60. AGFG1 ENSGALG00000003052 4766 0.722 - - - - - - 0.722 - - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
61. TXNRD3 ENSGALG00000039363 8016 0.721 - - - - - - - 0.721 - - thioredoxin reductase 3 [Source:NCBI gene;Acc:416031]
62. FAM177A1 ENSGALG00000010046 4318 0.721 - - - - - - 0.721 - - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
63. TAX1BP1 ENSGALG00000042822 7728 0.721 - - - - - - 0.721 - - - Tax1 binding protein 1 [Source:NCBI gene;Acc:395490]
64. ENSGALG00000005723 ENSGALG00000005723 36 0.721 - - 0.721 - - - - - - -
65. TSEN15 ENSGALG00000004782 2520 0.721 - - - - - - - - 0.721 - tRNA splicing endonuclease subunit 15 [Source:HGNC Symbol;Acc:HGNC:16791]
66. GALNT11 ENSGALG00000006233 210 0.72 - - 0.720 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
67. FANCL ENSGALG00000030022 7423 0.719 - - - - - - - 0.719 - - FA complementation group L [Source:NCBI gene;Acc:421202]
68. RCAN1 ENSGALG00000016014 95 0.719 - - 0.719 - - - - - - - regulator of calcineurin 1 [Source:NCBI gene;Acc:418510]
69. TMEM132B ENSGALG00000002742 122 0.718 - - 0.718 - - - - - - - transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
70. C9orf89 C9orf89 3056 0.718 - - 0.718 - - - - - - -
71. SCNM1 ENSGALG00000046607 665 0.718 - - 0.718 - - - - - - - sodium channel modifier 1 [Source:HGNC Symbol;Acc:HGNC:23136]
72. N4BP1 ENSGALG00000003907 1888 0.717 - - - - - - - 0.717 - - NEDD4 binding protein 1 [Source:NCBI gene;Acc:415739]
73. TM4SF18 4553 0.716 - - - - - - 0.716 - - - transmembrane 4 L six family member 18, transcript variant X2
74. PCM1 ENSGALG00000013602 6347 0.716 - - - - - - 0.716 - - - pericentriolar material 1 [Source:NCBI gene;Acc:395204]
75. NDUFV2 ENSGALG00000036625 29234 0.716 - - - - - - 0.716 - - - NADH:ubiquinone oxidoreductase core subunit V2 [Source:HGNC Symbol;Acc:HGNC:7717]
76. PRDM10 632 0.716 - - 0.716 - - - - - - - PR domain 10, transcript variant X10
77. FMN2 ENSGALG00000031427 77 0.716 - - 0.716 - - - - - - - formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
78. TIPRL ENSGALG00000015246 7875 0.714 - - - - - - 0.714 - - - TOR signaling pathway regulator [Source:HGNC Symbol;Acc:HGNC:30231]
79. FANCB ENSGALG00000016569 1193 0.714 - - 0.714 - - - - - - - FA complementation group B [Source:NCBI gene;Acc:418628]
80. RAB21 ENSGALG00000010183 7718 0.714 - - - - - - - 0.714 - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
81. CCNG2 ENSGALG00000010347 9122 0.712 - - - - - - - 0.712 - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
82. LLGL1 ENSGALG00000014408 15 0.712 - - 0.712 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
83. MIB1 ENSGALG00000014974 3583 0.712 - - - - - - - 0.712 - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
84. TOX3 ENSGALG00000034649 54 0.711 - - 0.711 - - - - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
85. ACSF3 ENSGALG00000035225 261 0.711 - - 0.711 - - - - - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
86. ACVR1 ENSGALG00000037301 6448 0.71 - - 0.710 - - - - - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
87. DNMT3B ENSGALG00000041461 12959 0.71 - - - - - - - 0.710 - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
88. RAB11FIP1 41 0.71 - - 0.710 - - - - - - - RAB11 family interacting protein 1, transcript variant X2
89. PMS2 ENSGALG00000003430 2191 0.71 - - - - - - - 0.710 - - Gallus gallus PMS1 homolog 2, mismatch repair system component (PMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319022]
90. PEMT ENSGALG00000004875 4094 0.71 - - - - - - - 0.710 - - phosphatidylethanolamine N-methyltransferase [Source:NCBI gene;Acc:416508]
91. ZFYVE9 ENSGALG00000010613 2421 0.709 - - - - - - - 0.709 - - zinc finger FYVE-type containing 9 [Source:HGNC Symbol;Acc:HGNC:6775]
92. CREB3 ENSGALG00000002523 23 0.709 - - 0.709 - - - - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
93. FAM199X ENSGALG00000008872 44 0.708 - - 0.708 - - - - - - - family with sequence similarity 199, X-linked [Source:HGNC Symbol;Acc:HGNC:25195]
94. HPS3 ENSGALG00000040089 44 0.708 - - 0.708 - - - - - - - HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 [Source:HGNC Symbol;Acc:HGNC:15597]
95. HSPH1 ENSGALG00000017077 735 0.708 - - 0.708 - - - - - - - heat shock protein family H (Hsp110) member 1 [Source:NCBI gene;Acc:418917]
96. ACTR2 ENSGALG00000008779 17812 0.707 - - - - - - 0.707 - - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
97. AZIN1 ENSGALG00000029295 11085 0.706 - - - - - - - 0.706 - - antizyme inhibitor 1 [Source:NCBI gene;Acc:420254]
98. SCN5A ENSGALG00000006112 137 0.706 - - 0.706 - - - - - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
99. TMED8 ENSGALG00000020410 488 0.705 - - 0.705 - - - - - - - transmembrane p24 trafficking protein family member 8 [Source:NCBI gene;Acc:423375]
100. SQSTM1 ENSGALG00000035804 2238 0.705 - - - - - - - 0.705 - - sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]

There are 11 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA