Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SRR

Gene Name Gene ID Reads Annotation
SRR SRR 544










Genes with expression patterns similar to SRR

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SRR SRR 544 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. si:ch211-132g1.3 ENSDARG00000089477 769 1.904 - - - - 0.998 - - - 0.906 si:ch211-132g1.3 [Source:ZFIN;Acc:ZDB-GENE-090312-148]
3. ZBTB22 ZBTB22 1053 1.892 0.894 - - - 0.998 - - - -
4. uap1 ENSDARG00000052170 1168 1.8 - - - - 0.994 - - - 0.806 UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1233]
5. pgls ENSDARG00000021233 264 1.772 0.860 - - - - - - - 0.912 6-phosphogluconolactonase [Source:ZFIN;Acc:ZDB-GENE-040822-9]
6. CR762484.3 CR762484.3 395 1.761 0.886 - - - - - - - 0.875
7. slc27a6 ENSDARG00000046053 57 1.731 0.933 - - - - - 0.798 - - solute carrier family 27 (fatty acid transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-060825-27]
8. si:ch211-239j9.1 ENSDARG00000096319 27 1.727 0.881 - - - - - 0.846 - - si:ch211-239j9.1 [Source:ZFIN;Acc:ZDB-GENE-120215-212]
9. slc6a13 369 1.719 - - - - - - 0.835 0.884 - solute carrier family 6 (neurotransmitter transporter), member 13, transcript variant X1
10. CCDC132 CCDC132 267 1.707 0.870 - - - - - - - 0.837
11. ftsjd2 ftsjd2 2694 1.697 0.701 - - - 0.996 - - - -
12. BX649554.3_1 BX649554.3_1 1071 1.683 - 0.720 - - - - - - 0.963
13. si:ch211-283g2.1 ENSDARG00000046091 123 1.67 0.819 - - - - - - - 0.851 si:ch211-283g2.1 [Source:ZFIN;Acc:ZDB-GENE-060531-57]
14. strumpellin 212 1.668 0.849 0.819 - - - - - - - strumpellin
15. npr1b ENSDARG00000018750 174 1.659 0.806 - - - - - - - 0.853 natriuretic peptide receptor 1b [Source:ZFIN;Acc:ZDB-GENE-100805-4]
16. C5H9orf117 C5H9orf117 88 1.651 - 0.709 - - - - - - 0.942
17. si:dkeyp-19e1.3 ENSDARG00000051836 531 1.642 0.758 - - - - - - - 0.884 si:dkeyp-19e1.3 [Source:ZFIN;Acc:ZDB-GENE-081104-56]
18. rnf103 ENSDARG00000100850 277 1.64 - 0.792 - - - 0.848 - - - ring finger protein 103 [Source:ZFIN;Acc:ZDB-GENE-040912-171]
19. ptpn4b ENSDARG00000000183 425 1.637 - - - - - - 0.850 - 0.787 protein tyrosine phosphatase, non-receptor type 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]
20. trappc9 ENSDARG00000103106 460 1.637 0.832 - - - - - - 0.805 - trafficking protein particle complex 9 [Source:ZFIN;Acc:ZDB-GENE-070705-261]
21. znf653 ENSDARG00000093469 149 1.613 - 0.788 - - - - 0.825 - - zinc finger protein 653 [Source:ZFIN;Acc:ZDB-GENE-071116-3]
22. stat2 ENSDARG00000031647, ENSDARG00000116348 441 1.612 - 0.732 - - - - - - 0.880 signal transducer and activator of transcription 2 [Source:ZFIN;Acc:ZDB-GENE-080321-1]
23. cecr1a 836 1.611 - 0.776 - - - - - - 0.835 cat eye syndrome chromosome region, candidate 1a
24. RNF223 93 1.597 0.830 0.767 - - - - - - - ring finger protein 223
25. rnf123 ENSDARG00000031269 519 1.592 0.880 - - - - 0.712 - - - ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
26. b3galtla b3galtla 111 1.587 0.780 - - - - - 0.807 - -
27. calr ENSDARG00000076290 13987 1.57 - - - - 0.861 - - 0.709 - calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
28. rab8a ENSDARG00000067920 975 1.556 0.800 - - - - - - - 0.756 RAB8A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070424-36]
29. tph1a ENSDARG00000029432, ENSDARG00000114918 24 1.545 - - - - - - 0.836 0.709 - tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a [Source:ZFIN;Acc:ZDB-GENE-030317-1]
30. casc1 ENSDARG00000016815 99 1.528 - 0.719 - - - - - - 0.809 cancer susceptibility candidate 1 [Source:ZFIN;Acc:ZDB-GENE-041210-153]
31. sdf2l1 ENSDARG00000035631 615 1.528 - 0.793 - - - - - - 0.735 stromal cell-derived factor 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-46]
32. snx8a ENSDARG00000074842 411 1.528 - - - - - 0.707 - - 0.821 sorting nexin 8a [Source:ZFIN;Acc:ZDB-GENE-031202-1]
33. cmyb cmyb 274 1.523 0.775 0.748 - - - - - - -
34. NECAB3 ENSDARG00000074794 379 1.519 0.779 0.740 - - - - - - - N-terminal EF-hand calcium binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-131121-74]
35. rb1 ENSDARG00000006782 1445 1.513 0.725 - - - - - - - 0.788 retinoblastoma 1 [Source:ZFIN;Acc:ZDB-GENE-040428-1]
36. wdr65 wdr65 251 1.509 - 0.757 - - - - - - 0.752
37. esrra ENSDARG00000069266 84 1.506 - 0.739 - - - - 0.767 - - estrogen-related receptor alpha [Source:ZFIN;Acc:ZDB-GENE-990415-68]
38. smarcal1 ENSDARG00000102265 1921 1.501 0.768 - - - - - 0.733 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:ZFIN;Acc:ZDB-GENE-041210-303]
39. s100s ENSDARG00000036773 90 1.494 - - - - - 0.788 0.706 - - S100 calcium binding protein S [Source:ZFIN;Acc:ZDB-GENE-040822-31]
40. PELI3 ENSDARG00000087452, ENSDARG00000111338 166 1.493 0.766 0.727 - - - - - - - pellino E3 ubiquitin protein ligase family member 3 [Source:ZFIN;Acc:ZDB-GENE-110304-4]
41. rtn4rl1a ENSDARG00000007856 242 1.479 0.726 0.753 - - - - - - - reticulon 4 receptor-like 1a [Source:ZFIN;Acc:ZDB-GENE-091118-38]
42. ssx2ip ssx2ip 482 1.47 - 0.737 - - - - - - 0.733
43. dnph1 ENSDARG00000075730 403 1.462 0.738 0.724 - - - - - - - 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-081107-5]
44. cx28.8 ENSDARG00000071042 62 1.461 - 0.703 - - - - 0.758 - - connexin 28.8 [Source:ZFIN;Acc:ZDB-GENE-050616-1]
45. cox16 ENSDARG00000039136 1066 1.452 0.746 0.706 - - - - - - - cytochrome c oxidase assembly factor COX16 [Source:ZFIN;Acc:ZDB-GENE-050417-60]
46. si:ch211-285f17.1 ENSDARG00000059333 255 1.443 - 0.737 - - - 0.706 - - - si:ch211-285f17.1 [Source:ZFIN;Acc:ZDB-GENE-000607-77]
47. saga ENSDARG00000012610 63 1.435 - - - - - 0.727 - 0.708 - S-antigen; retina and pineal gland (arrestin) a [Source:ZFIN;Acc:ZDB-GENE-040426-1538]
48. ube3c ENSDARG00000035978, ENSDARG00000112229 787 1.416 - - - - - - 0.702 - 0.714 ubiquitin protein ligase E3C [Source:ZFIN;Acc:ZDB-GENE-040426-1211]
49. SEMA5B SEMA5B 1316 1.416 0.708 - - - - - - - 0.708
50. zgc:174906 ENSDARG00000075314 2187 1.406 - 0.704 - - 0.702 - - - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
51. d2hgdh ENSDARG00000060210 362 0.999 - - - - 0.999 - - - - D-2-hydroxyglutarate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-070112-482]
52. si:ch211-223a21.1 ENSDARG00000098892 306 0.999 - - - - 0.999 - - - - si:ch211-223a21.1 [Source:ZFIN;Acc:ZDB-GENE-110913-137]
53. MEX3D MEX3D 293 0.999 - - - - 0.999 - - - -
54. TIMM21 ENSDARG00000071594 722 0.998 - - - - 0.998 - - - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
55. rc3h1 rc3h1 1087 0.998 - - - - 0.998 - - - -
56. aclya ENSDARG00000099079 2324 0.998 - - - - 0.998 - - - - ATP citrate lyase a [Source:ZFIN;Acc:ZDB-GENE-031113-1]
57. mccc1 ENSDARG00000102538, ENSDARG00000115996 2069 0.998 - - - - 0.998 - - - - methylcrotonoyl-CoA carboxylase 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-050208-450]
58. asah1a ENSDARG00000037091, ENSDARG00000112187 390 0.998 - - - - 0.998 - - - - N-acylsphingosine amidohydrolase (acid ceramidase) 1a [Source:ZFIN;Acc:ZDB-GENE-041010-191]
59. e2f5 ENSDARG00000038812 388 0.998 - - - - 0.998 - - - - E2F transcription factor 5 [Source:ZFIN;Acc:ZDB-GENE-030828-3]
60. drgx ENSDARG00000069329 610 0.997 - - - - 0.997 - - - - dorsal root ganglia homeobox [Source:ZFIN;Acc:ZDB-GENE-070330-1]
61. sptlc2a ENSDARG00000018976 937 0.997 - - - - 0.997 - - - - serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]
62. pold1 ENSDARG00000027689 1148 0.997 - - - - 0.997 - - - - polymerase (DNA directed), delta 1, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060429-1]
63. rad50 ENSDARG00000038917 1105 0.997 - - - - 0.997 - - - - RAD50 homolog, double strand break repair protein [Source:ZFIN;Acc:ZDB-GENE-050506-110]
64. ift140 ENSDARG00000031886 573 0.997 - - - - 0.997 - - - - intraflagellar transport 140 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040724-165]
65. cdc26 ENSDARG00000077815, ENSDARG00000115575 1460 0.997 - - - - 0.997 - - - - cell division cycle 26 homolog [Source:ZFIN;Acc:ZDB-GENE-040822-18]
66. CCDC106 CCDC106 1908 0.997 - - - - 0.997 - - - -
67. zgc:66443 ENSDARG00000057707 624 0.997 - - - - 0.997 - - - - zgc:66443 [Source:ZFIN;Acc:ZDB-GENE-040426-2945]
68. TANC2 TANC2 1104 0.996 - - - - 0.996 - - - -
69. CABZ01076275.1 ENSDARG00000100753 5137 0.996 - - - - 0.996 - - - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
70. dbx2 2971 0.996 - - - - 0.996 - - - - developing brain homeobox 2
71. rnf185 ENSDARG00000032997 1490 0.996 - - - - 0.996 - - - - ring finger protein 185 [Source:ZFIN;Acc:ZDB-GENE-040426-1977]
72. ppm1la ENSDARG00000063218 2142 0.996 - - - - 0.996 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
73. chd2 ENSDARG00000060687 3832 0.996 - - - - 0.996 - - - - chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
74. C7H4orf48 C7H4orf48 1455 0.996 - - - - 0.996 - - - -
75. scocb ENSDARG00000002217 1844 0.996 - - - - 0.996 - - - - short coiled-coil protein b [Source:ZFIN;Acc:ZDB-GENE-041010-41]
76. parp12b ENSDARG00000057974, ENSDARG00000115844 1435 0.996 - - - - 0.996 - - - - poly (ADP-ribose) polymerase family, member 12b [Source:ZFIN;Acc:ZDB-GENE-030131-2617]
77. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 0.995 - - - - 0.995 - - - - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
78. hsf2 ENSDARG00000053097 1188 0.995 - - - - 0.995 - - - - heat shock transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-011128-1]
79. ttc14 ENSDARG00000013845 1192 0.995 - - - - 0.995 - - - - tetratricopeptide repeat domain 14 [Source:ZFIN;Acc:ZDB-GENE-050327-26]
80. grasp ENSDARG00000000588, ENSDARG00000113330 766 0.995 - - - - 0.995 - - - - GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
81. kidins220b ENSDARG00000017338 1937 0.995 - - - - 0.995 - - - - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
82. cicb ENSDARG00000055502 1356 0.995 - - - - 0.995 - - - - capicua transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-030131-1966]
83. MAP4_1 MAP4_1 1153 0.995 - - - - 0.995 - - - -
84. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 0.995 - - - - 0.995 - - - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
85. dgkh ENSDARG00000018716 795 0.995 - - - - 0.995 - - - - diacylglycerol kinase, eta [Source:ZFIN;Acc:ZDB-GENE-070912-328]
86. lppr3a lppr3a 1294 0.995 - - - - 0.995 - - - -
87. rbm28 ENSDARG00000025332 2685 0.995 - - - - 0.995 - - - - RNA binding motif protein 28 [Source:ZFIN;Acc:ZDB-GENE-040426-960]
88. pmm2 ENSDARG00000037654 1783 0.994 - - - - 0.994 - - - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
89. desi2 ENSDARG00000004460 1593 0.994 - - - - 0.994 - - - - desumoylating isopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-39]
90. stm ENSDARG00000035694 1567 0.994 - - - - 0.994 - - - - starmaker [Source:ZFIN;Acc:ZDB-GENE-031112-4]
91. rhot1a ENSDARG00000099996 2059 0.994 - - - - 0.994 - - - - ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]
92. anapc10 ENSDARG00000090152 1406 0.994 - - - - 0.994 - - - - anaphase promoting complex subunit 10 [Source:ZFIN;Acc:ZDB-GENE-060224-2]
93. slc35d2 ENSDARG00000089837 1606 0.994 - - - - 0.994 - - - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
94. pik3r1 ENSDARG00000038524 3615 0.994 - - - - 0.994 - - - - phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-1280]
95. e2f7 ENSDARG00000008986 1439 0.994 - - - - 0.994 - - - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
96. slc2a3a ENSDARG00000013295 2449 0.994 - - - - 0.994 - - - - solute carrier family 2 (facilitated glucose transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-040718-390]
97. MAPRE2 ENSDARG00000099943 3041 0.993 - - - - 0.993 - - - - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
98. pdcd6ip ENSDARG00000025269 2522 0.993 - - - - 0.993 - - - - programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
99. cercam ENSDARG00000079049, ENSDARG00000109573 2228 0.993 - - - - 0.993 - - - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
100. pdia4 ENSDARG00000018491 1914 0.993 - - - - 0.993 - - - - protein disulfide isomerase family A, member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5493]

There are 1230 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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