Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOX18

Gene Name Gene ID Reads Annotation
SOX18 ENSGALG00000034118 5453 SRY-box 18 [Source:NCBI gene;Acc:374200]











Genes with expression patterns similar to SOX18

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SOX18 ENSGALG00000034118 5453 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY-box 18 [Source:NCBI gene;Acc:374200]
2. GXYLT1 ENSGALG00000009532 5682 1.546 - - - - - - 0.804 0.742 - - glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
3. STRA6 ENSGALG00000001449 8248 1.46 - - - - - - 0.745 0.715 - - stimulated by retinoic acid 6 [Source:NCBI gene;Acc:415301]
4. STRN3 ENSGALG00000040464 9045 1.453 - - - - - - 0.727 0.726 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
5. COL5A2 ENSGALG00000031112 18358 0.837 - - - - - - 0.837 - - - collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
6. EHD3 ENSGALG00000009086 14407 0.836 - - - - - - 0.836 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
7. MVP ENSGALG00000040471 1407 0.816 - - - - - - - - - 0.816 major vault protein [Source:NCBI gene;Acc:420049]
8. LEPREL4 LEPREL4 5609 0.816 - - - - - - 0.816 - - -
9. PTK7 ENSGALG00000008609 8081 0.813 - - - - - - 0.813 - - - protein tyrosine kinase 7 (inactive) [Source:NCBI gene;Acc:421257]
10. RDH10 ENSGALG00000034346 15285 0.809 - - - - - - 0.809 - - - retinol dehydrogenase 10 [Source:NCBI gene;Acc:420183]
11. PPDPF ENSGALG00000005849 16711 0.807 - - - - - - 0.807 - - - pancreatic progenitor cell differentiation and proliferation factor [Source:NCBI gene;Acc:419245]
12. HMGCR ENSGALG00000014948 2514 0.805 - - - - - - - 0.805 - - 3-hydroxy-3-methylglutaryl-CoA reductase [Source:NCBI gene;Acc:395145]
13. PDE3B ENSGALG00000006035 3732 0.797 - - - - - - 0.797 - - - phosphodiesterase 3B [Source:NCBI gene;Acc:423064]
14. KAT6B ENSGALG00000005035 301 0.797 - - - - - - - - - 0.797 lysine acetyltransferase 6B [Source:HGNC Symbol;Acc:HGNC:17582]
15. WNT5A ENSGALG00000034168 10160 0.796 - - - - - - 0.796 - - - Wnt family member 5A [Source:NCBI gene;Acc:395703]
16. CDK2AP1 ENSGALG00000034919 5469 0.793 - - - - - - 0.793 - - - cyclin dependent kinase 2 associated protein 1 [Source:NCBI gene;Acc:416826]
17. UMPS ENSGALG00000011770 11331 0.791 - - - - - - 0.791 - - - uridine monophosphate synthetase [Source:NCBI gene;Acc:424256]
18. RELL1 ENSGALG00000014336 2950 0.791 - - - - - - 0.791 - - - RELT like 1 [Source:NCBI gene;Acc:422795]
19. MRPL24 ENSGALG00000030994 24264 0.788 - - - - - - 0.788 - - - mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037]
20. DNAJA4 ENSGALG00000036850 6847 0.788 - - - - - - 0.788 - - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
21. CCZ1 ENSGALG00000003458 4482 0.784 - - - - - - 0.784 - - - CCZ1 homolog, vacuolar protein trafficking and biogenesis associated [Source:NCBI gene;Acc:416433]
22. PXK ENSGALG00000007052 121 0.78 - - - - - - - - - 0.780 PX domain containing serine/threonine kinase like [Source:HGNC Symbol;Acc:HGNC:23326]
23. TM4SF18 4553 0.78 - - - - - - 0.780 - - - transmembrane 4 L six family member 18, transcript variant X2
24. EVL ENSGALG00000011209 5440 0.78 - - - - - - 0.780 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
25. EPFIP1L ENSGALG00000007683 18050 0.779 - - - - - - 0.779 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
26. ROR2 ENSGALG00000015208 1323 0.779 - - - - - - 0.779 - - - receptor tyrosine kinase like orphan receptor 2 [Source:NCBI gene;Acc:769516]
27. CEP44 ENSGALG00000020201 1060 0.779 - - - - - - - - - 0.779 centrosomal protein 44 [Source:HGNC Symbol;Acc:HGNC:29356]
28. FAM154B FAM154B 175 0.778 - - - - - - - - - 0.778
29. SNAI1 ENSGALG00000008018 3930 0.777 - - - - - - 0.777 - - - snail family transcriptional repressor 1 [Source:NCBI gene;Acc:396047]
30. TGFBI ENSGALG00000029429 2306 0.776 - - - - - - 0.776 - - - transforming growth factor beta induced [Source:NCBI gene;Acc:395897]
31. ENSGALG00000002541 ENSGALG00000002541 2948 0.776 - - - - - - 0.776 - - -
32. EGFL7 ENSGALG00000043499 6272 0.772 - - - - - - 0.772 - - - EGF like domain multiple 7 [Source:NCBI gene;Acc:417137]
33. TMEM200B ENSGALG00000024318 117 0.772 - - - - - - - - - 0.772 transmembrane protein 200B [Source:HGNC Symbol;Acc:HGNC:33785]
34. ITGB1 ENSGALG00000007145 19551 0.771 - - - - - - 0.771 - - - integrin subunit beta 1 [Source:NCBI gene;Acc:374058]
35. CD151 ENSGALG00000006856 5581 0.771 - - - - - - 0.771 - - - CD151 molecule (Raph blood group) [Source:NCBI gene;Acc:423105]
36. HAPLN1 ENSGALG00000015627 14942 0.77 - - - - - - 0.770 - - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
37. SF3B4 ENSGALG00000013352 2054 0.769 - - - - - - - 0.769 - - splicing factor 3b subunit 4 [Source:HGNC Symbol;Acc:HGNC:10771]
38. TPGS1 ENSGALG00000026780 688 0.768 - - - - - - - - - 0.768 tubulin polyglutamylase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:25058]
39. PSMG1 ENSGALG00000016062 7511 0.767 - - - - - - 0.767 - - - proteasome assembly chaperone 1 [Source:NCBI gene;Acc:418520]
40. CDH11 ENSGALG00000039985 18212 0.767 - - - - - - 0.767 - - - cadherin 11 [Source:NCBI gene;Acc:415797]
41. SSR3 ENSGALG00000028683 24334 0.766 - - - - - - 0.766 - - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
42. NR3C2 ENSGALG00000010035 603 0.765 - - - - - - - - - 0.765 nuclear receptor subfamily 3 group C member 2 [Source:NCBI gene;Acc:374131]
43. RGS2 ENSGALG00000042744 2075 0.765 - - - - - - - - - 0.765 regulator of G-protein signaling 2 [Source:NCBI gene;Acc:378912]
44. PTPRJ ENSGALG00000006382 891 0.764 - - - - - - - - - 0.764 protein tyrosine phosphatase, receptor type J [Source:NCBI gene;Acc:395330]
45. RGN ENSGALG00000016724 3184 0.763 - - - - - - 0.763 - - - regucalcin [Source:NCBI gene;Acc:395480]
46. LMAN1 ENSGALG00000034821 12788 0.762 - - - - - - 0.762 - - - lectin, mannose binding 1 [Source:NCBI gene;Acc:426849]
47. INADL INADL 51 0.762 - - - - - - - - - 0.762
48. VEGFC ENSGALG00000010847 2197 0.761 - - - - - - 0.761 - - - vascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]
49. ENSGALG00000017396 ENSGALG00000017396 9028 0.761 - - - - - - 0.761 - - -
50. RAB33B ENSGALG00000009790 2340 0.761 - - - - - - - - - 0.761 RAB33B, member RAS oncogene family [Source:NCBI gene;Acc:422441]
51. CLIC3 ENSGALG00000038789 233 0.759 - - - - - - - - - 0.759 chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
52. OSR1 ENSGALG00000016473 1202 0.757 - - - - - - 0.757 - - - odd-skipped related transciption factor 1 [Source:HGNC Symbol;Acc:HGNC:8111]
53. FAM192A ENSGALG00000021473 10213 0.756 - - - - - - - - - 0.756 family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
54. ELOVL1 ENSGALG00000009988 4000 0.756 - - - - - - - - - 0.756 ELOVL fatty acid elongase 1 [Source:NCBI gene;Acc:424564]
55. GGA.1330 GGA.1330 11281 0.756 - - - - - - 0.756 - - -
56. AN1ZNF5L ENSGALG00000014589 21148 0.756 - - - - - - 0.756 - - - AN1-type zinc finger protein 5-like, transcript variant X2
57. BRAP ENSGALG00000004650 555 0.755 - - - - - - - - - 0.755 BRCA1 associated protein [Source:NCBI gene;Acc:772041]
58. GSS ENSGALG00000003281 57 0.754 - - - - - - - - - 0.754 glutathione synthetase [Source:HGNC Symbol;Acc:HGNC:4624]
59. SHISA5 ENSGALG00000004661 8573 0.752 - - - - - - 0.752 - - - shisa family member 5 [Source:NCBI gene;Acc:415948]
60. CABIN1 ENSGALG00000006363 4415 0.751 - - - - - - - - - 0.751 calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
61. SKAP2 ENSGALG00000030081 13746 0.751 - - - - - - 0.751 - - - src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:HGNC:15687]
62. ACTN1 ENSGALG00000042458 10477 0.751 - - - - - - 0.751 - - - actinin, alpha 1 [Source:NCBI gene;Acc:373918]
63. ZEB2 ENSGALG00000040465 315 0.75 - - - - - - - - - 0.750 Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
64. CERCAM ENSGALG00000004986 5158 0.75 - - - - - - - 0.750 - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
65. SKP2 ENSGALG00000003547 14637 0.749 - - - - - - 0.749 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
66. TNFAIP2 ENSGALG00000011446 32 0.749 - - - - - - - - - 0.749 TNF alpha induced protein 2 [Source:HGNC Symbol;Acc:HGNC:11895]
67. MAP2K4 ENSGALG00000032178 5982 0.748 - - - - - - 0.748 - - - mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6844]
68. DNMT3B ENSGALG00000041461 12959 0.747 - - - - - - - 0.747 - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
69. MPP6 ENSGALG00000010988 1904 0.746 - - - - - - - 0.746 - - membrane palmitoylated protein 6 [Source:HGNC Symbol;Acc:HGNC:18167]
70. TRAK2 ENSGALG00000008370 46 0.746 - - - - - - - - - 0.746 trafficking kinesin protein 2 [Source:HGNC Symbol;Acc:HGNC:13206]
71. ZMYND10 ENSGALG00000035883 58 0.745 - - - - - - - - - 0.745 zinc finger MYND-type containing 10 [Source:HGNC Symbol;Acc:HGNC:19412]
72. GLCE ENSGALG00000028191 1170 0.745 - - - - - - 0.745 - - - glucuronic acid epimerase [Source:HGNC Symbol;Acc:HGNC:17855]
73. PPIC ENSGALG00000005346 5002 0.745 - - - - - - 0.745 - - - peptidylprolyl isomerase C [Source:HGNC Symbol;Acc:HGNC:9256]
74. TBX3 ENSGALG00000036043 2888 0.745 - - - - - - 0.745 - - - T-box 3 [Source:NCBI gene;Acc:374202]
75. TRMT61A ENSGALG00000011522 14 0.745 - - - - - - - - - 0.745 tRNA methyltransferase 61A [Source:HGNC Symbol;Acc:HGNC:23790]
76. SNRNP40 ENSGALG00000000615 32298 0.744 - - - - - - 0.744 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
77. MDFIC ENSGALG00000026838 3881 0.744 - - - - - - 0.744 - - - MyoD family inhibitor domain containing [Source:HGNC Symbol;Acc:HGNC:28870]
78. TET1 ENSGALG00000031604 13002 0.743 - - - - - - 0.743 - - - tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
79. ZMIZ1 ENSGALG00000004850 114 0.743 - - - - - - - - - 0.743 zinc finger MIZ-type containing 1 [Source:HGNC Symbol;Acc:HGNC:16493]
80. MYL9 ENSGALG00000028567 36256 0.743 - - - - - - 0.743 - - - myosin, light chain 9, regulatory [Source:NCBI gene;Acc:396215]
81. F F 3639 0.743 - - - - - - - 0.743 - -
82. MGAT4B ENSGALG00000005924 2663 0.743 - - - - - - 0.743 - - - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:7048]
83. C3orf58 ENSGALG00000002347 27 0.743 - - - - - - - - - 0.743 chromosome 3 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:28490]
84. AKAP11 ENSGALG00000022739 82 0.742 - - - - - - - - - 0.742 A-kinase anchoring protein 11 [Source:HGNC Symbol;Acc:HGNC:369]
85. gga-mir-6544 ENSGALG00000027916 19 0.742 - - - - - - - - - 0.742 gga-mir-6544 [Source:miRBase;Acc:MI0022360]
86. TNFAIP3 ENSGALG00000013861 11 0.742 - - - - - - - - - 0.742 TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]
87. NDUFB8 ENSGALG00000005704 5781 0.742 - - - - - - - - - 0.742 NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
88. NDUFAB1 ENSGALG00000006073 40467 0.742 - - - - - - 0.742 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
89. ANKRD16 ENSGALG00000008168 475 0.741 - - - - - - - - - 0.741 ankyrin repeat domain 16 [Source:NCBI gene;Acc:416688]
90. TNN ENSGALG00000004538 21 0.741 - - - - - - - - - 0.741 tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
91. TUBB6 ENSGALG00000031275 17690 0.741 - - - - - - 0.741 - - - tubulin beta 6 class V [Source:NCBI gene;Acc:421037]
92. BMP2K ENSGALG00000010885 37 0.741 - - - - - - - - - 0.741 BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
93. MRPS30 ENSGALG00000014874 3416 0.741 - - - - - - 0.741 - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
94. TBX5 ENSGALG00000008253 820 0.74 - - - - - - - - - 0.740 T-box 5 [Source:NCBI gene;Acc:373988]
95. NMBR ENSGALG00000013813 15 0.74 - - - - - - - - - 0.740 neuromedin B receptor [Source:HGNC Symbol;Acc:HGNC:7843]
96. ERRFI1 ENSGALG00000000535 83 0.739 - - - - - - - - - 0.739 ERBB receptor feedback inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:18185]
97. UNC5B ENSGALG00000004569 1475 0.739 - - - - - - - 0.739 - - unc-5 netrin receptor B [Source:NCBI gene;Acc:423716]
98. PHF11 ENSGALG00000019094 770 0.739 - - - - - - - - - 0.739 PHD finger protein 11 [Source:HGNC Symbol;Acc:HGNC:17024]
99. PSMB2 ENSGALG00000026421 51885 0.739 - - - - - - 0.739 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
100. FYTTD1 ENSGALG00000007581 9341 0.738 - - - - - - 0.738 - - - forty-two-three domain containing 1 [Source:NCBI gene;Acc:424921]

There are 131 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA