Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SSB

Gene Name Gene ID Reads Annotation
SSB ENSGALG00000009677 25335 Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]











Genes with expression patterns similar to SSB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SSB ENSGALG00000009677 25335 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]
2. HSP90AA1 ENSGALG00000033212 55740 1.555 - - 0.700 - - 0.855 - - - - heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
3. RALGAPA1 ENSGALG00000010088 6005 0.999 - - - - - - 0.999 - - - Ral GTPase activating protein catalytic alpha subunit 1 [Source:NCBI gene;Acc:423327]
4. UFSP2 ENSGALG00000010601 5809 0.999 - - - - - - 0.999 - - - UFM1 specific peptidase 2 [Source:NCBI gene;Acc:422542]
5. HEY1 ENSGALG00000035031 8795 0.999 - - - - - - 0.999 - - - hes related family bHLH transcription factor with YRPW motif 1 [Source:HGNC Symbol;Acc:HGNC:4880]
6. XRCC3 ENSGALG00000011533 3768 0.999 - - - - - - 0.999 - - - X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
7. ZNF385D ENSGALG00000011283 2578 0.999 - - - - - - 0.999 - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
8. CTNNA1 ENSGALG00000002447 22379 0.999 - - - - - - 0.999 - - - catenin alpha 1 [Source:HGNC Symbol;Acc:HGNC:2509]
9. INPP5K ENSGALG00000002739 8120 0.999 - - - - - - 0.999 - - - inositol polyphosphate-5-phosphatase K [Source:NCBI gene;Acc:771549]
10. CEP19 ENSGALG00000006405 1645 0.999 - - - - - - 0.999 - - - centrosomal protein 19 [Source:NCBI gene;Acc:424858]
11. AP3B2 2331 0.999 - - - - - - 0.999 - - - adaptor related protein complex 3 beta 2 subunit, transcript variant X7
12. RANBP3 ENSGALG00000000577 8856 0.999 - - - - - - 0.999 - - - RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
13. ENSGALG00000023608 ENSGALG00000023608 1538 0.999 - - - - - - 0.999 - - -
14. GCC1 ENSGALG00000033149 1915 0.999 - - - - - - 0.999 - - - GRIP and coiled-coil domain containing 1 [Source:NCBI gene;Acc:430581]
15. DGCR14 DGCR14 2633 0.999 - - - - - - 0.999 - - -
16. MAST4 ENSGALG00000014784 4153 0.999 - - - - - - 0.999 - - - microtubule associated serine/threonine kinase family member 4 [Source:HGNC Symbol;Acc:HGNC:19037]
17. RWDD2B ENSGALG00000015807 3601 0.999 - - - - - - 0.999 - - - RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
18. ACAT1 ENSGALG00000017163 6239 0.999 - - - - - - 0.999 - - - acetyl-CoA acetyltransferase 1 [Source:NCBI gene;Acc:418968]
19. DNAH17 1389 0.999 - - - - - - 0.999 - - - dynein axonemal heavy chain 17, transcript variant X6
20. BCKDHB ENSGALG00000040702 9373 0.998 - - - - - - 0.998 - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
21. RNF11 ENSGALG00000010539 8617 0.998 - - - - - - 0.998 - - - ring finger protein 11 [Source:NCBI gene;Acc:424631]
22. SESTD1 ENSGALG00000009031 13090 0.998 - - - - - - 0.998 - - - SEC14 and spectrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18379]
23. FASN ENSGALG00000040896 17372 0.998 - - - - - - 0.998 - - - fatty acid synthase [Source:NCBI gene;Acc:396061]
24. NUS1 ENSGALG00000014899 13352 0.997 - - - - - - 0.997 - - - NUS1, dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:21042]
25. TMEM258 ENSGALG00000038292 31116 0.997 - - - - - - 0.997 - - - transmembrane protein 258 [Source:NCBI gene;Acc:422964]
26. USMG5 ENSGALG00000034645 33263 0.997 - - - - - - 0.997 - - - up-regulated during skeletal muscle growth 5 homolog (mouse) [Source:NCBI gene;Acc:423873]
27. TPX2 ENSGALG00000006267 26087 0.997 - - - - - - 0.997 - - - TPX2, microtubule nucleation factor [Source:NCBI gene;Acc:395081]
28. PSMD7 ENSGALG00000000707 26350 0.997 - - - - - - 0.997 - - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
29. COL4A5 ENSGALG00000008141 15874 0.995 - - - - - - 0.995 - - - collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
30. ENSGALG00000023447 ENSGALG00000023447 17486 0.995 - - - - - - 0.995 - - -
31. RNF4 ENSGALG00000015668 15780 0.994 - - - - - - 0.994 - - - ring finger protein 4 [Source:NCBI gene;Acc:422886]
32. UFM1 ENSGALG00000017042 15794 0.993 - - - - - - 0.993 - - - ubiquitin fold modifier 1 [Source:NCBI gene;Acc:418894]
33. MSH2 ENSGALG00000008962 9709 0.991 - - - - - - 0.991 - - - mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]
34. SRPR SRPR 21067 0.99 - - - - - - 0.990 - - -
35. CFL2 ENSGALG00000010027 16952 0.99 - - - - - - 0.990 - - - cofilin 2 [Source:NCBI gene;Acc:423320]
36. CKS1B ENSGALG00000028664 42261 0.989 - - - - - - 0.989 - - - CDC28 protein kinase regulatory subunit 1B [Source:NCBI gene;Acc:100134845]
37. MRPS21 ENSGALG00000000456 35298 0.985 - - - - - - 0.985 - - - mitochondrial ribosomal protein S21 [Source:NCBI gene;Acc:426666]
38. H3-IX_1 H3-IX_1 54392 0.981 - - - - - - 0.981 - - -
39. MAPRE1 ENSGALG00000006657 64346 0.97 - - - - - - 0.970 - - - microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
40. HNRNPA2B1 ENSGALG00000011036 53662 0.944 - - - - - - 0.944 - - - heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
41. ARGLU1 ENSGALG00000016855 25633 0.927 - - - - - - - 0.927 - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
42. DCTN3 ENSGALG00000021365 22839 0.911 - - - - - - 0.911 - - - dynactin subunit 3 [Source:NCBI gene;Acc:427404]
43. ERH ENSGALG00000017384 74926 0.896 - - - - - - 0.896 - - - ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
44. CCDC59 ENSGALG00000028648 9272 0.85 - - - - - - - 0.850 - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
45. RPS10 ENSGALG00000002813 541909 0.843 - - - - - - 0.843 - - - ribosomal protein S10 [Source:NCBI gene;Acc:419904]
46. CCT5 ENSGALG00000013041 56190 0.817 - - - - - 0.817 - - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
47. KIAA0895L 1739 0.815 - - - - - - - 0.815 - - KIAA0895 like, transcript variant X4
48. CARKD CARKD 2914 0.815 - - - - - - - 0.815 - -
49. RRN3 ENSGALG00000041989 3934 0.815 - - - - - - - 0.815 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
50. MADD ENSGALG00000008181 2273 0.815 - - - - - - - 0.815 - - MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]
51. FXN ENSGALG00000015108 1867 0.815 - - - - - - - 0.815 - - frataxin [Source:HGNC Symbol;Acc:HGNC:3951]
52. ARHGAP11A ENSGALG00000009731 6817 0.815 - - - - - - - 0.815 - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
53. RNF113A ENSGALG00000000538 3985 0.814 - - - - - - - 0.814 - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
54. SCLT1 2397 0.814 - - - - - - - 0.814 - - sodium channel and clathrin linker 1, transcript variant X6
55. ENSGALG00000010034 ENSGALG00000010034 3293 0.814 - - - - - - - 0.814 - -
56. GGA3 ENSGALG00000007992 3566 0.814 - - - - - - - 0.814 - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
57. NPFF1 NPFF1 3177 0.813 - - - - - - - 0.813 - -
58. HBXIP HBXIP 8637 0.813 - - - - - - - 0.813 - -
59. JKAMP ENSGALG00000012009 5781 0.812 - - - - - - - 0.812 - - JNK1/MAPK8-associated membrane protein [Source:NCBI gene;Acc:423530]
60. PDCD2L 4843 0.812 - - - - - - - 0.812 - - programmed cell death 2-like
61. TMTC2 ENSGALG00000010975 7040 0.812 - - - - - - - 0.812 - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
62. UBALD1 ENSGALG00000007619 8536 0.812 - - - - - - - 0.812 - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
63. YTHDC2 2266 0.812 - - - - - - - 0.812 - - YTH domain containing 2, transcript variant X3
64. FAM125B FAM125B 2953 0.812 - - - - - - - 0.812 - -
65. ATL1 ENSGALG00000012339 3789 0.81 - - - - - - - 0.810 - - atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
66. DDX24 ENSGALG00000010884 5485 0.809 - - - - - - - 0.809 - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
67. RBFA ENSGALG00000036067 6542 0.809 - - - - - - - 0.809 - - ribosome binding factor A (putative) [Source:NCBI gene;Acc:420806]
68. EIF3D ENSGALG00000012529 40887 0.808 - - - - - - - 0.808 - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
69. RIC8A ENSGALG00000004191 6094 0.808 - - - - - - - 0.808 - - RIC8 guanine nucleotide exchange factor A [Source:NCBI gene;Acc:422987]
70. CHMP5 ENSGALG00000013160 13347 0.806 - - - - - - - 0.806 - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
71. PGM1 ENSGALG00000011016 3391 0.806 - - - - - - - 0.806 - - phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
72. NAP1L1 ENSGALG00000010238 14506 0.803 0.803 - - - - - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
73. CHTOP ENSGALG00000042129 24112 0.801 - - - - - - - 0.801 - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
74. AN1ZNF5L ENSGALG00000014589 21148 0.798 - - - - - - - 0.798 - - AN1-type zinc finger protein 5-like, transcript variant X2
75. HSPA8 ENSGALG00000006512 124825 0.797 - - - - - 0.797 - - - - heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
76. NDUFA2 ENSGALG00000040626 27899 0.797 - - - - - - - 0.797 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:NCBI gene;Acc:768860]
77. NECAP1 ENSGALG00000037656 5181 0.796 - - - - - - - 0.796 - - NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:HGNC:24539]
78. CASP3 ENSGALG00000010638 11572 0.795 - - - - - - - 0.795 - - caspase 3 [Source:NCBI gene;Acc:395476]
79. MRPS17 ENSGALG00000002379 30243 0.789 - - - - - - - 0.789 - - mitochondrial ribosomal protein S17 [Source:NCBI gene;Acc:417538]
80. MMADHC ENSGALG00000012473 9026 0.788 - - - - - - - 0.788 - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
81. MDH2 ENSGALG00000001949 68323 0.785 - - - - - 0.785 - - - - malate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6971]
82. SQLE ENSGALG00000036915 4172 0.78 - - - - - - - 0.780 - - squalene epoxidase [Source:NCBI gene;Acc:420335]
83. NOC4L ENSGALG00000002272 9644 0.776 - - - - - - - 0.776 - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
84. RNF20 ENSGALG00000015548 7199 0.774 0.774 - - - - - - - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
85. TCERG1 ENSGALG00000007528 6346 0.774 0.774 - - - - - - - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
86. BSDC1 ENSGALG00000003405 3701 0.773 - - - - - - - 0.773 - - BSD domain containing 1 [Source:NCBI gene;Acc:419658]
87. ALYREF ENSGALG00000007237 48479 0.772 - - - - - - - 0.772 - - Aly/REF export factor [Source:NCBI gene;Acc:769169]
88. CCND1 ENSGALG00000007555 6715 0.772 - - - - - 0.772 - - - - cyclin D1 [Source:NCBI gene;Acc:396341]
89. PRKG1 ENSGALG00000003805 4654 0.771 - - - - - - - 0.771 - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
90. UGDH ENSGALG00000041993 23474 0.77 - - - - - - 0.770 - - - UDP-glucose 6-dehydrogenase [Source:NCBI gene;Acc:422792]
91. MRPL20 ENSGALG00000001542 28764 0.768 - - - - - 0.768 - - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
92. SMC3 ENSGALG00000008585 16618 0.768 - - - - - - - 0.768 - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
93. EIF3J ENSGALG00000008187 43570 0.767 - - - - - 0.767 - - - - eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
94. ATP6V1C1 ENSGALG00000034099 9898 0.765 - - - - - - 0.765 - - - ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
95. RTN4 ENSGALG00000029261 45730 0.765 - - - - - - - 0.765 - - reticulon 4 [Source:NCBI gene;Acc:378790]
96. SLC1A4 ENSGALG00000008811 1598 0.764 0.764 - - - - - - - - - solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]
97. ENSGALG00000026802 ENSGALG00000026802 14688 0.762 - - - - - - 0.762 - - -
98. ANKRD11 ENSGALG00000006222 12327 0.761 0.761 - - - - - - - - - ankyrin repeat domain 11, transcript variant X2
99. USP16 ENSGALG00000015813 6803 0.759 0.759 - - - - - - - - - ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
100. TPR ENSGALG00000005105 2924 0.759 0.759 - - - - - - - - - translocated promoter region, nuclear basket protein [Source:HGNC Symbol;Acc:HGNC:12017]

There are 57 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA