Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SRRM1

Gene Name Gene ID Reads Annotation
SRRM1 ENSGALG00000001283 23820 serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]











Genes with expression patterns similar to SRRM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SRRM1 ENSGALG00000001283 23820 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]
2. TERF2 ENSGALG00000000657 7865 1.691 - - - - - - 0.750 0.941 - - telomeric repeat binding factor 2 [Source:NCBI gene;Acc:395598]
3. MAP3K7 ENSGALG00000015596 15164 1.55 - - - - 0.712 - 0.838 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
4. SFPQ ENSGALG00000002514 66832 1.538 - - - - - 0.762 0.776 - - - splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
5. METAP2 ENSGALG00000011377 16311 1.538 - - - - - 0.709 0.829 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
6. MCTS1 ENSGALG00000008517 27514 0.93 - - - - - - 0.930 - - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
7. STARD3NL ENSGALG00000033038 4851 0.929 - - - - - - - 0.929 - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
8. UQCRC1 ENSGALG00000005789 23201 0.91 - - - - - - 0.910 - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
9. CASP3 ENSGALG00000010638 11572 0.91 - - - - - - 0.910 - - - caspase 3 [Source:NCBI gene;Acc:395476]
10. SNRNP40 ENSGALG00000000615 32298 0.909 - - - - - - 0.909 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
11. GSPT1 15580 0.909 - - - - - - 0.909 - - - G1 to S phase transition 1, transcript variant X1
12. KDM5B ENSGALG00000038948 50645 0.903 - - - - - - 0.903 - - - lysine demethylase 5B [Source:NCBI gene;Acc:421168]
13. MRPL54 ENSGALG00000027611 39450 0.902 - - - - - - 0.902 - - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
14. KDELR2 ENSGALG00000040793 29669 0.892 - - - - - - 0.892 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
15. EIF4A2 ENSGALG00000008684 58507 0.886 - - - - - - 0.886 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
16. WDR61 ENSGALG00000003221 11352 0.886 - - - - - - 0.886 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
17. UBE2G2 ENSGALG00000005667 12689 0.884 - - - - - - 0.884 - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
18. RAD21 ENSGALG00000029523 25658 0.883 - - - - - - 0.883 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
19. SCP2 ENSGALG00000010652 19563 0.881 - - - - - - 0.881 - - - sterol carrier protein 2 [Source:NCBI gene;Acc:396550]
20. RPL35 ENSGALG00000035677 252113 0.881 - - - - - - 0.881 - - - ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. SMC4 ENSGALG00000009553 15715 0.877 - - - - - - 0.877 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
22. RBBP4 ENSGALG00000003522 72455 0.877 - - - - - - 0.877 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
23. GLRX3 ENSGALG00000010464 22578 0.874 - - - - - - 0.874 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
24. ARPC1A ENSGALG00000004693 11583 0.874 - - - - - - 0.874 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
25. WTAP ENSGALG00000011660 10811 0.874 - - - - - - 0.874 - - - WT1 associated protein [Source:HGNC Symbol;Acc:HGNC:16846]
26. SRSF6 ENSGALG00000000990 12424 0.872 - - - - - - 0.872 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
27. TMEM115 ENSGALG00000026965 13050 0.871 - - - - - - 0.871 - - - transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]
28. CPSF6 ENSGALG00000019355 7634 0.869 - - - - - - 0.869 - - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
29. AP2A2 ENSGALG00000006799 13874 0.869 - - - - - - 0.869 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
30. RAD23B ENSGALG00000015540 10828 0.866 - - - - - - 0.866 - - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
31. FKBP12 FKBP12 64317 0.866 - - - - - - 0.866 - - -
32. TOMM20 ENSGALG00000035299 23431 0.866 - - - - - - 0.866 - - - translocase of outer mitochondrial membrane 20 [Source:HGNC Symbol;Acc:HGNC:20947]
33. LMAN1 ENSGALG00000034821 12788 0.866 - - - - - - 0.866 - - - lectin, mannose binding 1 [Source:NCBI gene;Acc:426849]
34. GLRX5 ENSGALG00000011079 28943 0.864 - - - - - - 0.864 - - - glutaredoxin 5 [Source:NCBI gene;Acc:423440]
35. KCTD2 ENSGALG00000007934 15085 0.863 - - - - - - 0.863 - - - potassium channel tetramerization domain containing 2 [Source:NCBI gene;Acc:422116]
36. NDUFAF1 ENSGALG00000008587 14779 0.86 - - - - - - 0.860 - - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
37. PSMD12 ENSGALG00000026225 17473 0.86 - - - - - - 0.860 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
38. GNL3 ENSGALG00000001613 10911 0.859 - - - - - - 0.859 - - - G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]
39. RRP9 ENSGALG00000043359 9747 0.856 - - - - - - 0.856 - - - ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
40. YWHAZ ENSGALG00000031387 84985 0.856 - - - - - - 0.856 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
41. SSU72 ENSGALG00000001489 7589 0.856 - - - - - - 0.856 - - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
42. DERL1 ENSGALG00000033950 15074 0.855 - - - - - - 0.855 - - - derlin 1 [Source:NCBI gene;Acc:420350]
43. SSR3 ENSGALG00000028683 24334 0.855 - - - - - - 0.855 - - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
44. PARP1 ENSGALG00000009228 39433 0.855 - - - - - - 0.855 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
45. RANBP1 ENSGALG00000002107 17715 0.855 - - - - - - 0.855 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
46. MED17 ENSGALG00000017218 5821 0.853 - - - - - - 0.853 - - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
47. RPS3A ENSGALG00000010077 292185 0.853 - - - - - - 0.853 - - - ribosomal protein S3A [Source:NCBI gene;Acc:422477]
48. C1QBP ENSGALG00000001654 34814 0.852 - - - - - - 0.852 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
49. SBNO1 ENSGALG00000003392 6731 0.851 - - - - - - 0.851 - - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
50. ILF2 ENSGALG00000011570 23050 0.85 - - - - - - 0.850 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
51. CENPK ENSGALG00000014753 12414 0.849 - - - - - - 0.849 - - - centromere protein K [Source:NCBI gene;Acc:427162]
52. PTP4A2 ENSGALG00000003265 24826 0.848 - - - - - - 0.848 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
53. SKP2 ENSGALG00000003547 14637 0.844 - - - - - - 0.844 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
54. LYPLA1 ENSGALG00000040421 14720 0.843 - - - - - - 0.843 - - - lysophospholipase I [Source:HGNC Symbol;Acc:HGNC:6737]
55. CAP1 ENSGALG00000036294 18598 0.843 - - - - - - 0.843 - - - cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]
56. SPCS3 ENSGALG00000010839 19106 0.843 - - - - - - 0.843 - - - signal peptidase complex subunit 3 [Source:NCBI gene;Acc:396234]
57. NDUFAB1 ENSGALG00000006073 40467 0.842 - - - - - - 0.842 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
58. C1H12ORF23 C1H12ORF23 13234 0.842 - - - - - - 0.842 - - -
59. PSMB7 ENSGALG00000001103 42683 0.841 - - - - - - 0.841 - - - proteasome subunit beta 7 [Source:NCBI gene;Acc:378915]
60. EIF2B EIF2B 28702 0.841 - - - - - - 0.841 - - -
61. GLO1 ENSGALG00000010127 31662 0.841 - - - - - - 0.841 - - - glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
62. BRP44 BRP44 17093 0.84 - - - - - - 0.840 - - -
63. CYB5R2 ENSGALG00000032372 7967 0.84 - - - - - - 0.840 - - - cytochrome b5 reductase 2 [Source:NCBI gene;Acc:408182]
64. PPP1CC ENSGALG00000004571 14748 0.839 - - - - - - 0.839 - - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
65. RBP5 ENSGALG00000014662 31268 0.838 - - - - - - 0.838 - - - retinol binding protein 5 [Source:NCBI gene;Acc:418296]
66. NXN 20202 0.838 - - - - - - 0.838 - - - nucleoredoxin, transcript variant X1
67. MOSPD1 ENSGALG00000006132 8503 0.838 - - - - - - 0.838 - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
68. RABGGTB ENSGALG00000011388 11654 0.838 - - - - - - 0.838 - - - Rab geranylgeranyltransferase subunit beta [Source:HGNC Symbol;Acc:HGNC:9796]
69. PSMD3 ENSGALG00000033162 25615 0.836 - - - - - - 0.836 - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
70. TMEM70 ENSGALG00000033568 10720 0.836 - - - - - - 0.836 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
71. SLC25A17 ENSGALG00000012013 13948 0.835 - - - - - - 0.835 - - - solute carrier family 25 member 17 [Source:HGNC Symbol;Acc:HGNC:10987]
72. SLC25A3 ENSGALG00000011514 62606 0.835 - - - - - - 0.835 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
73. SRP9 ENSGALG00000026009 12418 0.834 - - - - - - 0.834 - - - signal recognition particle 9 [Source:NCBI gene;Acc:770243]
74. HMGB2 ENSGALG00000010745 89235 0.834 - - - - - - 0.834 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
75. DGCR2 ENSGALG00000005891 8405 0.834 - - - - - - 0.834 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
76. MAGT1 ENSGALG00000007861 9105 0.833 - - - - - - 0.833 - - - magnesium transporter 1 [Source:NCBI gene;Acc:422332]
77. PNRC2 ENSGALG00000004122 19228 0.833 - - - - - - 0.833 - - - proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
78. LIMD1 ENSGALG00000035623 7282 0.832 - - - - - - 0.832 - - - LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
79. NEK6 ENSGALG00000001118 20333 0.832 - - - - - - 0.832 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
80. TRAPPC2 ENSGALG00000016578 8749 0.831 - - - - - - 0.831 - - - trafficking protein particle complex 2 [Source:NCBI gene;Acc:418634]
81. SNX4 ENSGALG00000012052 11634 0.831 - - - - - - 0.831 - - - sorting nexin 4 [Source:HGNC Symbol;Acc:HGNC:11175]
82. VBP1 VBP1 14482 0.831 - - - - - - 0.831 - - -
83. HSPA4 ENSGALG00000040882 20966 0.83 - - - - - - 0.830 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
84. ID1 ENSGALG00000034661 44524 0.83 - - - - - - 0.830 - - - inhibitor of DNA binding 1, HLH protein [Source:NCBI gene;Acc:395282]
85. BNIP3L ENSGALG00000043405 10316 0.83 - - - - - - 0.830 - - - BCL2 interacting protein 3 like [Source:NCBI gene;Acc:419522]
86. XPO1 ENSGALG00000029476 9526 0.829 - - - - - - 0.829 - - - exportin 1 [Source:NCBI gene;Acc:421192]
87. MRPS17 ENSGALG00000002379 30243 0.829 - - - - - - 0.829 - - - mitochondrial ribosomal protein S17 [Source:NCBI gene;Acc:417538]
88. RAB11B ENSGALG00000000613 20696 0.828 - - - - - - 0.828 - - - RAB11B, member RAS oncogene family [Source:NCBI gene;Acc:420063]
89. NUP50 ENSGALG00000014222 11743 0.828 - - - - - - 0.828 - - - nucleoporin 50 [Source:NCBI gene;Acc:418240]
90. UQCRC2 ENSGALG00000002490 23477 0.828 - - - - - - 0.828 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
91. BET1L ENSGALG00000004172 5305 0.828 - - - - - - 0.828 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
92. PPP1R2 ENSGALG00000029789 11594 0.828 - - - - - - 0.828 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
93. COX7C ENSGALG00000027963 84312 0.827 - - - - - - 0.827 - - - cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
94. APLP2 ENSGALG00000001250 22253 0.827 - - - - - - 0.827 - - - amyloid beta precursor like protein 2 [Source:NCBI gene;Acc:419727]
95. QTRTD1 QTRTD1 10765 0.826 - - - - - - 0.826 - - -
96. ATP2B1 ENSGALG00000030550 15123 0.825 - - - - - - 0.825 - - - ATPase plasma membrane Ca2+ transporting 1 [Source:NCBI gene;Acc:374244]
97. HCCS ENSGALG00000005571 4939 0.825 - - - - - - 0.825 - - - holocytochrome c synthase [Source:NCBI gene;Acc:424482]
98. SIKE1 ENSGALG00000002147 20836 0.825 - - - - - - 0.825 - - - suppressor of IKBKE 1 [Source:NCBI gene;Acc:419887]
99. SKAP2 ENSGALG00000030081 13746 0.825 - - - - - - 0.825 - - - src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:HGNC:15687]
100. LOC776067 ENSGALG00000016808 9164 0.825 - - - - - - 0.825 - - - E3 SUMO-protein ligase RanBP2-like, transcript variant X50

There are 746 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA