Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOX11

Gene Name Gene ID Reads Annotation
SOX11 ENSGALG00000016397 12144 SRY-box 11 [Source:NCBI gene;Acc:396104]











Genes with expression patterns similar to SOX11

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SOX11 ENSGALG00000016397 12144 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY-box 11 [Source:NCBI gene;Acc:396104]
2. RFC1 ENSGALG00000014298 6516 1.48 - - - - - - 0.747 0.733 - - replication factor C subunit 1 [Source:NCBI gene;Acc:422788]
3. GNAI2 ENSGALG00000035645 9535 1.473 - - - - - - 0.751 0.722 - - G protein subunit alpha i2 [Source:HGNC Symbol;Acc:HGNC:4385]
4. DPYSL2 ENSGALG00000000227 9668 1.465 - - - - - - 0.727 - - 0.738 dihydropyrimidinase like 2 [Source:NCBI gene;Acc:395155]
5. CHMP1B ENSGALG00000040746 4031 1.429 - - - - - - 0.728 0.701 - - charged multivesicular body protein 1B [Source:NCBI gene;Acc:422143]
6. MBSP MBSP 5634 1.423 - - - - - - 0.715 0.708 - -
7. NENF ENSGALG00000009821 4826 1.419 - - - - - - 0.713 0.706 - - neudesin neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:30384]
8. TARDBP ENSGALG00000002906 24748 0.881 - - - - - - 0.881 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
9. USP10 ENSGALG00000005674 7768 0.847 - - - - - - 0.847 - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
10. RAB6A ENSGALG00000017320 10569 0.847 - - - - - - 0.847 - - - RAB6A, member RAS oncogene family [Source:NCBI gene;Acc:419063]
11. PABPC1 ENSGALG00000030280 23934 0.844 - - - - - - 0.844 - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
12. RYK ENSGALG00000006488 10533 0.841 - - - - - - - 0.841 - - receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
13. EGLN1 ENSGALG00000041422 11032 0.832 - - - - - - 0.832 - - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
14. PRKACB ENSGALG00000028530 12506 0.829 - - - - - - - 0.829 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
15. PHF14 ENSGALG00000038041 13687 0.824 - - - - - - - 0.824 - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
16. METAP2 ENSGALG00000011377 16311 0.82 - - - - - - 0.820 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
17. ACTR8 ENSGALG00000005385 3647 0.819 - - - - - - - 0.819 - - ARP8 actin related protein 8 homolog [Source:HGNC Symbol;Acc:HGNC:14672]
18. TAF3 ENSGALG00000006731 15569 0.817 - - - - - - 0.817 - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
19. TBL1XR1 ENSGALG00000039182 16983 0.816 - - - - - - 0.816 - - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
20. AMOT ENSGALG00000007952 2299 0.812 - - - - - - 0.812 - - - angiomotin [Source:HGNC Symbol;Acc:HGNC:17810]
21. PTGFRN ENSGALG00000015464 14584 0.812 - - - - - - 0.812 - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
22. TMED7 ENSGALG00000028484 21008 0.806 - - - - - - 0.806 - - - Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
23. RUNX1T1 ENSGALG00000033091 17529 0.806 - - - - - - 0.806 - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
24. EP300 ENSGALG00000011992 12490 0.804 - - - - - - 0.804 - - - E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
25. TET1 ENSGALG00000031604 13002 0.803 - - - - - - 0.803 - - - tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
26. RUVBL1 ENSGALG00000005931 9379 0.801 - - - - - - 0.801 - - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
27. ATG3 ENSGALG00000015204 11277 0.797 - - - - - - 0.797 - - - autophagy related 3 [Source:NCBI gene;Acc:418369]
28. PHTF1 ENSGALG00000001845 3276 0.797 - - - - - - - 0.797 - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
29. NEK6 ENSGALG00000001118 20333 0.797 - - - - - - 0.797 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
30. API5 ENSGALG00000037968 18265 0.794 - - - - - - 0.794 - - - apoptosis inhibitor 5 [Source:NCBI gene;Acc:423168]
31. DCTD ENSGALG00000010674 8396 0.794 - - - - - - - 0.794 - - dCMP deaminase [Source:NCBI gene;Acc:422556]
32. NUBPL ENSGALG00000009983 3328 0.793 - - - - - - - 0.793 - - nucleotide binding protein like [Source:HGNC Symbol;Acc:HGNC:20278]
33. EPFIP1L ENSGALG00000007683 18050 0.79 - - - - - - 0.790 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
34. TMTC2 ENSGALG00000010975 7040 0.789 - - - - - - 0.789 - - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
35. ARFIP2 ENSGALG00000037839 4831 0.788 - - - - - - 0.788 - - - ADP ribosylation factor interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:17160]
36. TSC22D2 ENSGALG00000027591 6594 0.788 - - - - - - 0.788 - - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
37. ERBB2IP ERBB2IP 5800 0.787 - - - - - - 0.787 - - -
38. CHD7 ENSGALG00000041080 10201 0.787 - - - - - - 0.787 - - - chromodomain helicase DNA binding protein 7 [Source:NCBI gene;Acc:421140]
39. FBXW2 ENSGALG00000000864 2995 0.785 - - - - - - 0.785 - - - F-box and WD repeat domain containing 2 [Source:NCBI gene;Acc:417088]
40. UBE2H ENSGALG00000031975 12964 0.785 - - - - - - 0.785 - - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
41. CZH9ORF80 CZH9ORF80 12760 0.78 - - - - - - 0.780 - - -
42. MAP2 ENSGALG00000002789 6597 0.78 - - - - - - - - - 0.780 microtubule associated protein 2, transcript variant X33
43. WDR43 ENSGALG00000032529 12235 0.78 - - - - - - 0.780 - - - WD repeat domain 43 [Source:NCBI gene;Acc:421295]
44. DDX19B ENSGALG00000039967 49600 0.779 - - - - - - 0.779 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
45. WDR45B ENSGALG00000001563 5870 0.779 - - - - - - 0.779 - - - WD repeat domain 45B [Source:NCBI gene;Acc:417339]
46. DCP2 ENSGALG00000000215 2665 0.778 - - - - - - 0.778 - - - decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]
47. HOXA5 ENSGALG00000025929 6231 0.777 - - - - - - - 0.777 - - homeobox A5 [Source:NCBI gene;Acc:100858404]
48. SS18 ENSGALG00000015119 4687 0.777 - - - - - - 0.777 - - - SS18, nBAF chromatin remodeling complex subunit [Source:NCBI gene;Acc:421085]
49. TIA1 ENSGALG00000013879 16330 0.776 - - - - - - 0.776 - - - TIA1 cytotoxic granule associated RNA binding protein [Source:NCBI gene;Acc:771327]
50. RABGGTB ENSGALG00000011388 11654 0.776 - - - - - - 0.776 - - - Rab geranylgeranyltransferase subunit beta [Source:HGNC Symbol;Acc:HGNC:9796]
51. SPEN ENSGALG00000036932 9688 0.774 - - - - - - 0.774 - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
52. RPS28 ENSGALG00000024398 244056 0.774 - - - - - - 0.774 - - - ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. CCDC134 ENSGALG00000011918 6994 0.773 - - - - - - - 0.773 - - coiled-coil domain containing 134 [Source:HGNC Symbol;Acc:HGNC:26185]
54. MRPL20 ENSGALG00000001542 28764 0.773 - - - - - - 0.773 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
55. MKRN1 ENSGALG00000012852 6907 0.77 - - - - - - - 0.770 - - makorin ring finger protein 1 [Source:NCBI gene;Acc:395500]
56. SGOL1 SGOL1 3919 0.77 - - - - - - - 0.770 - -
57. UBE2D1 ENSGALG00000021213 5876 0.769 - - - - - - 0.769 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
58. WASL ENSGALG00000008797 5729 0.769 - - - - - - 0.769 - - - Wiskott-Aldrich syndrome like [Source:NCBI gene;Acc:417750]
59. DKC1 ENSGALG00000005054 30350 0.769 - - - - - - 0.769 - - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
60. EBNA1BP2 ENSGALG00000009045 17453 0.768 - - - - - - 0.768 - - - EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
61. RBM17 ENSGALG00000006332 12656 0.768 - - - - - - 0.768 - - - RNA binding motif protein 17 [Source:HGNC Symbol;Acc:HGNC:16944]
62. FAM188B 2097 0.768 - - - - - - 0.768 - - - family with sequence similarity 188 member B
63. C1H21ORF91 ENSGALG00000028290 5550 0.767 - - - - - - - 0.767 - - chromosome 1 open reading frame, human C21orf91 [Source:NCBI gene;Acc:395489]
64. HSPA4 ENSGALG00000040882 20966 0.767 - - - - - - 0.767 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
65. ADD1 ENSGALG00000015664 6828 0.767 - - - - - - 0.767 - - - adducin 1 [Source:NCBI gene;Acc:422882]
66. UBR2 ENSGALG00000009906 7717 0.767 - - - - - - 0.767 - - - ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
67. RAB10 ENSGALG00000016535 5272 0.767 - - - - - - 0.767 - - - RAB10, member RAS oncogene family [Source:NCBI gene;Acc:421994]
68. MAP2K4 ENSGALG00000032178 5982 0.766 - - - - - - 0.766 - - - mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6844]
69. HMGB2 ENSGALG00000010745 89235 0.766 - - - - - - 0.766 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
70. PPP1R2 ENSGALG00000029789 11594 0.766 - - - - - - 0.766 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
71. YIPF5 ENSGALG00000007404 5598 0.765 - - - - - - 0.765 - - - Yip1 domain family member 5 [Source:NCBI gene;Acc:416344]
72. SKP2 ENSGALG00000003547 14637 0.765 - - - - - - 0.765 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
73. GLRX3 ENSGALG00000010464 22578 0.765 - - - - - - 0.765 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
74. MTMR8 ENSGALG00000007590 6022 0.765 - - - - - - 0.765 - - - myotubularin related protein 8 [Source:NCBI gene;Acc:422312]
75. EVL ENSGALG00000011209 5440 0.764 - - - - - - 0.764 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
76. LYPLA2 ENSGALG00000004002 3939 0.761 - - - - - - 0.761 - - - lysophospholipase II [Source:NCBI gene;Acc:419685]
77. PACS1 ENSGALG00000008567 1423 0.761 - - - - - - 0.761 - - - phosphofurin acidic cluster sorting protein 1, transcript variant X3
78. EIF5B ENSGALG00000016764 30681 0.761 - - - - - - - 0.761 - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
79. PARP1 ENSGALG00000009228 39433 0.761 - - - - - - 0.761 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
80. RBFOX1 ENSGALG00000034325 2133 0.76 - - - - - - 0.760 - - - RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]
81. CDC40 ENSGALG00000015061 6118 0.76 - - - - - - 0.760 - - - cell division cycle 40 [Source:NCBI gene;Acc:421760]
82. gga-mir-7476 gga-mir-7476 20209 0.76 - - - - - - 0.760 - - -
83. RANGAP1 ENSGALG00000011966 20170 0.76 - - - - - - 0.760 - - - Ran GTPase activating protein 1 [Source:NCBI gene;Acc:417997]
84. ATP2B1 ENSGALG00000030550 15123 0.759 - - - - - - 0.759 - - - ATPase plasma membrane Ca2+ transporting 1 [Source:NCBI gene;Acc:374244]
85. MRPS22 ENSGALG00000005367 8307 0.759 - - - - - - - 0.759 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
86. PSMC3 ENSGALG00000008108 22922 0.758 - - - - - - 0.758 - - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
87. PSMB2 ENSGALG00000026421 51885 0.758 - - - - - - 0.758 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
88. GLO1 ENSGALG00000010127 31662 0.758 - - - - - - 0.758 - - - glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
89. PES1 ENSGALG00000007778 12248 0.758 - - - - - - 0.758 - - - pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
90. BET1L ENSGALG00000004172 5305 0.758 - - - - - - 0.758 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
91. ACTR2 ENSGALG00000008779 17812 0.758 - - - - - - 0.758 - - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
92. NHP2L1 NHP2L1 12124 0.757 - - - - - - 0.757 - - -
93. NDUFA12 ENSGALG00000011325 19807 0.756 - - - - - - 0.756 - - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
94. CCNG2 ENSGALG00000010347 9122 0.756 - - - - - - 0.756 - - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
95. CHMP6 ENSGALG00000026428 18026 0.756 - - - - - - 0.756 - - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
96. PDLIM4 ENSGALG00000039872 7823 0.755 - - - - - - - 0.755 - - PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
97. ZNF593 ENSGALG00000000542 79105 0.754 - - - - - - 0.754 - - - zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. CASP6 ENSGALG00000012186 6639 0.753 - - - - - - - 0.753 - - caspase 6 [Source:NCBI gene;Acc:395477]
99. GFOD2 ENSGALG00000001201 5242 0.753 - - - - - - 0.753 - - - glucose-fructose oxidoreductase domain containing 2 [Source:NCBI gene;Acc:415642]
100. YWHAZ ENSGALG00000031387 84985 0.753 - - - - - - 0.753 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]

There are 303 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA