Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SS18

Gene Name Gene ID Reads Annotation
SS18 ENSGALG00000015119 4687 SS18, nBAF chromatin remodeling complex subunit [Source:NCBI gene;Acc:421085]











Genes with expression patterns similar to SS18

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SS18 ENSGALG00000015119 4687 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SS18, nBAF chromatin remodeling complex subunit [Source:NCBI gene;Acc:421085]
2. KRR1 ENSGALG00000010227 11783 1.751 - - - - - - 0.784 0.967 - - KRR1, small subunit processome component homolog [Source:NCBI gene;Acc:417863]
3. GTF3A ENSGALG00000017098 9264 1.695 - - - - - - - 0.966 0.729 - general transcription factor IIIA [Source:NCBI gene;Acc:418931]
4. CUL3 ENSGALG00000005108 9571 1.586 - - - 0.728 - - - 0.858 - - cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
5. METAP2 ENSGALG00000011377 16311 1.544 - - - - - - 0.702 0.842 - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
6. MFSD2A ENSGALG00000003879 5455 1.51 - - - 0.760 - - - - 0.750 - major facilitator superfamily domain containing 2A [Source:HGNC Symbol;Acc:HGNC:25897]
7. CRNKL1 ENSGALG00000008429 7280 1.508 - - - - - - 0.742 - 0.766 - crooked neck pre-mRNA splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:15762]
8. ADCY9 ENSGALG00000007779 766 1.493 - - - 0.763 - - - - 0.730 - adenylate cyclase 9 [Source:NCBI gene;Acc:395339]
9. C1H12ORF23 C1H12ORF23 13234 1.48 - - - 0.712 - - 0.768 - - -
10. ENSGALG00000004132 ENSGALG00000004132 9287 1.469 - - - 0.762 - - 0.707 - - -
11. PHF2 ENSGALG00000039208 2003 1.46 - - - 0.736 - - - - - 0.724 PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
12. FAM63B 3793 1.457 - - - - - - 0.744 - 0.713 - family with sequence similarity 63 member B
13. CDC42BPB ENSGALG00000011432 8220 1.45 - - - 0.710 - - 0.740 - - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
14. MED17 ENSGALG00000017218 5821 1.435 - - - - - - 0.708 - 0.727 - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
15. PALB2 ENSGALG00000006078 1549 0.985 - - - - - - - 0.985 - - partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:HGNC:26144]
16. TP73 ENSGALG00000001006 335 0.985 - - - - - - - 0.985 - - tumor protein p73 [Source:HGNC Symbol;Acc:HGNC:12003]
17. FOCAD ENSGALG00000015071 3677 0.985 - - - - - - - 0.985 - - focadhesin [Source:NCBI gene;Acc:427233]
18. IQCK ENSGALG00000028197 596 0.985 - - - - - - - 0.985 - - IQ motif containing K [Source:HGNC Symbol;Acc:HGNC:28556]
19. DACT1 ENSGALG00000012023 1008 0.985 - - - - - - - 0.985 - - dishevelled binding antagonist of beta catenin 1 [Source:NCBI gene;Acc:723789]
20. KIF21A ENSGALG00000007098 5919 0.985 - - - - - - - 0.985 - - kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
21. NHLRC1 ENSGALG00000012688 1476 0.984 - - - - - - - 0.984 - - NHL repeat containing E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21576]
22. CREG1 ENSGALG00000040426 1188 0.984 - - - - - - - 0.984 - - cellular repressor of E1A stimulated genes 1 [Source:NCBI gene;Acc:768680]
23. RFWD2 1215 0.984 - - - - - - - 0.984 - - ring finger and WD repeat domain 2, transcript variant X6
24. MAN2C1 ENSGALG00000001615 2362 0.984 - - - - - - - 0.984 - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
25. ADAT1 ENSGALG00000000908 1484 0.983 - - - - - - - 0.983 - - adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
26. COMMD8 ENSGALG00000026279 13509 0.983 - - - - - - - 0.983 - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
27. DDX54 ENSGALG00000007490 8729 0.983 - - - - - - - 0.983 - - DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
28. PI4K2B ENSGALG00000031538 2607 0.982 - - - - - - - 0.982 - - phosphatidylinositol 4-kinase type 2 beta [Source:NCBI gene;Acc:422807]
29. ASAH1 ENSGALG00000026364 2783 0.982 - - - - - - - 0.982 - - N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:NCBI gene;Acc:422727]
30. DCAF4 ENSGALG00000009345 2604 0.981 - - - - - - - 0.981 - - DDB1 and CUL4 associated factor 4
31. HGS ENSGALG00000007224 3487 0.981 - - - - - - - 0.981 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:HGNC Symbol;Acc:HGNC:4897]
32. MRPL22 ENSGALG00000003919 2760 0.98 - - - - - - - 0.980 - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
33. PSMC3IP ENSGALG00000019741 5428 0.979 - - - - - - - 0.979 - - PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928]
34. EXOC8 ENSGALG00000043280 3596 0.979 - - - - - - - 0.979 - - exocyst complex component 8 [Source:NCBI gene;Acc:421531]
35. KIF18B ENSGALG00000031553 3192 0.979 - - - - - - - 0.979 - - kinesin family member 18B [Source:NCBI gene;Acc:419968]
36. ERP44 ENSGALG00000013452 5352 0.979 - - - - - - - 0.979 - - endoplasmic reticulum protein 44 [Source:HGNC Symbol;Acc:HGNC:18311]
37. PIGQ ENSGALG00000001985 1584 0.976 - - - - - - - 0.976 - - phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
38. AIF1L ENSGALG00000029834 13866 0.974 - - - - - - - 0.974 - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
39. ZDHHC14 ENSGALG00000013695 2648 0.973 - - - - - - - 0.973 - - zinc finger DHHC-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20341]
40. NUMA1 ENSGALG00000001258 8406 0.971 - - - - - - - 0.971 - - nuclear mitotic apparatus protein 1 [Source:NCBI gene;Acc:768717]
41. COMT ENSGALG00000002024 2483 0.97 - - - - - - - 0.970 - - catechol-O-methyltransferase [Source:HGNC Symbol;Acc:HGNC:2228]
42. COMMD10 ENSGALG00000002308 7442 0.97 - - - - - - - 0.970 - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
43. NDUFA9 ENSGALG00000017282 14358 0.968 - - - - - - - 0.968 - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
44. C14orf1 C14orf1 14289 0.967 - - - - - - - 0.967 - -
45. RERE ENSGALG00000002232 8724 0.967 - - - - - - - 0.967 - - arginine-glutamic acid dipeptide repeats [Source:HGNC Symbol;Acc:HGNC:9965]
46. DRG1 ENSGALG00000006921 10791 0.966 - - - - - - - 0.966 - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
47. ISY1 ENSGALG00000005012 7477 0.958 - - - - - - - 0.958 - - ISY1 splicing factor homolog
48. LIX1 ENSGALG00000015290 7589 0.942 - - - - - - - 0.942 - - limb and CNS expressed 1 [Source:NCBI gene;Acc:374264]
49. BTBD1 ENSGALG00000006020 14157 0.93 - - - - - - - 0.930 - - BTB domain containing 1 [Source:NCBI gene;Acc:415461]
50. BCAR1 ENSGALG00000042895 8222 0.927 - - - - - - - 0.927 - - BCAR1, Cas family scaffold protein [Source:HGNC Symbol;Acc:HGNC:971]
51. HBE 329974 0.926 - - - - - - - 0.926 - - hemoglobin subunit epsilon
52. RABIF ENSGALG00000000436 6449 0.919 - - - - - - - 0.919 - - RAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]
53. RIOK3 ENSGALG00000015004 4249 0.918 - - - - - - - 0.918 - - RIO kinase 3 [Source:HGNC Symbol;Acc:HGNC:11451]
54. EI24 ENSGALG00000038097 24081 0.91 - - - - - - - 0.910 - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
55. ATG3 ENSGALG00000015204 11277 0.9 - - - - - - - 0.900 - - autophagy related 3 [Source:NCBI gene;Acc:418369]
56. PRELP ENSGALG00000034456 4354 0.899 - - - - - - - 0.899 - - proline and arginine rich end leucine rich repeat protein [Source:HGNC Symbol;Acc:HGNC:9357]
57. GREB1 ENSGALG00000016455 12794 0.897 - - - - - - - 0.897 - - growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
58. SGSM3 ENSGALG00000012033 1839 0.895 - - - - - - - 0.895 - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
59. TUBB6 ENSGALG00000031275 17690 0.885 - - - - - - - 0.885 - - tubulin beta 6 class V [Source:NCBI gene;Acc:421037]
60. HRAS1 HRAS1 7988 0.881 - - - - - - - 0.881 - -
61. FYTTD1 ENSGALG00000007581 9341 0.878 - - - - - - - 0.878 - - forty-two-three domain containing 1 [Source:NCBI gene;Acc:424921]
62. ERP29 ENSGALG00000023510 47100 0.877 - - - - - - - 0.877 - - endoplasmic reticulum protein 29 [Source:NCBI gene;Acc:416882]
63. ATP6V1C1 ENSGALG00000034099 9898 0.872 - - - - - - - 0.872 - - ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
64. YTHDF2 ENSGALG00000034831 15118 0.868 - - - - - - - 0.868 - - YTH N6-methyladenosine RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:31675]
65. IP6K2 ENSGALG00000005701 12539 0.863 - - - - - - - 0.863 - - inositol hexakisphosphate kinase 2 [Source:NCBI gene;Acc:416010]
66. PMPCA ENSGALG00000001950 6766 0.858 - - - - - - - 0.858 - - peptidase, mitochondrial processing alpha subunit [Source:NCBI gene;Acc:417134]
67. PDZRN4 ENSGALG00000009530 832 0.856 - - - - - - - - 0.856 - PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]
68. HOXA4 ENSGALG00000022622 22327 0.853 - - - - - - - 0.853 - - homeobox A4 [Source:NCBI gene;Acc:395307]
69. EIF3M ENSGALG00000012109 38661 0.85 - - - - - - - 0.850 - - eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
70. ARPC2 ENSGALG00000011452 7338 0.848 - - - - - - - - 0.848 - actin related protein 2/3 complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:705]
71. DDX46 ENSGALG00000006404 8765 0.844 - - - - - - - 0.844 - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
72. HBG1 HBG1 468163 0.843 - - - - - - - 0.843 - -
73. EHD3 ENSGALG00000009086 14407 0.843 - - - - - - - 0.843 - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
74. GPN2 ENSGALG00000027909 5204 0.842 - - - - - - - 0.842 - - GPN-loop GTPase 2 [Source:HGNC Symbol;Acc:HGNC:25513]
75. DHCR7 ENSGALG00000004106 4731 0.838 - - - - - - - 0.838 - - 7-dehydrocholesterol reductase [Source:NCBI gene;Acc:422982]
76. WASF1 ENSGALG00000015066 5628 0.838 - - - - - - - 0.838 - - WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
77. ZRANB2 ENSGALG00000011340 18994 0.838 - - - - - - - 0.838 - - zinc finger RANBP2-type containing 2 [Source:NCBI gene;Acc:424717]
78. TAF1D ENSGALG00000017220 3012 0.838 - - - - - - - - 0.838 - TATA-box binding protein associated factor, RNA polymerase I subunit D [Source:HGNC Symbol;Acc:HGNC:28759]
79. STOX2 ENSGALG00000010646 1161 0.834 - - - - - - - - 0.834 - storkhead box 2 [Source:HGNC Symbol;Acc:HGNC:25450]
80. BMI1 ENSGALG00000041267 6618 0.833 - - - - - - - 0.833 - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
81. RIN3 ENSGALG00000010806 729 0.833 - - - - - - - - 0.833 - Ras and Rab interactor 3 [Source:HGNC Symbol;Acc:HGNC:18751]
82. F5 ENSGALG00000029298 1850 0.83 - - - - - - - - 0.830 - coagulation factor V [Source:HGNC Symbol;Acc:HGNC:3542]
83. LSM5 ENSGALG00000041625 22307 0.829 - - - - - - - 0.829 - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
84. NEDD4L ENSGALG00000034584 5881 0.828 - - - - - - - 0.828 - - neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, transcript variant X6
85. FASTKD2 ENSGALG00000008529 7439 0.827 - - - - - - - 0.827 - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
86. TPM4 ENSGALG00000002563 15621 0.825 - - - - - - - - 0.825 - tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
87. C15H12ORF49 C15H12ORF49 13250 0.823 - - - - - - - 0.823 - -
88. SLCO4A1 ENSGALG00000005460 109 0.822 - - - - - - - - 0.822 - solute carrier organic anion transporter family member 4A1 [Source:NCBI gene;Acc:419231]
89. CAMKK1 ENSGALG00000001617 64 0.822 - - - - - - - - 0.822 - calcium/calmodulin dependent protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:1469]
90. NTL ENSGALG00000005156 278 0.82 - - - - - - - - 0.820 - neurotrypsin-like, transcript variant X7
91. LRRC59 ENSGALG00000007673 2081 0.818 - - - - - - - - 0.818 - leucine rich repeat containing 59 [Source:NCBI gene;Acc:422103]
92. FKBP15 ENSGALG00000008838 3677 0.816 - - - - - - - - 0.816 - FK506 binding protein 15 [Source:HGNC Symbol;Acc:HGNC:23397]
93. MTMR8 ENSGALG00000007590 6022 0.816 - - - - - - 0.816 - - - myotubularin related protein 8 [Source:NCBI gene;Acc:422312]
94. HSPD1 ENSGALG00000008094 40870 0.811 - - - - - - - 0.811 - - heat shock protein family D (Hsp60) member 1 [Source:NCBI gene;Acc:424059]
95. GNS ENSGALG00000009856 3045 0.81 - - - - - - - - 0.810 - glucosamine (N-acetyl)-6-sulfatase [Source:NCBI gene;Acc:417829]
96. DDRGK1 ENSGALG00000016003 9098 0.807 - - - - - - - - 0.807 - DDRGK domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16110]
97. TAF7 4725 0.806 - - - - - - 0.806 - - - TATA-box binding protein associated factor 7, transcript variant X1
98. CLIP1 ENSGALG00000004467 1058 0.806 - - - - - - - - - 0.806 CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]
99. LHCGR ENSGALG00000009095 174 0.804 - - - - - - - - 0.804 - luteinizing hormone/choriogonadotropin receptor [Source:NCBI gene;Acc:395776]
100. IQCA1 ENSGALG00000003980 87 0.803 - - - - - - - - 0.803 - IQ motif containing with AAA domain 1 [Source:HGNC Symbol;Acc:HGNC:26195]

There are 460 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA