Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SNRPF

Gene Name Gene ID Reads Annotation
SNRPF ENSGALG00000011409 23557 small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]











Genes with expression patterns similar to SNRPF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SNRPF ENSGALG00000011409 23557 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
2. GCLM ENSGALG00000005782 15789 1.676 - - - - - - 0.938 0.738 - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
3. RRN3 ENSGALG00000041989 3934 1.65 - - - - - - 0.883 0.767 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
4. ALDH4A1 ENSGALG00000042184 9432 0.939 - - - - - - 0.939 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
5. TRAM1 ENSGALG00000041112 22876 0.938 - - - - - - 0.938 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
6. NCOA4 ENSGALG00000002066 10544 0.936 - - - - - - 0.936 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
7. CCDC58 ENSGALG00000014413 9022 0.934 - - - - - - 0.934 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
8. UTP3 ENSGALG00000011553 8814 0.931 - - - - - - 0.931 - - - UTP3, small subunit processome component homolog (S. cerevisiae)
9. NAA25 ENSGALG00000041821 12729 0.928 - - - - - - 0.928 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
10. XPA ENSGALG00000028998 8621 0.928 - - - - - - 0.928 - - - XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
11. PSMG3 ENSGALG00000004203 11240 0.921 - - - - - - 0.921 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
12. ARL6IP5 ENSGALG00000038904 12956 0.918 - - - - - - 0.918 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
13. FASTKD2 ENSGALG00000008529 7439 0.917 - - - - - - 0.917 - - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
14. ADH5 ENSGALG00000012245 38217 0.913 - - - - - - 0.913 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
15. ARPC4 ENSGALG00000006691 33311 0.912 - - - - - - 0.912 - - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
16. CLPTM1L ENSGALG00000013187 9733 0.911 - - - - - - 0.911 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
17. DNA2 ENSGALG00000004037 5426 0.909 - - - - - - 0.909 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
18. FGD3 ENSGALG00000005237 4410 0.908 - - - - - - 0.908 - - - FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
19. NARS ENSGALG00000040506 9506 0.904 - - - - - - 0.904 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
20. NDUFA9 ENSGALG00000017282 14358 0.903 - - - - - - 0.903 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
21. SF3A3 ENSGALG00000001540 9664 0.903 - - - - - - 0.903 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
22. POLR3E ENSGALG00000007008 4010 0.902 - - - - - - 0.902 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
23. EI24 ENSGALG00000038097 24081 0.901 - - - - - - 0.901 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
24. AK6 ENSGALG00000020534 4791 0.901 - - - - - - 0.901 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
25. MFGE8 ENSGALG00000006702 6976 0.9 - - - - - - 0.900 - - - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
26. ARID4A ENSGALG00000012037 8554 0.899 - - - - - - 0.899 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
27. SOD2 ENSGALG00000011661 13178 0.898 - - - - - - 0.898 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
28. POR ENSGALG00000002053 5223 0.898 - - - - - - 0.898 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
29. SDF4 ENSGALG00000001872 6382 0.898 - - - - - - 0.898 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
30. MRPL19 ENSGALG00000016731 22670 0.898 - - - - - - 0.898 - - - mitochondrial ribosomal protein L19, transcript variant X1
31. KCTD9 ENSGALG00000000275 3455 0.898 - - - - - - 0.898 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
32. RPA1 ENSGALG00000003072 8023 0.897 - - - - - - 0.897 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
33. DNAJC15 ENSGALG00000016965 9163 0.896 - - - - - - 0.896 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
34. OGFOD1 6926 0.895 - - - - - - 0.895 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
35. CLCN3 ENSGALG00000009674 3704 0.894 - - - - - - 0.894 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
36. MINOS1 ENSGALG00000004039 37740 0.894 - - - - - - 0.894 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
37. MAGOH 28688 0.894 - - - - - - 0.894 - - - mago homolog, exon junction complex core component
38. E2F6 ENSGALG00000016454 4747 0.893 - - - - - - 0.893 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
39. TM9SF3 ENSGALG00000005534 15290 0.893 - - - - - - 0.893 - - - transmembrane 9 superfamily member 3
40. ATN1 ENSGALG00000014554 3270 0.893 - - - - - - 0.893 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
41. BPTF ENSGALG00000038222 7521 0.893 - - - - - - 0.893 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
42. PTDSS1 ENSGALG00000030185 5515 0.892 - - - - - - 0.892 - - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
43. ARHGAP29 ENSGALG00000005683 3622 0.892 - - - - - - 0.892 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
44. AP2B1 ENSGALG00000042125 13229 0.891 - - - - - - 0.891 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
45. ENSGALG00000027854 ENSGALG00000027854 5007 0.891 - - - - - - 0.891 - - -
46. MYST2 MYST2 8078 0.89 - - - - - - 0.890 - - -
47. WBP11 ENSGALG00000011745 11182 0.889 - - - - - - 0.889 - - - WW domain binding protein 11, transcript variant X1
48. TBCCD1 ENSGALG00000006566 2696 0.888 - - - - - - 0.888 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
49. MAP1LC3A ENSGALG00000038721 2230 0.888 - - - - - - 0.888 - - - microtubule associated protein 1 light chain 3 alpha
50. NRD1 NRD1 10827 0.888 - - - - - - 0.888 - - -
51. PMM2 ENSGALG00000007326 8260 0.888 - - - - - - 0.888 - - - phosphomannomutase 2 [Source:NCBI gene;Acc:427679]
52. KIF20A ENSGALG00000035030 10249 0.887 - - - - - - 0.887 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
53. LATS2 4776 0.887 - - - - - - 0.887 - - - large tumor suppressor kinase 2
54. RILPL2 ENSGALG00000003321 5632 0.887 - - - - - - 0.887 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
55. PNO1 ENSGALG00000009093 11153 0.886 - - - - - - 0.886 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
56. ZMYND11 ENSGALG00000006599 5740 0.886 - - - - - - 0.886 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
57. IRAK2 ENSGALG00000008407 5934 0.886 - - - - - - 0.886 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
58. PPP3R1 ENSGALG00000023648 3417 0.885 - - - - - - 0.885 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
59. ABCD3 ENSGALG00000005647 4844 0.885 - - - - - - 0.885 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
60. SCRN1 ENSGALG00000011176 3783 0.884 - - - - - - 0.884 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
61. RAB20 ENSGALG00000016844 3250 0.882 - - - - - - 0.882 - - - RAB20, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18260]
62. MED6 ENSGALG00000029743 9414 0.882 - - - - - - 0.882 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
63. gga-mir-6643 ENSGALG00000027935 4442 0.882 - - - - - - 0.882 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
64. THOC2 ENSGALG00000008507 9501 0.882 - - - - - - 0.882 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
65. MCM4 ENSGALG00000012915 13151 0.881 - - - - - - 0.881 - - - minichromosome maintenance complex component 4
66. METTL11A METTL11A 11876 0.881 - - - - - - 0.881 - - -
67. SEMA4B ENSGALG00000008297 11202 0.88 - - - - - - 0.880 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
68. NDUFB10 ENSGALG00000005465 41984 0.88 - - - - - - 0.880 - - - NADH:ubiquinone oxidoreductase subunit B10 [Source:HGNC Symbol;Acc:HGNC:7696]
69. TMEM108 ENSGALG00000036412 2903 0.879 - - - - - - 0.879 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
70. DNAJA3 ENSGALG00000007821 3963 0.879 - - - - - - 0.879 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
71. FUNDC1 ENSGALG00000028187 10511 0.879 - - - - - - 0.879 - - - FUN14 domain containing 1 [Source:NCBI gene;Acc:418558]
72. H2AFY_1 ENSGALG00000040141 4895 0.879 - - - - - - 0.879 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
73. NDUFB8 ENSGALG00000005704 5781 0.879 - - - - - - 0.879 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
74. BFAR ENSGALG00000003111 1778 0.878 - - - - - - 0.878 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
75. RBM12B ENSGALG00000035129 4314 0.877 - - - - - - 0.877 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
76. INTS10 ENSGALG00000010130 6320 0.877 - - - - - - 0.877 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
77. MRPS11 ENSGALG00000006777 16009 0.876 - - - - - - 0.876 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
78. LARP1 ENSGALG00000040109 14808 0.875 - - - - - - 0.875 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
79. YBX1 ENSGALG00000004848 20992 0.875 - - - - - - 0.875 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
80. EIF4G3 ENSGALG00000010084 5881 0.874 - - - - - - 0.874 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
81. HDGFL3 ENSGALG00000006036 13576 0.873 - - - - - - 0.873 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
82. SHQ1 ENSGALG00000007798 1982 0.873 - - - - - - 0.873 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
83. MRE11A MRE11A 5754 0.872 - - - - - - 0.872 - - -
84. DISP1 3281 0.872 - - - - - - 0.872 - - - dispatched RND transporter family member 1, transcript variant X3
85. MOB2 ENSGALG00000030499 3658 0.871 - - - - - - 0.871 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
86. AKAP7 ENSGALG00000029794 3287 0.871 - - - - - - 0.871 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
87. LEPROTL1 ENSGALG00000024482 4251 0.87 - - - - - - 0.870 - - - leptin receptor overlapping transcript-like 1
88. NPHP3 ENSGALG00000034586 1465 0.87 - - - - - - 0.870 - - - nephrocystin 3, transcript variant X1
89. TCP1 ENSGALG00000011637 73216 0.87 - - - - - - 0.870 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
90. GFM1 ENSGALG00000009634 7213 0.869 - - - - - - 0.869 - - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
91. MSRA ENSGALG00000028032 2607 0.868 - - - - - - 0.868 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
92. UPF1 ENSGALG00000003220 9496 0.866 - - - - - - 0.866 - - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
93. KIF15 ENSGALG00000036645 9946 0.865 - - - - - - 0.865 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
94. SFT2D1 ENSGALG00000020005 10855 0.865 - - - - - - 0.865 - - - SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
95. XRN1 ENSGALG00000002706 4014 0.864 - - - - - - 0.864 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
96. ENSGALG00000002923 ENSGALG00000002923 2233 0.864 - - - - - - 0.864 - - -
97. SIRT1 ENSGALG00000002761 9028 0.863 - - - - - - 0.863 - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
98. CCND1 ENSGALG00000007555 6715 0.863 - - - - - - 0.863 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
99. MOB1B ENSGALG00000011573 567 0.863 - - - - - - 0.863 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
100. SREBF2 ENSGALG00000041687 4519 0.862 - - - - - - 0.862 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]

There are 123 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA