Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOX9

Gene Name Gene ID Reads Annotation
SOX9 ENSGALG00000004386 14802 SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]











Genes with expression patterns similar to SOX9

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SOX9 ENSGALG00000004386 14802 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
2. LECT1 LECT1 12694 4.254 - - 0.879 0.844 0.927 - 0.784 - 0.820 -
3. EMILIN3 ENSGALG00000030012 6200 4.012 - - 0.902 0.792 0.789 - 0.792 - 0.737 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
4. COL9A2 ENSGALG00000027526 4685 3.949 - - 0.881 0.745 0.863 - 0.705 - 0.755 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
5. COL9A3 ENSGALG00000005628 2842 3.907 - - 0.854 0.713 0.794 - 0.760 - 0.786 - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
6. SHH ENSGALG00000006379 1943 3.15 - - 0.860 0.706 - - 0.761 - 0.823 - sonic hedgehog [Source:NCBI gene;Acc:395615]
7. PAX1 ENSGALG00000039040 3339 2.707 - - 0.878 0.922 0.907 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
8. C1QTNF3 ENSGALG00000027887 8646 2.518 - - 0.806 0.854 0.858 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
9. EN1 ENSGALG00000042389 3051 2.501 - - 0.868 0.759 0.874 - - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
10. COL8A1 ENSGALG00000015253 2505 2.367 - - 0.867 - 0.720 - 0.780 - - - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
11. ENSGALG00000010113 ENSGALG00000010113 508 2.346 - - 0.879 - - - 0.733 - 0.734 -
12. CPZ ENSGALG00000030209 8822 2.327 - - 0.792 0.832 - - 0.703 - - - carboxypeptidase Z [Source:NCBI gene;Acc:395266]
13. SPON1 ENSGALG00000038775 16503 2.284 - - 0.736 - 0.709 - 0.839 - - - spondin 1 [Source:NCBI gene;Acc:395657]
14. TNNC2 ENSGALG00000006835 2963 2.25 - - 0.705 - 0.726 - - - 0.819 - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
15. ACTC1 ENSGALG00000009844 20914 2.219 - - - 0.797 0.714 - - - 0.708 - actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
16. MYL2_1 ENSGALG00000004582 2367 2.188 - - 0.710 - 0.752 - - - 0.726 - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
17. PKD2L2 ENSGALG00000006120 592 1.7 - - - 0.866 0.834 - - - - - polycystin 2 like 2, transient receptor potential cation channel [Source:HGNC Symbol;Acc:HGNC:9012]
18. CYP1B1 ENSGALG00000025822 3143 1.668 - - 0.877 - - - - - 0.791 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
19. TIMP3 ENSGALG00000028627 8706 1.646 - - 0.816 - - - 0.830 - - - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
20. CRIP1 ENSGALG00000002771 4270 1.599 - - 0.851 0.748 - - - - - - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
21. SMOC1 ENSGALG00000009415 2403 1.585 - - 0.829 - - - - - 0.756 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
22. COL9A1 ENSGALG00000015970 3788 1.578 - - 0.825 - - - 0.753 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
23. WWP2 ENSGALG00000000699 5040 1.552 - - 0.801 - - - - - 0.751 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
24. ACAN ENSGALG00000006725 184 1.545 - - 0.801 - - - - - 0.744 - aggrecan [Source:NCBI gene;Acc:395798]
25. gga-mir-7474 ENSGALG00000033766 5727 1.539 - - - 0.831 0.708 - - - - - gga-mir-7474 [Source:miRBase;Acc:MI0024147]
26. T ENSGALG00000011489 2619 1.533 - - 0.813 - - - 0.720 - - - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
27. C9H2ORF82 ENSGALG00000040264 4201 1.528 - - 0.808 - 0.720 - - - - - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
28. ZNF385B ENSGALG00000009012 290 1.524 - - 0.792 - - - 0.732 - - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
29. MYL1 ENSGALG00000002907 1300 1.52 - - 0.754 0.766 - - - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
30. ACBD7 ENSGALG00000019663 2328 1.499 - - 0.771 - 0.728 - - - - - acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
31. MYL3 ENSGALG00000005448 3379 1.485 - - 0.730 - - - - - 0.755 - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
32. TMEM182 ENSGALG00000038936 274 1.482 - - 0.764 0.718 - - - - - - transmembrane protein 182 [Source:HGNC Symbol;Acc:HGNC:26391]
33. SST ENSGALG00000007361 1383 1.473 - - 0.751 - 0.722 - - - - - somatostatin [Source:NCBI gene;Acc:396279]
34. EFEMP1 ENSGALG00000037901 704 1.461 - - 0.711 0.750 - - - - - - EGF containing fibulin extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3218]
35. PMP22 ENSGALG00000031425 5358 1.455 - - 0.731 - - - - - 0.724 - peripheral myelin protein 22 [Source:NCBI gene;Acc:417327]
36. PAX-9 PAX-9 491 1.426 - - 0.712 0.714 - - - - - -
37. XIRP1 ENSGALG00000006025 729 1.42 - - - 0.707 0.713 - - - - - xin actin binding repeat containing 1 [Source:NCBI gene;Acc:374266]
38. IFT81 ENSGALG00000003854 2534 0.995 - - - - - - - 0.995 - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
39. WDR92 ENSGALG00000008760 3934 0.995 - - - - - - - 0.995 - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
40. BCL2L1 ENSGALG00000006211 2490 0.995 - - - - - - - 0.995 - - BCL2 like 1 [Source:NCBI gene;Acc:373954]
41. CHEK2 ENSGALG00000005695 1558 0.994 - - - - - - - 0.994 - - checkpoint kinase 2 [Source:NCBI gene;Acc:768913]
42. FPGS ENSGALG00000042460 1749 0.994 - - - - - - - 0.994 - - folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
43. ATOX1 ENSGALG00000004176 16486 0.994 - - - - - - - 0.994 - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
44. MED1 ENSGALG00000001708 9556 0.994 - - - - - - - 0.994 - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
45. UQCC UQCC 5913 0.993 - - - - - - - 0.993 - -
46. TBC1D1 ENSGALG00000039380 4423 0.993 - - - - - - - 0.993 - - TBC1 domain family member 1 [Source:NCBI gene;Acc:426162]
47. PDS5B ENSGALG00000017070 3998 0.993 - - - - - - - 0.993 - - PDS5 cohesin associated factor B [Source:NCBI gene;Acc:418910]
48. XPOT ENSGALG00000009835 2953 0.993 - - - - - - - 0.993 - - exportin for tRNA [Source:NCBI gene;Acc:417824]
49. ELP3 ENSGALG00000016624 4483 0.993 - - - - - - - 0.993 - - elongator acetyltransferase complex subunit 3 [Source:NCBI gene;Acc:422021]
50. PIK3C2B ENSGALG00000037043 4522 0.993 - - - - - - - 0.993 - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
51. HEXA ENSGALG00000043828 4789 0.993 - - - - - - - 0.993 - - hexosaminidase subunit alpha [Source:NCBI gene;Acc:415320]
52. DCTN6 ENSGALG00000010298 7507 0.993 - - - - - - - 0.993 - - dynactin subunit 6 [Source:NCBI gene;Acc:771257]
53. C12orf45 C12orf45 2445 0.993 - - - - - - - 0.993 - -
54. VPS39 ENSGALG00000008991 4018 0.993 - - - - - - - 0.993 - - VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
55. C20ORF7 C20ORF7 2383 0.993 - - - - - - - 0.993 - -
56. GTF2H1 ENSGALG00000042340 1553 0.992 - - - - - - - 0.992 - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
57. ANKRD49 ENSGALG00000017210 3247 0.992 - - - - - - - 0.992 - - ankyrin repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:25970]
58. NEK1 ENSGALG00000009683 4305 0.992 - - - - - - - 0.992 - - NIMA related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
59. PDIA3 ENSGALG00000008348 4982 0.992 - - - - - - - 0.992 - - protein disulfide isomerase family A member 3 [Source:NCBI gene;Acc:373899]
60. PES1 ENSGALG00000007778 12248 0.992 - - - - - - - 0.992 - - pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
61. FAM69B ENSGALG00000002437 1253 0.992 - - - - - - - 0.992 - - family with sequence similarity 69 member B [Source:HGNC Symbol;Acc:HGNC:28290]
62. FZD6 ENSGALG00000030626 3336 0.992 - - - - - - - 0.992 - - frizzled class receptor 6 [Source:NCBI gene;Acc:378788]
63. EIF1AY ENSGALG00000016410 6431 0.992 - - - - - - - 0.992 - - eukaryotic translation initiation factor 1A, Y-linked [Source:NCBI gene;Acc:418606]
64. EMC7 ENSGALG00000009637 4969 0.992 - - - - - - - 0.992 - - ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
65. ADAMTSL1 1479 0.991 - - - - - - - 0.991 - - ADAMTS like 1, transcript variant X3
66. ARPC5L ENSGALG00000001014 5642 0.991 - - - - - - - 0.991 - - actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
67. SDHA ENSGALG00000013167 6509 0.991 - - - - - - - 0.991 - - succinate dehydrogenase complex flavoprotein subunit A [Source:NCBI gene;Acc:395758]
68. ERAL1 ENSGALG00000003995 1114 0.991 - - - - - - - 0.991 - - Era like 12S mitochondrial rRNA chaperone 1 [Source:NCBI gene;Acc:374084]
69. STXBP3 ENSGALG00000002001 1740 0.991 - - - - - - - 0.991 - - syntaxin binding protein 3 [Source:NCBI gene;Acc:424341]
70. EFNB1 ENSGALG00000036539 2706 0.991 - - - - - - - 0.991 - - ephrin B1 [Source:NCBI gene;Acc:395896]
71. PDE4B ENSGALG00000011094 1871 0.991 - - - - - - - 0.991 - - phosphodiesterase 4B [Source:NCBI gene;Acc:424700]
72. MAP9 ENSGALG00000020253 785 0.991 - - - - - - - 0.991 - - microtubule associated protein 9, transcript variant X7
73. DUSP3 ENSGALG00000035369 1790 0.991 - - - - - - - 0.991 - - dual specificity phosphatase 3
74. ERICH1 ENSGALG00000031021 1495 0.991 - - - - - - - 0.991 - - glutamate rich 1 [Source:NCBI gene;Acc:421904]
75. ANKS1B ENSGALG00000011549 440 0.99 - - - - - - - 0.990 - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:NCBI gene;Acc:417927]
76. ZEB1 ENSGALG00000007260 9277 0.99 - - - - - - - 0.990 - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
77. CRADD ENSGALG00000011297 1653 0.99 - - - - - - - 0.990 - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:NCBI gene;Acc:417900]
78. C4orf46 ENSGALG00000009432 3255 0.989 - - - - - - - 0.989 - - chromosome 4 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:27320]
79. UBE2B ENSGALG00000032664 6069 0.987 - - - - - - - 0.987 - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
80. FABP3 ENSGALG00000037050 873 0.983 - - - - - - - 0.983 - - fatty acid binding protein 3 [Source:NCBI gene;Acc:419557]
81. SURF6 ENSGALG00000038413 11178 0.982 - - - - - - - 0.982 - - surfeit 6 [Source:NCBI gene;Acc:417160]
82. CABIN1 ENSGALG00000006363 4415 0.98 - - - - - - - 0.980 - - calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
83. CMPK CMPK 9569 0.98 - - - - - - - 0.980 - -
84. DEK ENSGALG00000012684 14179 0.979 - - - - - - - 0.979 - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
85. TAB2 ENSGALG00000012356 3467 0.978 - - - - - - - 0.978 - - TGF-beta activated kinase 1 (MAP3K7) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17075]
86. POLR2H ENSGALG00000008534 21521 0.978 - - - - - - - 0.978 - - RNA polymerase II subunit H [Source:NCBI gene;Acc:424954]
87. LUC7L2 ENSGALG00000036238 11817 0.976 - - - - - - - 0.976 - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
88. PPP2R5D ENSGALG00000040005 6804 0.968 - - - - - - - 0.968 - - protein phosphatase 2 regulatory subunit B'delta [Source:HGNC Symbol;Acc:HGNC:9312]
89. DYNC1LI1 ENSGALG00000011491 11011 0.967 - - - - - - - 0.967 - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
90. ACTR3 ENSGALG00000012159 16020 0.965 - - - - - - - 0.965 - - ARP3 actin related protein 3 homolog [Source:NCBI gene;Acc:374197]
91. WDR61 ENSGALG00000003221 11352 0.963 - - - - - - - 0.963 - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
92. SUCLG1 ENSGALG00000015961 14323 0.961 - - - - - - - 0.961 - - succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
93. C28H19ORF10 C28H19ORF10 16529 0.951 - - - - - - - 0.951 - -
94. PUM2 ENSGALG00000016481 23625 0.945 - - - - - - - 0.945 - - pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
95. MIPEP ENSGALG00000017118 8666 0.939 - - - - - - - 0.939 - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
96. PDLIM1 ENSGALG00000005422 3385 0.938 - - - - - - - 0.938 - - PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
97. SHISA5 ENSGALG00000004661 8573 0.935 - - - - - - - 0.935 - - shisa family member 5 [Source:NCBI gene;Acc:415948]
98. ARHGAP18 ENSGALG00000031843 2117 0.935 - - - - - - - 0.935 - - Rho GTPase activating protein 18 [Source:HGNC Symbol;Acc:HGNC:21035]
99. PFDN2 ENSGALG00000026374 22020 0.935 - - - - - - - 0.935 - - prefoldin subunit 2 [Source:HGNC Symbol;Acc:HGNC:8867]
100. PCMTD2 ENSGALG00000005901 1833 0.934 - - - - - - - 0.934 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]

There are 106 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA