Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SRF

Gene Name Gene ID Reads Annotation
SRF ENSGALG00000032029 6983 serum response factor [Source:NCBI gene;Acc:396103]











Genes with expression patterns similar to SRF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SRF ENSGALG00000032029 6983 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serum response factor [Source:NCBI gene;Acc:396103]
2. PTX3 ENSGALG00000028284 2984 1.637 - - - - - - - 0.820 - 0.817 pentraxin 3 [Source:NCBI gene;Acc:548626]
3. CCNK ENSGALG00000011138 6416 1.602 - - - - - - - 0.799 - 0.803 cyclin K [Source:NCBI gene;Acc:423446]
4. NEO1 ENSGALG00000001774 10165 1.576 - - - - - - 0.788 - - 0.788 neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
5. IGBP1 ENSGALG00000044628 9200 1.573 - - - - - - 0.769 0.804 - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
6. DHODH ENSGALG00000000802 3226 1.57 - - - - - - 0.784 0.786 - - dihydroorotate dehydrogenase (quinone) [Source:NCBI gene;Acc:415876]
7. CPT2 ENSGALG00000010681 3211 1.57 - - - - - - - 0.793 - 0.777 carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
8. MAN2A1 ENSGALG00000000255 4543 1.557 - - - - - - 0.712 - - 0.845 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
9. FNBP1L ENSGALG00000005850 9219 1.553 - - - - - - 0.798 - - 0.755 formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
10. POLR1B ENSGALG00000032273 3845 1.55 - - - - - - - 0.725 - 0.825 RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
11. ODF2 ENSGALG00000004767 3972 1.549 - - - - - - 0.824 - - 0.725 outer dense fiber of sperm tails 2 [Source:NCBI gene;Acc:417213]
12. MTMR8 ENSGALG00000007590 6022 1.546 - - - - - - 0.779 0.767 - - myotubularin related protein 8 [Source:NCBI gene;Acc:422312]
13. CLIC4 ENSGALG00000001262 11497 1.543 - - - - - - 0.761 - - 0.782 chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
14. PCNP ENSGALG00000015330 15750 1.536 - - - - - - 0.718 - - 0.818 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
15. DOCK1 ENSGALG00000042259 5438 1.533 - - 0.788 - - - - - - 0.745 dedicator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:2987]
16. BRT-1 BRT-1 26083 1.533 - - - - - - - 0.813 - 0.720
17. AIP ENSGALG00000040247 4166 1.531 - - - - - - - 0.798 0.733 - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
18. SMC4 ENSGALG00000009553 15715 1.53 - - - - - - 0.778 - - 0.752 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
19. WASF1 ENSGALG00000015066 5628 1.516 - - - - - - 0.766 - - 0.750 WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
20. RAB5C ENSGALG00000003359 5597 1.514 - - - - - - 0.701 - - 0.813 RAB5C, member RAS oncogene family [Source:NCBI gene;Acc:395197]
21. MRPL50 ENSGALG00000015543 11649 1.499 - - - - - - 0.726 - - 0.773 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
22. RER1 ENSGALG00000021683 9074 1.499 - - - - - - - 0.759 - 0.740 retention in endoplasmic reticulum sorting receptor 1 [Source:NCBI gene;Acc:419397]
23. TMEM115 ENSGALG00000026965 13050 1.497 - - - - - - 0.733 - - 0.764 transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]
24. TANK ENSGALG00000011131 3382 1.496 - - - - - - - 0.711 - 0.785 TRAF family member associated NFKB activator [Source:NCBI gene;Acc:424190]
25. COL5A2 ENSGALG00000031112 18358 1.491 - - - - - - - 0.722 - 0.769 collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
26. ATP6V0A2 ENSGALG00000003194 4824 1.49 - - - - - - - 0.780 0.710 - ATPase H+ transporting V0 subunit a2 [Source:NCBI gene;Acc:395473]
27. UBE2H ENSGALG00000031975 12964 1.488 - - - - - - 0.713 0.775 - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
28. GPALPP1 ENSGALG00000031567 4221 1.485 - - - - - - 0.753 0.732 - - GPALPP motifs containing 1 [Source:NCBI gene;Acc:418842]
29. CIB1 ENSGALG00000008302 13946 1.485 - - - - - - 0.724 - - 0.761 calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
30. HSPA4 ENSGALG00000040882 20966 1.467 - - - - - - 0.762 - - 0.705 heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
31. CAMSAP1 ENSGALG00000001692 2617 1.464 - - - - - - 0.727 0.737 - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
32. PEX2 ENSGALG00000035752 4427 1.461 - - 0.736 - - - - - - 0.725 peroxisomal biogenesis factor 2 [Source:NCBI gene;Acc:420192]
33. GNG12 ENSGALG00000026591 5817 1.458 - - - - - - - 0.746 0.712 - G protein subunit gamma 12, transcript variant X21
34. TOR1AIP1 ENSGALG00000029238 5843 1.458 - - - - - - 0.726 0.732 - - torsin 1A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29456]
35. ECI2 ENSGALG00000012809 3692 1.455 - - - - - - 0.750 - - 0.705 enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:HGNC:14601]
36. ACSS2 ENSGALG00000003362 3023 1.454 - - - - - - 0.735 0.719 - - acyl-CoA synthetase short chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
37. TMED7 ENSGALG00000028484 21008 1.444 - - - - - - 0.713 - - 0.731 Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
38. UAP1 ENSGALG00000002725 3016 1.443 - - - - - - 0.723 - 0.720 - UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12457]
39. UPF2 ENSGALG00000033772 9548 1.438 - - - - - - 0.734 - - 0.704 UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]
40. RNASEH1 ENSGALG00000016389 2694 1.432 - - - - - - - 0.728 0.704 - ribonuclease H1 [Source:NCBI gene;Acc:395848]
41. BET1L ENSGALG00000004172 5305 1.426 - - - - - - 0.717 0.709 - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
42. MANF ENSGALG00000002362 7518 1.422 - - - - - - - - 0.713 0.709 mesencephalic astrocyte derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:15461]
43. MPI ENSGALG00000029296 11781 0.886 - - - - - - 0.886 - - - mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
44. C1H21ORF91 ENSGALG00000028290 5550 0.871 - - - - - - - - - 0.871 chromosome 1 open reading frame, human C21orf91 [Source:NCBI gene;Acc:395489]
45. RNH1 ENSGALG00000006904 14542 0.87 - - - - - - - 0.870 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
46. CABLES1 ENSGALG00000014998 1636 0.856 - - - - - - - - - 0.856 Cdk5 and Abl enzyme substrate 1 [Source:HGNC Symbol;Acc:HGNC:25097]
47. SEC63 ENSGALG00000015308 11596 0.856 - - - - - - - 0.856 - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
48. GPR162 ENSGALG00000022926 7181 0.855 - - - - - - - - - 0.855 G protein-coupled receptor 162 [Source:HGNC Symbol;Acc:HGNC:16693]
49. ERI1 ENSGALG00000011448 3236 0.851 - - - - - - - - - 0.851 exoribonuclease 1 [Source:NCBI gene;Acc:422629]
50. TFB2M ENSGALG00000010651 4374 0.845 - - - - - - 0.845 - - - transcription factor B2, mitochondrial
51. UTP3 ENSGALG00000011553 8814 0.845 - - - - - - - 0.845 - - UTP3, small subunit processome component homolog (S. cerevisiae)
52. DPYSL3 ENSGALG00000007582 7743 0.845 - - - - - - - 0.845 - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
53. PPA2 ENSGALG00000010582 22301 0.845 - - - - - - - - - 0.845 pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]
54. NUBP1 ENSGALG00000007241 3791 0.844 - - - - - - - - - 0.844 nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
55. COG5 ENSGALG00000042764 4205 0.844 - - - - - - - - - 0.844 component of oligomeric golgi complex 5 [Source:NCBI gene;Acc:417704]
56. MYOCD ENSGALG00000001021 351 0.844 - - - - - - - - - 0.844 myocardin [Source:NCBI gene;Acc:427790]
57. ERCC6 ENSGALG00000006254 3452 0.844 - - - - - - - - - 0.844 ERCC excision repair 6, chromatin remodeling factor [Source:HGNC Symbol;Acc:HGNC:3438]
58. ODZ3 ODZ3 2213 0.843 - - - - - - - - - 0.843
59. PRR14L ENSGALG00000028473 439 0.841 - - - - - - - - - 0.841 proline rich 14-like, transcript variant X5
60. KDR ENSGALG00000013907 869 0.84 - - - - - - - - - 0.840 kinase insert domain receptor [Source:NCBI gene;Acc:395323]
61. TCOF1 ENSGALG00000005535 24554 0.839 - - - - - - - - - 0.839 treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
62. SVIL ENSGALG00000007331 12032 0.837 - - - - - - - - - 0.837 supervillin [Source:HGNC Symbol;Acc:HGNC:11480]
63. GTF3C1 ENSGALG00000007387 5788 0.836 - - - - - - - - - 0.836 general transcription factor IIIC subunit 1 [Source:HGNC Symbol;Acc:HGNC:4664]
64. LAMP2 ENSGALG00000008572 198 0.836 - - - - - - - - - 0.836 lysosomal associated membrane protein 2 [Source:NCBI gene;Acc:414800]
65. UPF1 ENSGALG00000003220 9496 0.833 - - - - - - - 0.833 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
66. MTSS1 ENSGALG00000041969 1312 0.832 - - - - - - - - - 0.832 MTSS1, I-BAR domain containing [Source:NCBI gene;Acc:420336]
67. MPP5 ENSGALG00000009581 724 0.832 - - - - - - - - - 0.832 membrane palmitoylated protein 5 [Source:NCBI gene;Acc:423281]
68. SNRNP48 ENSGALG00000013005 1468 0.831 - - - - - - - - - 0.831 small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
69. AGGF1 ENSGALG00000004311 3011 0.83 - - - - - - - - - 0.830 angiogenic factor with G-patch and FHA domains 1, transcript variant X1
70. SLC39A9 ENSGALG00000009438 4838 0.829 - - - - - - - 0.829 - - solute carrier family 39 member 9 [Source:NCBI gene;Acc:423261]
71. NPNT ENSGALG00000043555 3002 0.829 - - - - - - - 0.829 - - nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
72. TIAR TIAR 2471 0.829 - - - - - - - - - 0.829
73. ETFDH ENSGALG00000009442 7671 0.829 - - - - - - - - - 0.829 electron transfer flavoprotein dehydrogenase [Source:NCBI gene;Acc:428724]
74. ZNF395 ENSGALG00000034140 1868 0.829 - - - - - - - - - 0.829 zinc finger protein 395 [Source:HGNC Symbol;Acc:HGNC:18737]
75. MIER1 ENSGALG00000011118 1418 0.828 - - - - - - - - - 0.828 MIER1 transcriptional regulator [Source:NCBI gene;Acc:424702]
76. SLC25A28 ENSGALG00000007479 4902 0.828 - - - - - - - - 0.828 - solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]
77. ZC3H11A ENSGALG00000000541 2712 0.827 - - - - - - - - - 0.827 zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
78. PPFIA1 ENSGALG00000035774 5258 0.827 - - - - - - - - - 0.827 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
79. PGD ENSGALG00000002797 15115 0.826 - - - - - - - - - 0.826 phosphogluconate dehydrogenase [Source:NCBI gene;Acc:419450]
80. BDP1 BDP1 3073 0.826 - - - - - - - - - 0.826
81. SDHD ENSGALG00000007878 25129 0.825 - - - - - - 0.825 - - - succinate dehydrogenase complex subunit D [Source:NCBI gene;Acc:419793]
82. ZBED4 ENSGALG00000032659 5313 0.824 - - - - - - - - - 0.824 zinc finger BED-type containing 4 [Source:NCBI gene;Acc:417734]
83. CCDC12 ENSGALG00000005487 8190 0.824 - - - - - - 0.824 - - - coiled-coil domain containing 12 [Source:NCBI gene;Acc:420402]
84. KCNMA1 ENSGALG00000004980 261 0.822 - - - - - - - - - 0.822 potassium calcium-activated channel subfamily M alpha 1 [Source:NCBI gene;Acc:374065]
85. ANXA6 ENSGALG00000004357 2891 0.821 - - - - - - - - - 0.821 annexin A6 [Source:NCBI gene;Acc:395481]
86. UBN1 ENSGALG00000031416 2848 0.821 - - - - - - - - - 0.821 ubinuclein 1 [Source:NCBI gene;Acc:416398]
87. ZFR ENSGALG00000003235 8466 0.821 - - - - - - - - - 0.821 zinc finger RNA binding protein, transcript variant X3
88. ARHGAP21 ENSGALG00000007721 3961 0.821 - - - - - - - - - 0.821 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
89. HDHD1 HDHD1 2928 0.82 - - - - - - - - - 0.820
90. MB21D1 2460 0.819 - - - - - - - - - 0.819 Mab-21 domain containing 1
91. PIGT ENSGALG00000003909 3804 0.819 - - - - - - - - - 0.819 phosphatidylinositol glycan anchor biosynthesis class T [Source:HGNC Symbol;Acc:HGNC:14938]
92. DIAPH3 ENSGALG00000016937 1069 0.818 - - - - - - - - - 0.818 diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
93. COMMD7 ENSGALG00000006630 11491 0.818 - - - - - - - - - 0.818 COMM domain containing 7 [Source:NCBI gene;Acc:419286]
94. ITGA9 ENSGALG00000029378 415 0.817 - - - - - - - - - 0.817 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
95. KMT2C 6306 0.817 - - - - - - - - - 0.817 lysine methyltransferase 2C, transcript variant X14
96. MED24 ENSGALG00000013506 5403 0.817 - - - - - - - - - 0.817 mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
97. gga-mir-7476 gga-mir-7476 20209 0.817 - - - - - - - - - 0.817
98. ARPC1B ENSGALG00000032588 2407 0.817 - - - - - - - - - 0.817 actin related protein 2/3 complex subunit 1B [Source:NCBI gene;Acc:416490]
99. C3H6ORF72 C3H6ORF72 1471 0.816 - - - - - - - - - 0.816
100. CLMP ENSGALG00000006507 8079 0.816 - - - - - - - 0.816 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]

There are 660 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA