Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOD1

Gene Name Gene ID Reads Annotation
SOD1 ENSGALG00000015844 35836 superoxide dismutase 1, soluble [Source:NCBI gene;Acc:395938]











Genes with expression patterns similar to SOD1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SOD1 ENSGALG00000015844 35836 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 superoxide dismutase 1, soluble [Source:NCBI gene;Acc:395938]
2. MCM5 ENSGALG00000012546 18254 1.581 - - - - 0.741 - 0.840 - - - minichromosome maintenance complex component 5 [Source:NCBI gene;Acc:418058]
3. TM9SF2 ENSGALG00000016878 11548 1.579 - - - - - - 0.786 0.793 - - transmembrane 9 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11865]
4. ILF2 ENSGALG00000011570 23050 1.555 - - - - - - 0.782 0.773 - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
5. SF3A2 ENSGALG00000021679 12580 1.512 - - - - 0.744 - 0.768 - - - splicing factor 3a subunit 2 [Source:NCBI gene;Acc:420077]
6. CIRH1A CIRH1A 6975 1.501 - - - - - - 0.738 0.763 - -
7. NDUFA1 ENSGALG00000008613 20410 1.491 - - - - 0.730 - 0.761 - - - NADH:ubiquinone oxidoreductase subunit A1 [Source:NCBI gene;Acc:772150]
8. DGCR2 ENSGALG00000005891 8405 1.456 - - - - 0.707 - 0.749 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
9. GTF2F2 ENSGALG00000016974 7524 1.434 - - - - - - 0.702 0.732 - - general transcription factor IIF subunit 2 [Source:HGNC Symbol;Acc:HGNC:4653]
10. SMC2 ENSGALG00000015691 34013 0.907 - - - - - - - 0.907 - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
11. DEK ENSGALG00000012684 14179 0.901 - - - - - - 0.901 - - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
12. CSE1L ENSGALG00000004707 20653 0.894 - - - - - - 0.894 - - - chromosome segregation 1 like [Source:HGNC Symbol;Acc:HGNC:2431]
13. EIF3B ENSGALG00000040999 49971 0.893 - - - - - - 0.893 - - - eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
14. TXNDC12 ENSGALG00000010569 13822 0.89 - - - - - - 0.890 - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
15. SSBP1 ENSGALG00000012876 34256 0.889 - - - - - - 0.889 - - - single stranded DNA binding protein 1 [Source:NCBI gene;Acc:418122]
16. SEC11A ENSGALG00000037553 32123 0.883 - - - - - - 0.883 - - - SEC11 homolog A, signal peptidase complex subunit [Source:NCBI gene;Acc:415334]
17. TXNDC17 ENSGALG00000027950 45004 0.883 - - - - - - 0.883 - - - thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:HGNC:28218]
18. PPP1R7 ENSGALG00000031766 22187 0.882 - - - - - - 0.882 - - - protein phosphatase 1 regulatory subunit 7 [Source:NCBI gene;Acc:424844]
19. XBP1 ENSGALG00000005796 14007 0.879 - - - - - - 0.879 - - - X-box binding protein 1 [Source:NCBI gene;Acc:416918]
20. FKBP12 FKBP12 64317 0.879 - - - - - - 0.879 - - -
21. NAA38 ENSGALG00000045783 11229 0.879 - - - - - - 0.879 - - - N(alpha)-acetyltransferase 38, NatC auxiliary subunit, transcript variant X3
22. ENSGALG00000006463 ENSGALG00000006463 45151 0.875 - - - - - - 0.875 - - -
23. PSMB2 ENSGALG00000026421 51885 0.874 - - - - - - 0.874 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
24. CPSF4 ENSGALG00000004714 14353 0.872 - - - - - - 0.872 - - - cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:416494]
25. EIF4A2 ENSGALG00000008684 58507 0.872 - - - - - - 0.872 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
26. HMGN3 ENSGALG00000015880 30919 0.87 - - - - - - 0.870 - - - high mobility group nucleosomal binding domain 3 [Source:NCBI gene;Acc:421853]
27. PCNP ENSGALG00000015330 15750 0.866 - - - - - - 0.866 - - - PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
28. BLMH ENSGALG00000004259 36907 0.866 - - - - - - 0.866 - - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
29. TMCO1 ENSGALG00000033460 22822 0.862 - - - - - - 0.862 - - - transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:18188]
30. MRPL20 ENSGALG00000001542 28764 0.861 - - - - - - 0.861 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
31. MTAP ENSGALG00000008174 10976 0.86 - - - - - - 0.860 - - - methylthioadenosine phosphorylase [Source:NCBI gene;Acc:431261]
32. SLC25A39 ENSGALG00000042894 10654 0.859 - - - - - - 0.859 - - - solute carrier family 25 member 39 [Source:HGNC Symbol;Acc:HGNC:24279]
33. PARP1 ENSGALG00000009228 39433 0.858 - - - - - - 0.858 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
34. SIKE1 ENSGALG00000002147 20836 0.857 - - - - - - 0.857 - - - suppressor of IKBKE 1 [Source:NCBI gene;Acc:419887]
35. UQCR10 ENSGALG00000008066 52968 0.856 - - - - - - 0.856 - - - ubiquinol-cytochrome c reductase, complex III subunit X [Source:NCBI gene;Acc:770937]
36. PRELID1 ENSGALG00000002990 55592 0.856 - - - - - - 0.856 - - - PRELI domain containing 1 [Source:NCBI gene;Acc:395819]
37. DKC1 ENSGALG00000005054 30350 0.854 - - - - - - 0.854 - - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
38. COMMD1 ENSGALG00000008931 12202 0.853 - - - - - - 0.853 - - - copper metabolism domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23024]
39. NDUFS7 ENSGALG00000009703 19674 0.853 - - - - - - 0.853 - - - NADH:ubiquinone oxidoreductase core subunit S7 [Source:HGNC Symbol;Acc:HGNC:7714]
40. PDCD10 ENSGALG00000009477 7061 0.852 - - - - - - 0.852 - - - programmed cell death 10 [Source:NCBI gene;Acc:425003]
41. PPIH ENSGALG00000004874 25558 0.852 - - - - - - 0.852 - - - peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
42. RPA2 39663 0.851 - - - - - - 0.851 - - - replication protein A2
43. HMGB2 ENSGALG00000010745 89235 0.85 - - - - - - 0.850 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
44. YWHAZ ENSGALG00000031387 84985 0.848 - - - - - - 0.848 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
45. NDUFAB1 ENSGALG00000006073 40467 0.848 - - - - - - 0.848 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
46. NDUFS8 ENSGALG00000040173 24745 0.847 - - - - - - 0.847 - - - NADH:ubiquinone oxidoreductase core subunit S8 [Source:HGNC Symbol;Acc:HGNC:7715]
47. SRI ENSGALG00000008985 13865 0.847 - - - - - - 0.847 - - - sorcin [Source:NCBI gene;Acc:420538]
48. THRAP3 ENSGALG00000002144 21958 0.844 - - - - - - 0.844 - - - thyroid hormone receptor associated protein 3 [Source:NCBI gene;Acc:419623]
49. EIF2S1 ENSGALG00000009565 63906 0.844 - - - - - - 0.844 - - - eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
50. RPL35 ENSGALG00000035677 252113 0.842 - - - - - - 0.842 - - - ribosomal protein L35 [Source:NCBI gene;Acc:374133]
51. VBP1 VBP1 14482 0.842 - - - - - - 0.842 - - -
52. MYCBP ENSGALG00000024295 13273 0.841 - - - - - - 0.841 - - - MYC binding protein
53. NUTF2 ENSGALG00000001602 32832 0.841 - - - - - - 0.841 - - - nuclear transport factor 2 [Source:NCBI gene;Acc:415655]
54. DUT ENSGALG00000038032 34659 0.84 - - - - - - 0.840 - - - deoxyuridine triphosphatase [Source:NCBI gene;Acc:769338]
55. PPP1CC ENSGALG00000004571 14748 0.839 - - - - - - 0.839 - - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
56. RCN2 ENSGALG00000039284 17848 0.838 - - - - - - 0.838 - - - reticulocalbin 2 [Source:NCBI gene;Acc:415350]
57. MMD ENSGALG00000003078 21311 0.837 - - - - - - 0.837 - - - monocyte to macrophage differentiation associated [Source:NCBI gene;Acc:417397]
58. TXN2 ENSGALG00000012532 12518 0.836 - - - - - - 0.836 - - - thioredoxin 2 [Source:NCBI gene;Acc:426978]
59. Mar-05 Mar-05 6330 0.833 - - - - - - 0.833 - - -
60. PDIA6 ENSGALG00000016447 51308 0.832 - - - - - - 0.832 - - - protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
61. SSR3 ENSGALG00000028683 24334 0.832 - - - - - - 0.832 - - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
62. SFPQ ENSGALG00000002514 66832 0.831 - - - - - - 0.831 - - - splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
63. NT5C3A ENSGALG00000031397 6667 0.831 - - - - - - - 0.831 - - 5'-nucleotidase, cytosolic IIIA [Source:NCBI gene;Acc:395080]
64. MED17 ENSGALG00000017218 5821 0.829 - - - - - - 0.829 - - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
65. LLPH ENSGALG00000019358 20976 0.828 - - - - - - 0.828 - - - LLP homolog, long-term synaptic facilitation [Source:NCBI gene;Acc:771027]
66. FAM136A ENSGALG00000042163 39487 0.828 - - - - - - 0.828 - - - family with sequence similarity 136 member A [Source:NCBI gene;Acc:426296]
67. UTP11L UTP11L 11927 0.827 - - - - - - 0.827 - - -
68. GLO1 ENSGALG00000010127 31662 0.827 - - - - - - 0.827 - - - glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
69. PSMB4 ENSGALG00000000905 46735 0.827 - - - - - - 0.827 - - - proteasome subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:9541]
70. PPAT ENSGALG00000013728 7563 0.826 - - - - - - 0.826 - - - phosphoribosyl pyrophosphate amidotransferase [Source:NCBI gene;Acc:422743]
71. C C 7669 0.826 - - - - - - 0.826 - - -
72. ENSGALG00000009044 ENSGALG00000009044 14492 0.826 - - - - - - 0.826 - - -
73. MORF4L1 ENSGALG00000008146 29940 0.826 - - - - - - 0.826 - - - mortality factor 4 like 1 [Source:NCBI gene;Acc:554283]
74. BRD7 ENSGALG00000003786 26858 0.825 - - - - - - 0.825 - - - bromodomain containing 7 [Source:NCBI gene;Acc:415730]
75. ADSS ENSGALG00000010702 7207 0.824 - - - - - - 0.824 - - - adenylosuccinate synthase [Source:NCBI gene;Acc:428579]
76. PRR5 ENSGALG00000014213 3408 0.824 - - - - - - - 0.824 - - proline rich 5 [Source:NCBI gene;Acc:418237]
77. HMGN1 ENSGALG00000016067 17375 0.823 - - - - - - 0.823 - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
78. CLINT1 ENSGALG00000003702 11269 0.823 - - - - - - 0.823 - - - clathrin interactor 1 [Source:NCBI gene;Acc:416240]
79. SLC25A3 ENSGALG00000011514 62606 0.822 - - - - - - 0.822 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
80. ENSGALG00000016887 ENSGALG00000016887 20086 0.822 - - - - - - 0.822 - - -
81. ITGB1 ENSGALG00000007145 19551 0.821 - - - - - - 0.821 - - - integrin subunit beta 1 [Source:NCBI gene;Acc:374058]
82. DYNLT1 ENSGALG00000019979 38176 0.821 - - - - - - 0.821 - - - dynein light chain Tctex-type 1 [Source:HGNC Symbol;Acc:HGNC:11697]
83. CHST6 ENSGALG00000000913, ENSGALG00000036545 7526 0.821 - - - - - - 0.821 - - - carbohydrate sulfotransferase 6 [Source:NCBI gene;Acc:770257]
84. POLR2K ENSGALG00000036019 8962 0.819 - - - - - - 0.819 - - - RNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]
85. NDUFC2 ENSGALG00000029172 26136 0.819 - - - - - - 0.819 - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
86. RABIF ENSGALG00000000436 6449 0.818 - - - - - - 0.818 - - - RAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]
87. RAD21 ENSGALG00000029523 25658 0.817 - - - - - - 0.817 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
88. RALB ENSGALG00000026493 14590 0.817 - - - - - - 0.817 - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
89. NDUFA12 ENSGALG00000011325 19807 0.817 - - - - - - 0.817 - - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
90. C11H16ORF80 C11H16ORF80 18673 0.817 - - - - - - 0.817 - - -
91. CDC45 ENSGALG00000001616 8432 0.816 - - - - - - 0.816 - - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
92. STRN3 ENSGALG00000040464 9045 0.816 - - - - - - 0.816 - - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
93. SMC4 ENSGALG00000009553 15715 0.815 - - - - - - 0.815 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
94. TMEM123 ENSGALG00000017185 6798 0.814 - - - - - - 0.814 - - - transmembrane protein 123 [Source:NCBI gene;Acc:418984]
95. RBMX ENSGALG00000006457 34009 0.814 - - - - - - 0.814 - - - RNA binding motif protein X-linked [Source:NCBI gene;Acc:422248]
96. AP2A2 ENSGALG00000006799 13874 0.814 - - - - - - 0.814 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
97. TMEM167A ENSGALG00000027332 13862 0.814 - - - - - - 0.814 - - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
98. KDELR2 ENSGALG00000040793 29669 0.814 - - - - - - 0.814 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
99. GLRX3 ENSGALG00000010464 22578 0.814 - - - - - - 0.814 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
100. R3HDM1 ENSGALG00000012246 6580 0.814 - - - - - - 0.814 - - - R3H domain containing 1 [Source:HGNC Symbol;Acc:HGNC:9757]

There are 542 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA