Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SRRT

Gene Name Gene ID Reads Annotation
SRRT ENSG00000087087 9730 serrate, RNA effector molecule [Source:HGNC Symbol;Acc:HGNC:24101]



Genes with expression patterns similar to SRRT

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. SRRT ENSG00000087087 9730 2 1.000 1.000 serrate, RNA effector molecule [Source:HGNC Symbol;Acc:HGNC:24101]
2. FUS ENSG00000089280 23952 0.851 - 0.851 FUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]
3. UBA1 ENSG00000130985 20298 0.831 - 0.831 ubiquitin like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:HGNC:12469]
4. TAF15 ENSG00000270647, ENSG00000276833 10005 0.83 - 0.830 TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
5. HCFC1 ENSG00000172534 21012 0.828 - 0.828 host cell factor C1 [Source:HGNC Symbol;Acc:HGNC:4839]
6. PSME3 ENSG00000131467 10433 0.822 - 0.822 proteasome activator subunit 3 [Source:HGNC Symbol;Acc:HGNC:9570]
7. GPS2 ENSG00000132522 22685 0.822 - 0.822 G protein pathway suppressor 2 [Source:HGNC Symbol;Acc:HGNC:4550]
8. TRIM28 ENSG00000130726 33518 0.816 - 0.816 tripartite motif containing 28 [Source:HGNC Symbol;Acc:HGNC:16384]
9. MED24 ENSG00000008838 7251 0.814 - 0.814 mediator complex subunit 24 [Source:HGNC Symbol;Acc:HGNC:22963]
10. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 314035 0.814 - 0.814 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
11. ATP5SL 25967 0.812 - 0.812 ATP5S like, transcript variant X1
12. CDK16 ENSG00000102225 4372 0.807 - 0.807 cyclin dependent kinase 16 [Source:HGNC Symbol;Acc:HGNC:8749]
13. USP11 ENSG00000102226 8177 0.805 - 0.805 ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]
14. PGD ENSG00000142657 19400 0.804 - 0.804 phosphogluconate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:8891]
15. PRDX2 ENSG00000167815 5248 0.802 - 0.802 peroxiredoxin 2 [Source:HGNC Symbol;Acc:HGNC:9353]
16. MCM5 ENSG00000100297 8452 0.802 - 0.802 minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]
17. DCTN1 ENSG00000204843 19815 0.797 - 0.797 dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]
18. STRN4 ENSG00000090372 7212 0.792 - 0.792 striatin 4 [Source:HGNC Symbol;Acc:HGNC:15721]
19. PKM ENSG00000067225 58854 0.792 - 0.792 pyruvate kinase M1/2 [Source:HGNC Symbol;Acc:HGNC:9021]
20. POLR2E ENSG00000099817 7529 0.789 - 0.789 RNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]
21. SF3B3 ENSG00000189091 8156 0.786 - 0.786 splicing factor 3b subunit 3 [Source:HGNC Symbol;Acc:HGNC:10770]
22. G6PD ENSG00000160211 5383 0.784 - 0.784 glucose-6-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4057]
23. DNMT1 ENSG00000130816 23001 0.783 - 0.783 DNA methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2976]
24. U2AF2 ENSG00000063244 19476 0.78 - 0.780 U2 small nuclear RNA auxiliary factor 2 [Source:HGNC Symbol;Acc:HGNC:23156]
25. PELP1 ENSG00000141456 2409 0.776 - 0.776 proline, glutamate and leucine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:30134]
26. GPS1 ENSG00000169727 2907 0.775 - 0.775 G protein pathway suppressor 1 [Source:HGNC Symbol;Acc:HGNC:4549]
27. MLF2 ENSG00000089693 18042 0.77 - 0.770 myeloid leukemia factor 2 [Source:HGNC Symbol;Acc:HGNC:7126]
28. FOXRED2 ENSG00000100350 5176 0.769 - 0.769 FAD dependent oxidoreductase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26264]
29. CDK2AP2 ENSG00000167797 5955 0.767 - 0.767 cyclin dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:30833]
30. SRSF2 ENSG00000161547 77112 0.765 - 0.765 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
31. HDGF ENSG00000143321 18626 0.762 - 0.762 heparin binding growth factor [Source:HGNC Symbol;Acc:HGNC:4856]
32. CSNK2B ENSG00000204435, ENSG00000206406, ENSG00000224398, ENSG00000224774, ENSG00000228875, ENSG00000230700, ENSG00000232960 15233 0.761 - 0.761 casein kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:2460]
33. TBC1D10B ENSG00000169221 2803 0.76 - 0.760 TBC1 domain family member 10B [Source:HGNC Symbol;Acc:HGNC:24510]
34. ALG3 ENSG00000214160 8221 0.759 - 0.759 ALG3, alpha-1,3- mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23056]
35. CDK5RAP3 ENSG00000108465 6420 0.757 - 0.757 CDK5 regulatory subunit associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18673]
36. CBS ENSG00000160200 15678 0.757 - 0.757 cystathionine-beta-synthase [Source:HGNC Symbol;Acc:HGNC:1550]
37. RAB8A ENSG00000167461 5438 0.756 - 0.756 RAB8A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:7007]
38. USP22 ENSG00000124422 49599 0.756 - 0.756 ubiquitin specific peptidase 22 [Source:HGNC Symbol;Acc:HGNC:12621]
39. NT5DC2 ENSG00000168268 9618 0.756 - 0.756 5'-nucleotidase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25717]
40. SF3B2 ENSG00000087365 6044 0.755 - 0.755 splicing factor 3b subunit 2 [Source:HGNC Symbol;Acc:HGNC:10769]
41. PSMC4 ENSG00000013275, ENSG00000281221 6978 0.755 - 0.755 proteasome 26S subunit, ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9551]
42. EEF2 ENSG00000167658 47680 0.755 - 0.755 eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]
43. SMYD5 ENSG00000135632 1314 0.752 - 0.752 SMYD family member 5 [Source:HGNC Symbol;Acc:HGNC:16258]
44. ACTR1A ENSG00000138107 7033 0.752 - 0.752 ARP1 actin related protein 1 homolog A [Source:HGNC Symbol;Acc:HGNC:167]
45. PPP2R1A ENSG00000105568 13029 0.75 - 0.750 protein phosphatase 2 scaffold subunit Aalpha [Source:HGNC Symbol;Acc:HGNC:9302]
46. CSK ENSG00000103653 5441 0.749 - 0.749 C-terminal Src kinase [Source:HGNC Symbol;Acc:HGNC:2444]
47. PPME1 ENSG00000214517 4946 0.748 - 0.748 protein phosphatase methylesterase 1 [Source:HGNC Symbol;Acc:HGNC:30178]
48. NOP9 ENSG00000196943, ENSG00000285326 4741 0.746 - 0.746 NOP9 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:19826]
49. HNRNPUL1 ENSG00000105323 23988 0.746 - 0.746 heterogeneous nuclear ribonucleoprotein U like 1 [Source:HGNC Symbol;Acc:HGNC:17011]
50. DPM2 ENSG00000136908 1443 0.746 - 0.746 dolichyl-phosphate mannosyltransferase subunit 2, regulatory [Source:HGNC Symbol;Acc:HGNC:3006]
51. CDCA4 ENSG00000170779 11879 0.744 - 0.744 cell division cycle associated 4 [Source:HGNC Symbol;Acc:HGNC:14625]
52. GLIS2 ENSG00000126603, ENSG00000274636 5556 0.744 - 0.744 GLIS family zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:29450]
53. EIF5A ENSG00000132507 27570 0.743 - 0.743 eukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:HGNC:3300]
54. SMARCA4 ENSG00000127616 21398 0.742 - 0.742 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
55. PKNOX2 ENSG00000165495 3717 0.742 - 0.742 PBX/knotted 1 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:16714]
56. FTO ENSG00000140718 19943 0.742 - 0.742 FTO, alpha-ketoglutarate dependent dioxygenase [Source:HGNC Symbol;Acc:HGNC:24678]
57. HNRNPD ENSG00000138668 117280 0.741 - 0.741 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
58. EHMT2 ENSG00000204371, ENSG00000206376, ENSG00000224143, ENSG00000227333, ENSG00000232045, ENSG00000236759, ENSG00000238134 6990 0.741 - 0.741 euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
59. EPN1 ENSG00000063245 5192 0.741 - 0.741 epsin 1 [Source:HGNC Symbol;Acc:HGNC:21604]
60. MARCKSL1 ENSG00000175130 73054 0.74 - 0.740 MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]
61. BANF1 ENSG00000175334 19847 0.739 - 0.739 barrier to autointegration factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]
62. TNPO2 ENSG00000105576 7612 0.739 - 0.739 transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
63. DBN1 ENSG00000113758 12842 0.738 - 0.738 drebrin 1 [Source:HGNC Symbol;Acc:HGNC:2695]
64. TECR ENSG00000099797 4028 0.738 - 0.738 trans-2,3-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:4551]
65. HSP90AB1 ENSG00000096384 183977 0.737 - 0.737 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
66. GFPT2 ENSG00000131459 2934 0.737 - 0.737 glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]
67. HMGA1 ENSG00000137309 9117 0.737 - 0.737 high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010]
68. HOXC5 ENSG00000172789, ENSG00000273046 4001 0.737 - 0.737 homeobox C5 [Source:NCBI gene;Acc:3222]
69. PATL1 ENSG00000166889 11962 0.736 - 0.736 PAT1 homolog 1, processing body mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:26721]
70. HOXC6 ENSG00000197757 13409 0.736 - 0.736 homeobox C6 [Source:HGNC Symbol;Acc:HGNC:5128]
71. CUTA ENSG00000112514, ENSG00000226492 17547 0.736 - 0.736 cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
72. SAFB ENSG00000160633 7035 0.735 - 0.735 scaffold attachment factor B [Source:HGNC Symbol;Acc:HGNC:10520]
73. ULK1 ENSG00000177169 6408 0.735 - 0.735 unc-51 like autophagy activating kinase 1 [Source:HGNC Symbol;Acc:HGNC:12558]
74. NDUFS2 ENSG00000158864 10441 0.735 - 0.735 NADH:ubiquinone oxidoreductase core subunit S2 [Source:HGNC Symbol;Acc:HGNC:7708]
75. RBM14 ENSG00000239306 4301 0.734 - 0.734 RNA binding motif protein 14 [Source:HGNC Symbol;Acc:HGNC:14219]
76. PDAP1 ENSG00000106244 8971 0.734 - 0.734 PDGFA associated protein 1 [Source:HGNC Symbol;Acc:HGNC:14634]
77. TAF6 ENSG00000106290 8475 0.733 - 0.733 TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]
78. FSCN1 ENSG00000075618 34169 0.733 - 0.733 fascin actin-bundling protein 1 [Source:HGNC Symbol;Acc:HGNC:11148]
79. PLK1 ENSG00000166851 4839 0.732 - 0.732 polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]
80. TUBA1B ENSG00000123416 396924 0.732 - 0.732 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
81. MCM7 ENSG00000166508 22547 0.732 - 0.732 minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]
82. CTDNEP1 ENSG00000175826 15483 0.732 - 0.732 CTD nuclear envelope phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:19085]
83. SNRPA ENSG00000077312 4577 0.731 - 0.731 small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:HGNC:11151]
84. TSC2 ENSG00000103197 7240 0.731 - 0.731 TSC complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:12363]
85. TRAP1 ENSG00000126602 7214 0.731 - 0.731 TNF receptor associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16264]
86. SLC25A39 ENSG00000013306 12058 0.73 - 0.730 solute carrier family 25 member 39 [Source:HGNC Symbol;Acc:HGNC:24279]
87. ASF1B ENSG00000105011 6283 0.73 - 0.730 anti-silencing function 1B histone chaperone [Source:HGNC Symbol;Acc:HGNC:20996]
88. MEN1 ENSG00000133895 2179 0.73 - 0.730 menin 1 [Source:HGNC Symbol;Acc:HGNC:7010]
89. MKI67 ENSG00000148773 12368 0.728 - 0.728 marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]
90. OTUB1 ENSG00000167770 22747 0.728 - 0.728 OTU deubiquitinase, ubiquitin aldehyde binding 1 [Source:HGNC Symbol;Acc:HGNC:23077]
91. CIZ1 ENSG00000148337 3149 0.728 - 0.728 CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
92. TROAP ENSG00000135451 5590 0.728 - 0.728 trophinin associated protein [Source:HGNC Symbol;Acc:HGNC:12327]
93. RBM8A ENSG00000265241 18888 0.727 - 0.727 RNA binding motif protein 8A [Source:HGNC Symbol;Acc:HGNC:9905]
94. VPS72 ENSG00000163159 11202 0.727 - 0.727 vacuolar protein sorting 72 homolog [Source:HGNC Symbol;Acc:HGNC:11644]
95. TBCB ENSG00000105254 27421 0.726 - 0.726 tubulin folding cofactor B [Source:HGNC Symbol;Acc:HGNC:1989]
96. PSMF1 ENSG00000125818 7090 0.726 - 0.726 proteasome inhibitor subunit 1 [Source:HGNC Symbol;Acc:HGNC:9571]
97. AAAS ENSG00000094914 7598 0.725 - 0.725 aladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]
98. ARF3 ENSG00000134287 6922 0.724 - 0.724 ADP ribosylation factor 3 [Source:HGNC Symbol;Acc:HGNC:654]
99. C19orf54 ENSG00000188493 1498 0.724 - 0.724 chromosome 19 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:24758]
100. MAPKAPK2 ENSG00000162889 3232 0.724 - 0.724 mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]

There are 48 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA