Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SRM

Gene Name Gene ID Reads Annotation
SRM ENSGALG00000003039 8331 spermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]











Genes with expression patterns similar to SRM

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SRM ENSGALG00000003039 8331 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 spermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]
2. NF2 ENSGALG00000008073 4597 0.971 - - - - - - - 0.971 - - neurofibromin 2 [Source:NCBI gene;Acc:395158]
3. TRIAP1 ENSGALG00000007199 4921 0.968 - - - - - - - 0.968 - - TP53 regulated inhibitor of apoptosis 1 [Source:NCBI gene;Acc:416977]
4. PCMT1 ENSGALG00000012388 7778 0.966 - - - - - - - 0.966 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:NCBI gene;Acc:428607]
5. USP1 ENSGALG00000010957 8297 0.959 - - - - - - - 0.959 - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
6. C9orf85 ENSGALG00000026001 4110 0.958 - - - - - - - 0.958 - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
7. PSMG3 ENSGALG00000004203 11240 0.95 - - - - - - - 0.950 - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
8. GNL3 ENSGALG00000001613 10911 0.949 - - - - - - - 0.949 - - G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]
9. NOLC1 ENSGALG00000041124 12765 0.941 - - - - - - - 0.941 - - nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]
10. UBL3 ENSGALG00000017084 7417 0.939 - - - - - - - 0.939 - - ubiquitin like 3 [Source:NCBI gene;Acc:418921]
11. SMS ENSGALG00000016379 11607 0.878 - - - - - - - 0.878 - - spermine synthase [Source:NCBI gene;Acc:418602]
12. MSMO1 ENSGALG00000009560 6928 0.874 - - - - - - 0.874 - - - methylsterol monooxygenase 1 [Source:NCBI gene;Acc:422423]
13. CZH9ORF80 CZH9ORF80 12760 0.869 - - - - - - - 0.869 - -
14. ESD ENSGALG00000016991 11289 0.854 - - - - - - - 0.854 - - esterase D [Source:NCBI gene;Acc:418856]
15. UBE2V1 ENSGALG00000008015 17947 0.849 - - - - - - 0.849 - - - ubiquitin conjugating enzyme E2 V1 [Source:NCBI gene;Acc:100538349]
16. PPIG ENSGALG00000009839 24114 0.842 - - - - - - - 0.842 - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
17. ABHD12 ENSGALG00000008525 5763 0.836 - - - - - - 0.836 - - - abhydrolase domain containing 12 [Source:NCBI gene;Acc:421249]
18. CNOT10 ENSGALG00000011494 2614 0.836 - - - - - - - 0.836 - - CCR4-NOT transcription complex subunit 10 [Source:NCBI gene;Acc:420669]
19. VBP1 VBP1 14482 0.832 - - - - - - - 0.832 - -
20. TMED7 ENSGALG00000028484 21008 0.832 - - - - - - - 0.832 - - Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
21. C9orf91 C9orf91 629 0.83 - - - - - 0.830 - - - -
22. gga-mir-1772 ENSGALG00000025300 2892 0.826 - - - - - - 0.826 - - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
23. SMARCB1 ENSGALG00000005983 20548 0.825 - - - - - - - 0.825 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:NCBI gene;Acc:769489]
24. PCDH12 ENSGALG00000002544 36 0.825 - - - - - 0.825 - - - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
25. EVA1CL ENSGALG00000004734 168 0.824 - - - - - 0.824 - - - - protein eva-1 homolog C-like, transcript variant X2
26. SOS1 ENSGALG00000039450 3941 0.823 - - - - - - 0.823 - - - SOS Ras/Rac guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:11187]
27. KIAA1919 KIAA1919 58 0.822 - - - - - 0.822 - - - -
28. GTF2A2 ENSGALG00000003793 5957 0.821 - - - - - - 0.821 - - - general transcription factor IIA subunit 2 [Source:NCBI gene;Acc:770910]
29. METTL14 ENSGALG00000012000 5876 0.82 - - - - - - 0.820 - - - methyltransferase like 14 [Source:NCBI gene;Acc:422684]
30. ZNF346 ENSGALG00000001144 96 0.817 - - - - - 0.817 - - - - zinc finger protein 346 [Source:HGNC Symbol;Acc:HGNC:16403]
31. C16orf72 ENSGALG00000007291 228 0.817 - - - - - 0.817 - - - - chromosome 16 open reading frame 72 [Source:HGNC Symbol;Acc:HGNC:30103]
32. CHMP3 ENSGALG00000015805 11581 0.815 - - - - - - 0.815 - - - charged multivesicular body protein 3
33. PALB2 ENSGALG00000006078 1549 0.815 - - - - - 0.815 - - - - partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:HGNC:26144]
34. CHTF8 ENSGALG00000000632 7230 0.815 - - - - - - 0.815 - - - chromosome transmission fidelity factor 8 [Source:NCBI gene;Acc:769609]
35. RGS7BP ENSGALG00000027389 1414 0.813 - - - - - - 0.813 - - - regulator of G protein signaling 7 binding protein [Source:HGNC Symbol;Acc:HGNC:23271]
36. TOR1A ENSGALG00000004165 4487 0.812 - - - - - - 0.812 - - - torsin family 1 member A [Source:NCBI gene;Acc:417190]
37. SMDT1 ENSGALG00000011897 9360 0.812 - - - - - - 0.812 - - - single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
38. AGO1 ENSGALG00000002249 125 0.811 - - - - - 0.811 - - - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
39. LY96 ENSGALG00000032701 18 0.811 - - - - - 0.811 - - - - lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
40. PVALB1 PVALB1 267 0.811 - - - - - 0.811 - - - -
41. DPP10 ENSGALG00000012156 20 0.811 - - - - - 0.811 - - - - dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
42. ATP6V1AL ENSGALG00000000048 21 0.811 - - - - - 0.811 - - - - ATPase H+ transporting V1 subunit A-like, transcript variant X2
43. ALDH6A1 ENSGALG00000010211 29 0.811 - - - - - 0.811 - - - - aldehyde dehydrogenase 6 family member A1 [Source:HGNC Symbol;Acc:HGNC:7179]
44. DNAH12 ENSGALG00000005601 80 0.811 - - - - - 0.811 - - - - dynein, axonemal, heavy chain 12, transcript variant X6
45. TRAPPC6B ENSGALG00000010157 7567 0.811 - - - - - - 0.811 - - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
46. ENSGALG00000023485 ENSGALG00000023485 46 0.811 - - - - - 0.811 - - - -
47. PPM1L ENSGALG00000009537 5 0.811 - - - - - 0.811 - - - - protein phosphatase, Mg2+/Mn2+ dependent 1L [Source:HGNC Symbol;Acc:HGNC:16381]
48. FAM208B 24 0.811 - - - - - 0.811 - - - - family with sequence similarity 208 member B, transcript variant X3
49. PPIP5K1 ENSGALG00000008385 7 0.811 - - - - - 0.811 - - - - diphosphoinositol pentakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:29023]
50. KIAA1239 KIAA1239 263 0.809 - - - - - 0.809 - - - -
51. TK2 ENSGALG00000034216 5394 0.809 - - - - - - 0.809 - - - thymidine kinase 2, mitochondrial [Source:NCBI gene;Acc:427551]
52. CASR ENSGALG00000038405 53 0.809 - - - - - 0.809 - - - - calcium sensing receptor [Source:HGNC Symbol;Acc:HGNC:1514]
53. TAF2 ENSGALG00000043193 6311 0.806 - - - - - - 0.806 - - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
54. SLC25A26 ENSGALG00000007467 255 0.806 - - - - - 0.806 - - - - solute carrier family 25 member 26 [Source:NCBI gene;Acc:416084]
55. KBP ENSGALG00000001172 3444 0.803 - - - - - - 0.803 - - - kainate binding protein [Source:NCBI gene;Acc:396300]
56. GTF2B ENSGALG00000006205 6950 0.803 - - - - - - 0.803 - - - general transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]
57. MMS22L ENSGALG00000015513 2089 0.8 - - - - - - 0.800 - - - MMS22 like, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:21475]
58. ENSGALG00000025953 ENSGALG00000025953 65 0.8 - - - - - 0.800 - - - -
59. ARID2 ENSGALG00000033074 3461 0.799 - - - - - - 0.799 - - - AT-rich interaction domain 2 [Source:HGNC Symbol;Acc:HGNC:18037]
60. MICALL1 ENSGALG00000012265 3753 0.799 - - - - - - 0.799 - - - MICAL like 1 [Source:NCBI gene;Acc:418032]
61. N4BP2 ENSGALG00000014281 3144 0.798 - - - - - - - 0.798 - - NEDD4 binding protein 2, transcript variant X6
62. MCF2L2 ENSGALG00000008744 8 0.798 - - - - - 0.798 - - - - MCF.2 cell line derived transforming sequence-like 2 [Source:HGNC Symbol;Acc:HGNC:30319]
63. EIF4ENIF1 ENSGALG00000006898 24 0.798 - - - - - 0.798 - - - - eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:HGNC Symbol;Acc:HGNC:16687]
64. EXOSC9 ENSGALG00000011884 3403 0.797 - - - - - - 0.797 - - - exosome component 9 [Source:NCBI gene;Acc:619530]
65. ENSGALG00000006296 ENSGALG00000006296 625 0.797 - - - - - 0.797 - - - -
66. ENSGALG00000014946 ENSGALG00000014946 40 0.795 - - - - - 0.795 - - - -
67. DRG1 ENSGALG00000006921 10791 0.795 - - - - - - 0.795 - - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
68. HNRNPD ENSGALG00000011184 10686 0.794 - - - - - - 0.794 - - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
69. KIF2C ENSGALG00000010120 8999 0.793 - - - - - - 0.793 - - - kinesin family member 2C, transcript variant X1
70. TMEM126A ENSGALG00000014066 6149 0.792 - - - - - - 0.792 - - - transmembrane protein 126A [Source:HGNC Symbol;Acc:HGNC:25382]
71. FANCL ENSGALG00000030022 7423 0.791 - - - - - - 0.791 - - - FA complementation group L [Source:NCBI gene;Acc:421202]
72. CUL3 ENSGALG00000005108 9571 0.789 - - - - - - 0.789 - - - cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
73. SLMO1 SLMO1 4357 0.789 - - - - - - 0.789 - - -
74. NKRF ENSGALG00000008645 3531 0.788 - - - - - - 0.788 - - - NFKB repressing factor [Source:NCBI gene;Acc:422370]
75. WDR3 ENSGALG00000014791 5856 0.788 - - - - - - 0.788 - - - WD repeat domain 3 [Source:NCBI gene;Acc:427952]
76. C3AR1 ENSGALG00000013218 32 0.788 - - - - - 0.788 - - - - complement C3a receptor 1 [Source:NCBI gene;Acc:418198]
77. EGLN1 ENSGALG00000041422 11032 0.788 - - - - - - 0.788 - - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
78. DGCR6 ENSGALG00000027369 7882 0.787 - - - - - - 0.787 - - - DiGeorge syndrome critical region gene 6 [Source:NCBI gene;Acc:395907]
79. DHDDS ENSGALG00000029909 2229 0.785 - - - - - - 0.785 - - - dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:20603]
80. uc_6 uc_6 14 0.785 - - - - - 0.785 - - - -
81. LRRC58 ENSGALG00000033186 15 0.785 - - - - - 0.785 - - - - leucine rich repeat containing 58 [Source:HGNC Symbol;Acc:HGNC:26968]
82. SPDL1 ENSGALG00000001942 4403 0.785 - - - - - - 0.785 - - - spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
83. N6AMT2 N6AMT2 4703 0.784 - - - - - 0.784 - - - -
84. TTPAL ENSGALG00000004244 2734 0.782 - - - - - - 0.782 - - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
85. RHOV ENSGALG00000028047 75 0.782 - - - - - 0.782 - - - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
86. RYR3 ENSGALG00000009705 30 0.781 - - - - - 0.781 - - - - ryanodine receptor 3 [Source:NCBI gene;Acc:396111]
87. C2H6orf52 ENSGALG00000012721 3631 0.78 - - - - - - 0.780 - - - chromosome 2 C6orf52 homolog [Source:NCBI gene;Acc:420849]
88. DHRS3 ENSGALG00000030376 6422 0.78 - - - - - - 0.780 - - - dehydrogenase/reductase 3 [Source:NCBI gene;Acc:419480]
89. INTS2 ENSGALG00000005269 6966 0.779 - - - - - 0.779 - - - - integrator complex subunit 2 [Source:NCBI gene;Acc:417640]
90. DMTF1 ENSGALG00000030844 3584 0.779 - - - - - - 0.779 - - - cyclin D binding myb like transcription factor 1 [Source:NCBI gene;Acc:418646]
91. CACNA1S 63 0.778 - - - - - 0.778 - - - - calcium voltage-gated channel subunit alpha1 S, transcript variant X4
92. SHC1 ENSGALG00000039775 219 0.778 - - - - - 0.778 - - - - SHC adaptor protein 1 [Source:NCBI gene;Acc:395934]
93. PPP2CA_1 ENSGALG00000006462 3170 0.777 - - - - - 0.777 - - - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
94. TBL1XR1 ENSGALG00000039182 16983 0.776 - - - - - - 0.776 - - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
95. SLC30A5 ENSGALG00000014787 5573 0.776 - - - - - - 0.776 - - - solute carrier family 30 member 5 [Source:NCBI gene;Acc:427173]
96. CENPW ENSGALG00000027454 7517 0.776 - - - - - - 0.776 - - - centromere protein W [Source:NCBI gene;Acc:421716]
97. LINS LINS 18 0.774 - - - - - 0.774 - - - -
98. SALL4 ENSGALG00000041365 6760 0.774 - - - - - - 0.774 - - - spalt like transcription factor 4 [Source:NCBI gene;Acc:769286]
99. SENP6 ENSGALG00000015901 8013 0.773 - - - - - - 0.773 - - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
100. MRPL53 ENSGALG00000037867 6100 0.773 - - - - - - 0.773 - - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]

There are 228 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA